org.dishevelled.bio.alignment.sam.SamParseAdapter Maven / Gradle / Ivy
/*
dsh-bio-alignment Aligments.
Copyright (c) 2013-2019 held jointly by the individual authors.
This library is free software; you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License as published
by the Free Software Foundation; either version 3 of the License, or (at
your option) any later version.
This library is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; with out even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this library; if not, write to the Free Software Foundation,
Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
> http://www.fsf.org/licensing/licenses/lgpl.html
> http://www.opensource.org/licenses/lgpl-license.php
*/
package org.dishevelled.bio.alignment.sam;
import java.io.IOException;
/**
* Abstract implementation of SamParseListener.
*
* @since 1.1
* @author Michael Heuer
*/
public class SamParseAdapter implements SamParseListener {
@Override
public void lineNumber(final long lineNumber) throws IOException {
// empty
}
@Override
public void headerLine(final String headerLine) throws IOException {
// empty
}
@Override
public void qname(final String qname) throws IOException {
// empty
}
@Override
public void flag(final int flag) throws IOException {
// empty
}
@Override
public void rname(final String rname) throws IOException {
// empty
}
@Override
public void pos(final int pos) throws IOException {
// empty
}
@Override
public void mapq(final int mapq) throws IOException {
// empty
}
@Override
public void cigar(final String cigar) throws IOException {
// empty
}
@Override
public void rnext(final String rnext) throws IOException {
// empty
}
@Override
public void pnext(final int pnext) throws IOException {
// empty
}
@Override
public void tlen(final int tlen) throws IOException {
// empty
}
@Override
public void seq(final String seq) throws IOException {
// empty
}
@Override
public void qual(final String qual) throws IOException {
// empty
}
@Override
public void field(final String tag, final String type, final String value) throws IOException {
// empty
}
@Override
public void arrayField(final String tag, final String type, final String arrayType, final String... values) throws IOException {
// empty
}
@Override
public boolean complete() throws IOException {
return true;
}
}
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