org.dishevelled.bio.variant.vcf.header.VcfPedigreeHeaderLine Maven / Gradle / Ivy
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/*
dsh-bio-variant Variants.
Copyright (c) 2013-2024 held jointly by the individual authors.
This library is free software; you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License as published
by the Free Software Foundation; either version 3 of the License, or (at
your option) any later version.
This library is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; with out even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this library; if not, write to the Free Software Foundation,
Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
> http://www.fsf.org/licensing/licenses/lgpl.html
> http://www.opensource.org/licenses/lgpl-license.php
*/
package org.dishevelled.bio.variant.vcf.header;
import static com.google.common.base.Preconditions.checkArgument;
import static com.google.common.base.Preconditions.checkNotNull;
import static org.dishevelled.bio.variant.vcf.header.VcfHeaderLineParser.parseEntries;
import java.util.Iterator;
import java.util.Map;
import javax.annotation.concurrent.Immutable;
import com.google.common.collect.ImmutableListMultimap;
import com.google.common.collect.ListMultimap;
/**
* VCF PEDIGREE header line.
*
* @author Michael Heuer
*/
@Immutable
public final class VcfPedigreeHeaderLine {
/** Header line attributes. */
private final ListMultimap attributes;
/**
* Create a new VCF PEDIGREE header line.
*
* @param attributes header line attributes, must not be null
*/
VcfPedigreeHeaderLine(final ListMultimap attributes) {
checkNotNull(attributes);
this.attributes = ImmutableListMultimap.copyOf(attributes);
}
/**
* Return the attributes for this VCF PEDIGREE header line.
*
* @return the attributes for this VCF PEDIGREE header line
*/
public ListMultimap getAttributes() {
return attributes;
}
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
sb.append("##PEDIGREE=<");
for (Iterator> entries = attributes.entries().iterator(); entries.hasNext(); ) {
Map.Entry entry = entries.next();
sb.append(entry.getKey());
sb.append("=\"");
sb.append(entry.getValue());
sb.append("\"");
if (entries.hasNext()) {
sb.append(",");
}
}
sb.append(">");
return sb.toString();
}
/**
* Parse the specified value into a VCF PEDIGREE header line.
*
* @param value value, must not be null
* @return the specified value parsed into a VCF PEDIGREE header line
*/
public static VcfPedigreeHeaderLine valueOf(final String value) {
checkNotNull(value);
checkArgument(value.startsWith("##PEDIGREE="));
ListMultimap entries = parseEntries(value.replace("##PEDIGREE=", ""));
return new VcfPedigreeHeaderLine(entries);
}
}
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