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High-performance Java Dataframe with integrated columnar storage (fork of tablesaw)

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package org.datavec.dataframe.api;

import com.google.common.base.Preconditions;
import com.google.common.base.Strings;
import it.unimi.dsi.fastutil.ints.*;
import org.datavec.dataframe.columns.AbstractColumn;
import org.datavec.dataframe.columns.Column;
import org.datavec.dataframe.columns.DateColumnUtils;
import org.datavec.dataframe.columns.IntColumnUtils;
import org.datavec.dataframe.columns.packeddata.PackedLocalDate;
import org.datavec.dataframe.columns.packeddata.PackedLocalDateTime;
import org.datavec.dataframe.columns.packeddata.PackedLocalTime;
import org.datavec.dataframe.filtering.IntBiPredicate;
import org.datavec.dataframe.filtering.IntPredicate;
import org.datavec.dataframe.filtering.LocalDatePredicate;
import org.datavec.dataframe.io.TypeUtils;
import org.datavec.dataframe.store.ColumnMetadata;
import org.datavec.dataframe.util.BitmapBackedSelection;
import org.datavec.dataframe.util.ReverseIntComparator;
import org.datavec.dataframe.util.Selection;

import java.nio.ByteBuffer;
import java.time.LocalDate;
import java.time.LocalTime;
import java.time.format.DateTimeFormatter;
import java.time.format.DateTimeParseException;
import java.util.*;

/**
 * A column in a base table that contains float values
 */
public class DateColumn extends AbstractColumn implements DateColumnUtils {

    public static final int MISSING_VALUE = (int) ColumnType.LOCAL_DATE.getMissingValue();

    private static final int DEFAULT_ARRAY_SIZE = 128;

    private static final int BYTE_SIZE = 4;

    private IntArrayList data;

    /**
     * The formatter chosen to parse dates for this particular column
     */
    private DateTimeFormatter selectedFormatter;

    private DateColumn(String name) {
        super(name);
        data = new IntArrayList(DEFAULT_ARRAY_SIZE);
    }

    public DateColumn(ColumnMetadata metadata) {
        super(metadata);
        data = new IntArrayList(DEFAULT_ARRAY_SIZE);
    }

    private DateColumn(String name, int initialSize) {
        super(name);
        data = new IntArrayList(initialSize);
    }

    public int size() {
        return data.size();
    }

    @Override
    public ColumnType type() {
        return ColumnType.LOCAL_DATE;
    }

    public void add(int f) {
        data.add(f);
    }

    public IntArrayList data() {
        return data;
    }

    public void set(int index, int value) {
        data.set(index, value);
    }

    public void add(LocalDate f) {
        add(PackedLocalDate.pack(f));
    }

    @Override
    public String getString(int row) {
        return PackedLocalDate.toDateString(getInt(row));
    }

    @Override
    public DateColumn emptyCopy() {
        DateColumn column = DateColumn.create(name());
        column.setComment(comment());
        return column;
    }

    @Override
    public DateColumn emptyCopy(int rowSize) {
        DateColumn column = new DateColumn(name(), rowSize);
        column.setComment(comment());
        return column;
    }

    @Override
    public void clear() {
        data.clear();
    }

    @Override
    public DateColumn copy() {
        DateColumn column = DateColumn.create(name(), data);
        column.setComment(comment());
        return column;
    }

    @Override
    public void sortAscending() {
        Arrays.parallelSort(data.elements());
    }

    @Override
    public void sortDescending() {
        IntArrays.parallelQuickSort(data.elements(), reverseIntComparator);
    }

    IntComparator reverseIntComparator = new IntComparator() {

        @Override
        public int compare(Integer o2, Integer o1) {
            return (o1 < o2 ? -1 : (o1.equals(o2) ? 0 : 1));
        }

        @Override
        public int compare(int o2, int o1) {
            return (o1 < o2 ? -1 : (o1 == o2 ? 0 : 1));
        }
    };

    @Override
    public int countUnique() {
        IntSet ints = new IntOpenHashSet(size());
        for (int i = 0; i < size(); i++) {
            ints.add(data.getInt(i));
        }
        return ints.size();
    }

