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org.graphstream.stream.file.FileSinkGEXF Maven / Gradle / Ivy
/*
* This file is part of GraphStream .
*
* GraphStream is a library whose purpose is to handle static or dynamic
* graph, create them from scratch, file or any source and display them.
*
* This program is free software distributed under the terms of two licenses, the
* CeCILL-C license that fits European law, and the GNU Lesser General Public
* License. You can use, modify and/ or redistribute the software under the terms
* of the CeCILL-C license as circulated by CEA, CNRS and INRIA at the following
* URL or under the terms of the GNU LGPL as published by
* the Free Software Foundation, either version 3 of the License, or (at your
* option) any later version.
*
* This program is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
* PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see
* @author Hicham Brahimi
*/
package org.graphstream.stream.file;
import org.graphstream.graph.Edge;
import org.graphstream.graph.Element;
import org.graphstream.graph.Graph;
import org.graphstream.graph.Node;
import org.graphstream.util.cumulative.CumulativeAttributes;
import org.graphstream.util.cumulative.CumulativeSpells;
import org.graphstream.util.cumulative.CumulativeSpells.Spell;
import org.graphstream.util.cumulative.GraphSpells;
import java.io.IOException;
import java.net.URI;
import java.net.URL;
import java.text.DateFormat;
import java.text.DecimalFormat;
import java.text.DecimalFormatSymbols;
import java.text.Format;
import java.text.SimpleDateFormat;
import java.util.Calendar;
import java.util.Collection;
import java.util.Date;
import java.util.HashMap;
import java.util.Locale;
import java.util.function.Consumer;
import java.util.stream.Stream;
import javax.xml.stream.FactoryConfigurationError;
import javax.xml.stream.XMLOutputFactory;
import javax.xml.stream.XMLStreamException;
import javax.xml.stream.XMLStreamWriter;
public class FileSinkGEXF extends FileSinkBase {
public static enum TimeFormat {
INTEGER(new DecimalFormat("#", new DecimalFormatSymbols(Locale.ROOT))), DOUBLE(
new DecimalFormat("#.0###################", new DecimalFormatSymbols(Locale.ROOT))), DATE(
new SimpleDateFormat("yyyy-MM-dd")), DATETIME(
new SimpleDateFormat("yyyy-MM-dd'T'hh:mm:ss.SSSZ"));
Format format;
TimeFormat(Format f) {
this.format = f;
}
}
XMLStreamWriter stream;
boolean smart;
int depth;
int currentAttributeIndex = 0;
GraphSpells graphSpells;
TimeFormat timeFormat;
public FileSinkGEXF() {
smart = true;
depth = 0;
graphSpells = null;
timeFormat = TimeFormat.DOUBLE;
}
public void setTimeFormat(TimeFormat format) {
this.timeFormat = format;
}
protected void putSpellAttributes(Spell s) throws XMLStreamException {
if (s.isStarted()) {
String start = s.isStartOpen() ? "startopen" : "start";
String date = timeFormat.format.format(s.getStartDate());
stream.writeAttribute(start, date);
}
if (s.isEnded()) {
String end = s.isEndOpen() ? "endopen" : "end";
String date = timeFormat.format.format(s.getEndDate());
stream.writeAttribute(end, date);
}
}
protected void outputEndOfFile() throws IOException {
try {
if (graphSpells != null) {
exportGraphSpells();
graphSpells = null;
}
endElement(stream, false);
stream.writeEndDocument();
stream.flush();
} catch (XMLStreamException e) {
throw new IOException(e);
}
}
protected void outputHeader() throws IOException {
Calendar cal = Calendar.getInstance();
Date date = cal.getTime();
DateFormat df = DateFormat.getDateTimeInstance(DateFormat.SHORT, DateFormat.SHORT);
try {
stream = XMLOutputFactory.newFactory().createXMLStreamWriter(output);
stream.writeStartDocument("UTF-8", "1.0");
startElement(stream, "gexf");
stream.writeAttribute("xmlns", "http://www.gexf.net/1.2draft");