    @Override
    public DateColumn unique() {
        IntSet ints = new IntOpenHashSet(data.size());
        for (int i = 0; i < size(); i++) {
            ints.add(data.getInt(i));
        }
        return DateColumn.create(name() + " Unique values", IntArrayList.wrap(ints.toIntArray()));
    }

    public LocalDate firstElement() {
        if (isEmpty()) {
            return null;
        }
        return PackedLocalDate.asLocalDate(getInt(0));
    }

    public LocalDate max() {
        int max;
        int missing = Integer.MIN_VALUE;
        if (!isEmpty()) {
            max = getInt(0);
        } else {
            return null;
        }
        for (int aData : data) {
            if (missing != aData) {
                max = (max > aData) ? max : aData;
            }
        }

        if (missing == max) {
            return null;
        }
        return PackedLocalDate.asLocalDate(max);
    }

    public LocalDate min() {
        int min;
        int missing = Integer.MIN_VALUE;

        if (!isEmpty()) {
            min = getInt(0);
        } else {
            return null;
        }
        for (int aData : data) {
            if (missing != aData) {
                min = (min < aData) ? min : aData;
            }
        }
        if (Integer.MIN_VALUE == min) {
            return null;
        }
        return PackedLocalDate.asLocalDate(min);
    }

    public CategoryColumn dayOfWeek() {
        CategoryColumn newColumn = CategoryColumn.create(this.name() + " day of week");
        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            if (c1 == DateColumn.MISSING_VALUE) {
                newColumn.add(null);
            } else {
                newColumn.add(PackedLocalDate.getDayOfWeek(c1).toString());
            }
        }
        return newColumn;
    }

    public ShortColumn dayOfWeekValue() {
        ShortColumn newColumn = ShortColumn.create(this.name() + " day of week", this.size());
        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            if (c1 == (DateColumn.MISSING_VALUE)) {
                newColumn.set(r, ShortColumn.MISSING_VALUE);
            } else {
                newColumn.add((short) PackedLocalDate.getDayOfWeek(c1).getValue());
            }
        }
        return newColumn;
    }


    public ShortColumn dayOfMonth() {
        ShortColumn newColumn = ShortColumn.create(this.name() + " day of month");
        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            if (c1 == DateColumn.MISSING_VALUE) {
                newColumn.add(ShortColumn.MISSING_VALUE);
            } else {
                newColumn.add(PackedLocalDate.getDayOfMonth(c1));
            }
        }
        return newColumn;
    }

    public ShortColumn dayOfYear() {
        ShortColumn newColumn = ShortColumn.create(this.name() + " day of month");
        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            if (c1 == DateColumn.MISSING_VALUE) {
                newColumn.add(ShortColumn.MISSING_VALUE);
            } else {
                newColumn.add((short) PackedLocalDate.getDayOfYear(c1));
            }
        }
        return newColumn;
    }

    public ShortColumn monthValue() {
        ShortColumn newColumn = ShortColumn.create(this.name() + " month");

        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            if (c1 == DateColumn.MISSING_VALUE) {
                newColumn.add(ShortColumn.MISSING_VALUE);
            } else {
                newColumn.add(PackedLocalDate.getMonthValue(c1));
            }
        }
        return newColumn;
    }

    public CategoryColumn month() {
        CategoryColumn newColumn = CategoryColumn.create(this.name() + " month");

        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            if (c1 == DateColumn.MISSING_VALUE) {
                newColumn.add(CategoryColumn.MISSING_VALUE);
            } else {
                newColumn.add(PackedLocalDate.getMonth(c1).name());
            }
        }
        return newColumn;
    }

    public ShortColumn year() {
        ShortColumn newColumn = ShortColumn.create(this.name() + " year");
        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            if (c1 == MISSING_VALUE) {
                newColumn.add(ShortColumn.MISSING_VALUE);
            } else {
                newColumn.add(PackedLocalDateTime.getYear(PackedLocalDateTime.date(c1)));
            }
        }
        return newColumn;
    }

    public LocalDate get(int index) {
        return PackedLocalDate.asLocalDate(getInt(index));
    }

    public static DateColumn create(String name) {
        return new DateColumn(name);
    }

    @Override
    public boolean isEmpty() {
        return data.isEmpty();
    }

    @Override
    public IntComparator rowComparator() {
        return comparator;
    }

    IntComparator comparator = new IntComparator() {

        @Override
        public int compare(Integer r1, Integer r2) {
            return compare((int) r1, (int) r2);
        }

        @Override
        public int compare(int r1, int r2) {
            int f1 = getInt(r1);
            int f2 = getInt(r2);
            return Integer.compare(f1, f2);
        }
    };

    public static DateColumn create(String columnName, IntArrayList dates) {
        DateColumn column = new DateColumn(columnName, dates.size());
        column.data.addAll(dates);
        return column;
    }

    /**
     * Returns a PackedDate as converted from the given string
     *
     * @param value A string representation of a date
     * @throws DateTimeParseException if no parser can be found for the date format
     */
    public int convert(String value) {
        if (Strings.isNullOrEmpty(value) || TypeUtils.MISSING_INDICATORS.contains(value) || value.equals("-1")) {
            return (int) ColumnType.LOCAL_DATE.getMissingValue();
        }
        value = Strings.padStart(value, 4, '0');

        if (selectedFormatter == null) {
            selectedFormatter = TypeUtils.getDateFormatter(value);
        }
        LocalDate date;
        try {
            date = LocalDate.parse(value, selectedFormatter);
        } catch (DateTimeParseException e) {
            selectedFormatter = TypeUtils.DATE_FORMATTER;
            date = LocalDate.parse(value, selectedFormatter);
        }
        return PackedLocalDate.pack(date);
    }

    public void addCell(String string) {
        try {
            add(convert(string));
        } catch (NullPointerException e) {
            throw new RuntimeException(name() + ": " + string + ": " + e.getMessage());
        }
    }

    public int getInt(int index) {
        return data.getInt(index);
    }

    public Selection isEqualTo(LocalDate value) {
        int packed = PackedLocalDate.pack(value);
        return select(IntColumnUtils.isEqualTo, packed);
    }

    /**
     * Returns a bitmap flagging the records for which the value in this column is equal to the value in the given
     * column
     * Columnwise isEqualTo.
     */
    public Selection isEqualTo(DateColumn column) {
        Selection results = new BitmapBackedSelection();
        int i = 0;
        IntIterator intIterator = column.intIterator();
        for (int next : data) {
            if (next == intIterator.nextInt()) {
                results.add(i);
            }
            i++;
        }
        return results;
    }

    /**
     * Returns a table of dates and the number of observations of those dates
     */
    @Override
    public Table summary() {

        Table table = Table.create("Column: " + name());
        CategoryColumn measure = CategoryColumn.create("Measure");
        CategoryColumn value = CategoryColumn.create("Value");
        table.addColumn(measure);
        table.addColumn(value);

        measure.add("Count");
        value.add(String.valueOf(size()));

        measure.add("Missing");
        value.add(String.valueOf(countMissing()));

        measure.add("Earliest");
        value.add(String.valueOf(min()));

        measure.add("Latest");
        value.add(String.valueOf(max()));

        return table;
    }

    /**
     * Returns a DateTime column where each value consists of the dates from this column combined with the corresponding
     * times from the other column
     */
    public DateTimeColumn atTime(TimeColumn c) {
        DateTimeColumn newColumn = DateTimeColumn.create(this.name() + " " + c.name());
        for (int r = 0; r < this.size(); r++) {
            int c1 = this.getInt(r);
            int c2 = c.getInt(r);
            if (c1 == MISSING_VALUE || c2 == TimeColumn.MISSING_VALUE) {
                newColumn.add(DateTimeColumn.MISSING_VALUE);
            } else {
                LocalDate value1 = PackedLocalDate.asLocalDate(c1);
                LocalTime time = PackedLocalTime.asLocalTime(c2);
                newColumn.add(PackedLocalDateTime.pack(value1, time));
            }
        }
        return newColumn;
    }

    public Selection isAfter(int value) {
        return select(PackedLocalDate::isAfter, value);
    }

    public Selection isAfter(LocalDate value) {
        int packed = PackedLocalDate.pack(value);
        return select(PackedLocalDate::isAfter, packed);
    }

    public Selection isBefore(int value) {
        return select(PackedLocalDate::isBefore, value);
    }

    public Selection isBefore(LocalDate value) {
        int packed = PackedLocalDate.pack(value);
        return select(PackedLocalDate::isBefore, packed);
    }

    public Selection isOnOrBefore(LocalDate value) {
        int packed = PackedLocalDate.pack(value);
        return select(PackedLocalDate::isOnOrBefore, packed);
    }

    public Selection isOnOrBefore(int value) {
        return select(PackedLocalDate::isOnOrBefore, value);
    }