stream.writeAttribute("xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance");
stream.writeAttribute("xsi:schemaLocation",
"http://www.gexf.net/1.2draft http://www.gexf.net/1.2draft/gexf.xsd");
stream.writeAttribute("version", "1.2");
startElement(stream, "meta");
stream.writeAttribute("lastmodifieddate", df.format(date));
startElement(stream, "creator");
stream.writeCharacters("GraphStream - " + getClass().getName());
endElement(stream, true);
endElement(stream, false);
} catch (XMLStreamException | FactoryConfigurationError e) {
throw new IOException(e);
}
}
protected void startElement(XMLStreamWriter stream, String name) throws XMLStreamException {
if (smart) {
stream.writeCharacters("\n");
for (int i = 0; i < depth; i++)
stream.writeCharacters(" ");
}
stream.writeStartElement(name);
depth++;
}
protected void endElement(XMLStreamWriter stream, boolean leaf) throws XMLStreamException {
depth--;
if (smart && !leaf) {
stream.writeCharacters("\n");
for (int i = 0; i < depth; i++)
stream.writeCharacters(" ");
}
stream.writeEndElement();
}
@Override
protected void exportGraph(Graph g) {
GEXFAttributeMap nodeAttributes = new GEXFAttributeMap("node", g);
GEXFAttributeMap edgeAttributes = new GEXFAttributeMap("edge", g);
final Consumer onException = Exception::printStackTrace;
try {
startElement(stream, "graph");
stream.writeAttribute("defaultedgetype", "undirected");
nodeAttributes.export(stream);
edgeAttributes.export(stream);
startElement(stream, "nodes");
g.nodes().forEach(n -> {
try {
startElement(stream, "node");
stream.writeAttribute("id", n.getId());
if (n.hasAttribute("label"))
stream.writeAttribute("label", n.getAttribute("label").toString());
if (n.getAttributeCount() > 0) {
startElement(stream, "attvalues");
n.attributeKeys().forEach(key -> {
try {
nodeAttributes.push(stream, n, key);
} catch (XMLStreamException e) {
onException.accept(e);
}
});
endElement(stream, false);
}
endElement(stream, n.getAttributeCount() == 0);
} catch (Exception ex) {
onException.accept(ex);
}
});
endElement(stream, false);
startElement(stream, "edges");
g.edges().forEach(e -> {
try {
startElement(stream, "edge");
stream.writeAttribute("id", e.getId());
stream.writeAttribute("source", e.getSourceNode().getId());
stream.writeAttribute("target", e.getTargetNode().getId());
if (e.getAttributeCount() > 0) {
startElement(stream, "attvalues");
e.attributeKeys().forEach(key -> {
try {
edgeAttributes.push(stream, e, key);
} catch (XMLStreamException e1) {
onException.accept(e1);
}
});
endElement(stream, false);
}
endElement(stream, e.getAttributeCount() == 0);
} catch (Exception ex) {
onException.accept(ex);
}
});
endElement(stream, false);
endElement(stream, false);
} catch (XMLStreamException e1) {
onException.accept(e1);
}
}
protected void exportGraphSpells() {
GEXFAttributeMap nodeAttributes = new GEXFAttributeMap("node", graphSpells);
GEXFAttributeMap edgeAttributes = new GEXFAttributeMap("edge", graphSpells);
try {
startElement(stream, "graph");
stream.writeAttribute("mode", "dynamic");
stream.writeAttribute("defaultedgetype", "undirected");
stream.writeAttribute("timeformat", timeFormat.name().toLowerCase());
nodeAttributes.export(stream);
edgeAttributes.export(stream);
startElement(stream, "nodes");
for (String nodeId : graphSpells.getNodes()) {
startElement(stream, "node");
stream.writeAttribute("id", nodeId);
CumulativeAttributes attr = graphSpells.getNodeAttributes(nodeId);
Object label = attr.getAny("label");
if (label != null)
stream.writeAttribute("label", label.toString());
CumulativeSpells spells = graphSpells.getNodeSpells(nodeId);
if (!spells.isEternal()) {
startElement(stream, "spells");
for (int i = 0; i < spells.getSpellCount(); i++) {
Spell s = spells.getSpell(i);
startElement(stream, "spell");
putSpellAttributes(s);
endElement(stream, true);