    public Selection isOnOrAfter(LocalDate value) {
        int packed = PackedLocalDate.pack(value);
        return select(PackedLocalDate::isOnOrAfter, packed);
    }

    public Selection isOnOrAfter(int value) {
        return select(PackedLocalDate::isOnOrAfter, value);
    }

    public Selection isMonday() {
        return select(PackedLocalDate::isMonday);
    }

    public Selection isTuesday() {
        return select(PackedLocalDate::isTuesday);
    }

    public Selection isWednesday() {
        return select(PackedLocalDate::isWednesday);
    }

    public Selection isThursday() {
        return select(PackedLocalDate::isThursday);
    }

    public Selection isFriday() {
        return select(PackedLocalDate::isFriday);
    }

    public Selection isSaturday() {
        return select(PackedLocalDate::isSaturday);
    }

    public Selection isSunday() {
        return select(PackedLocalDate::isSunday);
    }

    public Selection isInJanuary() {
        return select(PackedLocalDate::isInJanuary);
    }

    public Selection isInFebruary() {
        return select(PackedLocalDate::isInFebruary);
    }

    public Selection isInMarch() {
        return select(PackedLocalDate::isInMarch);
    }

    public Selection isInApril() {
        return select(PackedLocalDate::isInApril);
    }

    public Selection isInMay() {
        return select(PackedLocalDate::isInMay);
    }

    public Selection isInJune() {
        return select(PackedLocalDate::isInJune);
    }

    public Selection isInJuly() {
        return select(PackedLocalDate::isInJuly);
    }

    public Selection isInAugust() {
        return select(PackedLocalDate::isInAugust);
    }

    public Selection isInSeptember() {
        return select(PackedLocalDate::isInSeptember);
    }

    public Selection isInOctober() {
        return select(PackedLocalDate::isInOctober);
    }

    public Selection isInNovember() {
        return select(PackedLocalDate::isInNovember);
    }

    public Selection isInDecember() {
        return select(PackedLocalDate::isInDecember);
    }

    public Selection isFirstDayOfMonth() {
        return select(PackedLocalDate::isFirstDayOfMonth);
    }

    public Selection isLastDayOfMonth() {
        return select(PackedLocalDate::isLastDayOfMonth);
    }

    public Selection isInQ1() {
        return select(PackedLocalDate::isInQ1);
    }

    public Selection isInQ2() {
        return select(PackedLocalDate::isInQ2);
    }

    public Selection isInQ3() {
        return select(PackedLocalDate::isInQ3);
    }

    public Selection isInQ4() {
        return select(PackedLocalDate::isInQ4);
    }

    public Selection isInYear(int year) {
        return select(PackedLocalDate::isInYear, year);
    }

    public String print() {
        StringBuilder builder = new StringBuilder();
        builder.append(title());
        for (int next : data) {
            builder.append(String.valueOf(PackedLocalDate.asLocalDate(next)));
            builder.append('\n');
        }
        return builder.toString();
    }

    @Override
    public Selection isMissing() {
        return select(isMissing);
    }

    /**
     * Returns the count of missing values in this column
     */
    @Override
    public int countMissing() {
        int count = 0;
        for (int i = 0; i < size(); i++) {
            if (getInt(i) == MISSING_VALUE) {
                count++;
            }
        }
        return count;
    }

    @Override
    public Selection isNotMissing() {
        return select(isNotMissing);
    }

    @Override
    public String toString() {
        return "LocalDate column: " + name();
    }

    @Override
    public void append(Column column) {
        Preconditions.checkArgument(column.type() == this.type());
        DateColumn intColumn = (DateColumn) column;
        for (int i = 0; i < intColumn.size(); i++) {
            add(intColumn.getInt(i));
        }
    }

    public DateColumn selectIf(LocalDatePredicate predicate) {
        DateColumn column = emptyCopy();
        IntIterator iterator = intIterator();
        while (iterator.hasNext()) {
            int next = iterator.nextInt();
            if (predicate.test(PackedLocalDate.asLocalDate(next))) {
                column.add(next);
            }
        }
        return column;
    }

    /**
     * This version operates on predicates that treat the given IntPredicate as operating on a packed local time
     * This is much more efficient that using a LocalTimePredicate, but requires that the developer understand the
     * semantics of packedLocalTimes
     */
    public DateColumn selectIf(IntPredicate predicate) {
        DateColumn column = emptyCopy();
        IntIterator iterator = intIterator();
        while (iterator.hasNext()) {
            int next = iterator.nextInt();
            if (predicate.test(next)) {
                column.add(next);
            }
        }
        return column;
    }

    /**
     * Returns the largest ("top") n values in the column
     *
     * @param n The maximum number of records to return. The actual number will be smaller if n is greater than the
     *          number of observations in the column
     * @return A list, possibly empty, of the largest observations
     */
    public List top(int n) {
        List top = new ArrayList<>();
        int[] values = data.toIntArray();
        IntArrays.parallelQuickSort(values, ReverseIntComparator.instance());
        for (int i = 0; i < n && i < values.length; i++) {
            top.add(PackedLocalDate.asLocalDate(values[i]));
        }
        return top;
    }

    /**
     * Returns the smallest ("bottom") n values in the column
     *
     * @param n The maximum number of records to return. The actual number will be smaller if n is greater than the
     *          number of observations in the column
     * @return A list, possibly empty, of the smallest n observations
     */
    public List bottom(int n) {
        List bottom = new ArrayList<>();
        int[] values = data.toIntArray();
        IntArrays.parallelQuickSort(values);
        for (int i = 0; i < n && i < values.length; i++) {
            bottom.add(PackedLocalDate.asLocalDate(values[i]));
        }
        return bottom;
    }

    public IntIterator intIterator() {
        return data.iterator();
    }

    public Selection select(IntPredicate predicate) {
        Selection selection = new BitmapBackedSelection();
        for (int idx = 0; idx < data.size(); idx++) {
            int next = data.getInt(idx);
            if (predicate.test(next)) {
                selection.add(idx);
            }
        }
        return selection;
    }

    public Selection select(IntBiPredicate predicate, int value) {
        Selection selection = new BitmapBackedSelection();
        for (int idx = 0; idx < data.size(); idx++) {
            int next = data.getInt(idx);
            if (predicate.test(next, value)) {
                selection.add(idx);
            }
        }
        return selection;
    }

    public Set asSet() {
        Set dates = new HashSet<>();
        DateColumn unique = unique();
        for (LocalDate d : unique) {
            dates.add(d);
        }
        return dates;
    }

    public DateTimeColumn with(TimeColumn timeColumn) {
        String dateTimeColumnName = name() + " : " + timeColumn.name();
        DateTimeColumn dateTimeColumn = new DateTimeColumn(dateTimeColumnName, size());
        for (int row = 0; row < size(); row++) {
            int date = getInt(row);
            int time = timeColumn.getInt(row);
            long packedLocalDateTime = PackedLocalDateTime.create(date, time);
            dateTimeColumn.add(packedLocalDateTime);
        }
        return dateTimeColumn;
    }

    public boolean contains(LocalDate localDate) {
        int date = PackedLocalDate.pack(localDate);
        return data().contains(date);
    }

    @Override
    public int byteSize() {
        return BYTE_SIZE;
    }

    /**
     * Returns the contents of the cell at rowNumber as a byte[]
     */
    @Override
    public byte[] asBytes(int rowNumber) {
        return ByteBuffer.allocate(4).putInt(getInt(rowNumber)).array();
    }

    /**
     * Returns an iterator over elements of type {@code T}.
     *
     * @return an Iterator.
     */
    @Override
    public Iterator iterator() {

        return new Iterator() {

            IntIterator intIterator = intIterator();

            @Override
            public boolean hasNext() {
                return intIterator.hasNext();
            }

            @Override
            public LocalDate next() {
                return PackedLocalDate.asLocalDate(intIterator.next());
            }
        };
    }

    @Override
    public DateColumn difference() {
        throw new UnsupportedOperationException("DateTimeColumn.difference() currently not supported");
        /*
        DateColumn returnValue = new DateColumn(this.name(), data.size());
        returnValue.add(DateColumn.MISSING_VALUE);
        for (int current = 1; current > data.size(); current++) {
            LocalDate currentValue = get(current);
            LocalDate nextValue = get(current+1);
            Duration duration = Duration.between(currentValue, nextValue);
            LocalDateTime date =
                    LocalDateTime.ofInstant(Instant.ofEpochMilli(duration.toMillis()), ZoneId.systemDefault());
            returnValue.add(date.toLocalDate());
        }
        return returnValue;
          */
    }

}




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