}
endElement(stream, false);
}
if (attr.getAttributesCount() > 0) {
startElement(stream, "attvalues");
nodeAttributes.push(stream, nodeId, graphSpells);
endElement(stream, false);
}
endElement(stream, spells.isEternal() && attr.getAttributesCount() == 0);
}
endElement(stream, false);
startElement(stream, "edges");
for (String edgeId : graphSpells.getEdges()) {
startElement(stream, "edge");
GraphSpells.EdgeData data = graphSpells.getEdgeData(edgeId);
stream.writeAttribute("id", edgeId);
stream.writeAttribute("source", data.getSource());
stream.writeAttribute("target", data.getTarget());
CumulativeAttributes attr = graphSpells.getEdgeAttributes(edgeId);
CumulativeSpells spells = graphSpells.getEdgeSpells(edgeId);
if (!spells.isEternal()) {
startElement(stream, "spells");
for (int i = 0; i < spells.getSpellCount(); i++) {
Spell s = spells.getSpell(i);
startElement(stream, "spell");
putSpellAttributes(s);
endElement(stream, true);
}
endElement(stream, false);
}
if (attr.getAttributesCount() > 0) {
startElement(stream, "attvalues");
edgeAttributes.push(stream, edgeId, graphSpells);
endElement(stream, false);
}
endElement(stream, spells.isEternal() && attr.getAttributesCount() == 0);
}
endElement(stream, false);
endElement(stream, false);
} catch (XMLStreamException e1) {
e1.printStackTrace();
}
}
protected void checkGraphSpells() {
if (graphSpells == null)
graphSpells = new GraphSpells();
}
public void edgeAttributeAdded(String sourceId, long timeId, String edgeId, String attribute, Object value) {
checkGraphSpells();
graphSpells.edgeAttributeAdded(sourceId, timeId, edgeId, attribute, value);
}
public void edgeAttributeChanged(String sourceId, long timeId, String edgeId, String attribute, Object oldValue,
Object newValue) {
checkGraphSpells();
graphSpells.edgeAttributeChanged(sourceId, timeId, edgeId, attribute, oldValue, newValue);
}
public void edgeAttributeRemoved(String sourceId, long timeId, String edgeId, String attribute) {
checkGraphSpells();
graphSpells.edgeAttributeRemoved(sourceId, timeId, edgeId, attribute);
}
public void graphAttributeAdded(String sourceId, long timeId, String attribute, Object value) {
checkGraphSpells();
graphSpells.graphAttributeAdded(sourceId, timeId, attribute, value);
}
public void graphAttributeChanged(String sourceId, long timeId, String attribute, Object oldValue,
Object newValue) {
checkGraphSpells();
graphSpells.graphAttributeChanged(sourceId, timeId, attribute, oldValue, newValue);
}
public void graphAttributeRemoved(String sourceId, long timeId, String attribute) {
checkGraphSpells();
graphSpells.graphAttributeRemoved(sourceId, timeId, attribute);
}
public void nodeAttributeAdded(String sourceId, long timeId, String nodeId, String attribute, Object value) {
checkGraphSpells();
graphSpells.nodeAttributeAdded(sourceId, timeId, nodeId, attribute, value);
}
public void nodeAttributeChanged(String sourceId, long timeId, String nodeId, String attribute, Object oldValue,
Object newValue) {
checkGraphSpells();
graphSpells.nodeAttributeChanged(sourceId, timeId, nodeId, attribute, oldValue, newValue);
}
public void nodeAttributeRemoved(String sourceId, long timeId, String nodeId, String attribute) {
checkGraphSpells();
graphSpells.nodeAttributeRemoved(sourceId, timeId, nodeId, attribute);
}
public void edgeAdded(String sourceId, long timeId, String edgeId, String fromNodeId, String toNodeId,
boolean directed) {
checkGraphSpells();
graphSpells.edgeAdded(sourceId, timeId, edgeId, fromNodeId, toNodeId, directed);
}
public void edgeRemoved(String sourceId, long timeId, String edgeId) {
checkGraphSpells();
graphSpells.edgeRemoved(sourceId, timeId, edgeId);
}
public void graphCleared(String sourceId, long timeId) {
checkGraphSpells();
graphSpells.graphCleared(sourceId, timeId);
}
public void nodeAdded(String sourceId, long timeId, String nodeId) {
checkGraphSpells();
graphSpells.nodeAdded(sourceId, timeId, nodeId);
}
public void nodeRemoved(String sourceId, long timeId, String nodeId) {
checkGraphSpells();
graphSpells.nodeRemoved(sourceId, timeId, nodeId);
}
public void stepBegins(String sourceId, long timeId, double step) {
checkGraphSpells();
graphSpells.stepBegins(sourceId, timeId, step);
}
class GEXFAttribute {
int index;
String key;
String type;
GEXFAttribute(String key, String type) {
this.index = currentAttributeIndex++;
this.key = key;
this.type = type;
}
}
class GEXFAttributeMap extends HashMap {
private static final long serialVersionUID = 6176508111522815024L;
protected String type;
GEXFAttributeMap(String type, Graph g) {
this.type = type;
Stream stream;
if (type.equals("node"))
stream = g.nodes();
else
stream = g.edges();
stream.forEach(e -> {
e.attributeKeys().forEach(key -> {
Object value = e.getAttribute(key);
check(key, value);
});
});
}
GEXFAttributeMap(String type, GraphSpells spells) {
this.type = type;
if (type.equals("node")) {
for (String nodeId : spells.getNodes()) {
CumulativeAttributes attr = spells.getNodeAttributes(nodeId);
for (String key : attr.getAttributes()) {
for (Spell s : attr.getAttributeSpells(key)) {
Object value = s.getAttachedData();
check(key, value);
}
}
}
} else {
for (String edgeId : spells.getEdges()) {
CumulativeAttributes attr = spells.getEdgeAttributes(edgeId);
for (String key : attr.getAttributes()) {
for (Spell s : attr.getAttributeSpells(key)) {
Object value = s.getAttachedData();
check(key, value);
}
}
}
}
}
void check(String key, Object value) {
String id = getID(key, value);
String attType = "string";
if (containsKey(id))
return;
if (value instanceof Integer || value instanceof Short)
attType = "integer";
else if (value instanceof Long)
attType = "long";
else if (value instanceof Float)
attType = "float";
else if (value instanceof Double)
attType = "double";
else if (value instanceof Boolean)
attType = "boolean";
else if (value instanceof URL || value instanceof URI)
attType = "anyURI";
else if (value.getClass().isArray() || value instanceof Collection)
attType = "liststring";
put(id, new GEXFAttribute(key, attType));
}
String getID(String key, Object value) {
return String.format("%s@%s", key, value.getClass().getName());
}
void export(XMLStreamWriter stream) throws XMLStreamException {
if (size() == 0)
return;
startElement(stream, "attributes");
stream.writeAttribute("class", type);
for (GEXFAttribute a : values()) {
startElement(stream, "attribute");
stream.writeAttribute("id", Integer.toString(a.index));
stream.writeAttribute("title", a.key);
stream.writeAttribute("type", a.type);
endElement(stream, true);
}
endElement(stream, size() == 0);
}
void push(XMLStreamWriter stream, Element e, String key) throws XMLStreamException {
String id = getID(key, e.getAttribute(key));
GEXFAttribute a = get(id);
if (a == null) {
// TODO
return;
}
startElement(stream, "attvalue");
stream.writeAttribute("for", Integer.toString(a.index));
stream.writeAttribute("value", e.getAttribute(key).toString());
endElement(stream, true);
}
void push(XMLStreamWriter stream, String elementId, GraphSpells spells) throws XMLStreamException {
CumulativeAttributes attr;
if (type.equals("node"))
attr = spells.getNodeAttributes(elementId);
else
attr = spells.getEdgeAttributes(elementId);
for (String key : attr.getAttributes()) {
for (Spell s : attr.getAttributeSpells(key)) {
Object value = s.getAttachedData();
String id = getID(key, value);
GEXFAttribute a = get(id);
if (a == null) {
// TODO
return;
}
startElement(stream, "attvalue");
stream.writeAttribute("for", Integer.toString(a.index));
stream.writeAttribute("value", value.toString());
putSpellAttributes(s);
endElement(stream, true);
}
}
}
}
}
