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org.dspace.rdf.conversion.SimpleDSORelationsConverterPlugin Maven / Gradle / Ivy

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/**
 * The contents of this file are subject to the license and copyright
 * detailed in the LICENSE and NOTICE files at the root of the source
 * tree and available online at
 *
 * http://www.dspace.org/license/
 */
package org.dspace.rdf.conversion;

import java.io.IOException;
import java.io.InputStream;
import java.io.UnsupportedEncodingException;
import java.sql.SQLException;
import java.util.Iterator;
import java.util.List;

import org.apache.commons.lang3.StringUtils;
import org.apache.jena.rdf.model.Model;
import org.apache.jena.rdf.model.ModelFactory;
import org.apache.jena.util.FileManager;
import org.apache.jena.util.FileUtils;
import org.apache.logging.log4j.Logger;
import org.dspace.app.util.Util;
import org.dspace.content.Bitstream;
import org.dspace.content.Bundle;
import org.dspace.content.Collection;
import org.dspace.content.Community;
import org.dspace.content.DSpaceObject;
import org.dspace.content.Item;
import org.dspace.content.Site;
import org.dspace.content.service.BitstreamService;
import org.dspace.content.service.CommunityService;
import org.dspace.content.service.ItemService;
import org.dspace.content.service.SiteService;
import org.dspace.core.Constants;
import org.dspace.core.Context;
import org.dspace.rdf.RDFUtil;
import org.dspace.services.ConfigurationService;
import org.springframework.beans.factory.annotation.Autowired;

/**
 * @author Pascal-Nicolas Becker (dspace -at- pascal -hyphen- becker -dot- de)
 */
public class SimpleDSORelationsConverterPlugin
    implements ConverterPlugin {
    public static final String SIMPLE_RELATIONS_PREFIXES_KEY = "rdf.simplerelations.prefixes";
    public static final String SIMPLE_RELATIONS_SITE2COMMUNITY_KEY = "rdf.simplerelations.site2community";
    public static final String SIMPLE_RELATIONS_COMMUNITY2SITE_KEY = "rdf.simplerelations.community2site";
    public static final String SIMPLE_RELATIONS_COMMUNITY2SUBCOMMUNITY_KEY = "rdf.simplerelations" +
        ".community2subcommunity";
    public static final String SIMPLE_RELATIONS_SUBCOMMUNITY2COMMUNITY_KEY = "rdf.simplerelations" +
        ".subcommunity2community";
    public static final String SIMPLE_RELATIONS_COMMUNITY2COLLECTION_KEY = "rdf.simplerelations.community2collection";
    public static final String SIMPLE_RELATIONS_COLLECTION2COMMUNITY_KEY = "rdf.simplerelations.collection2community";
    public static final String SIMPLE_RELATIONS_COLLECTION2ITEM_KEY = "rdf.simplerelations.collection2item";
    public static final String SIMPLE_RELATIONS_ITEM2COLLECTION_KEY = "rdf.simplerelations.item2collection";
    public static final String SIMPLE_RELATIONS_ITEM2BITSTREAM_KEY = "rdf.simplerelations.item2bitstream";


    private static final Logger log =
            org.apache.logging.log4j.LogManager.getLogger(SimpleDSORelationsConverterPlugin.class);

    @Autowired(required = true)
    protected BitstreamService bitstreamService;
    @Autowired(required = true)
    protected ItemService itemService;
    @Autowired(required = true)
    protected CommunityService communityService;
    @Autowired(required = true)
    protected SiteService siteService;
    @Autowired(required = true)
    protected ConfigurationService configurationService;

    /**
     * Loads the prefixes that should be used by the
     * SimpleDSORelationsConverterPlugin. Please remember to close the model
     * returned by this method.
     *
     * @return A model containing the content of the file used to configure the
     * RDF-Prefixes that should be used by this plugin.
     */
    protected Model getPrefixes() {
        Model m = ModelFactory.createDefaultModel();
        String prefixesPath = configurationService
            .getProperty(SIMPLE_RELATIONS_PREFIXES_KEY);
        if (!StringUtils.isEmpty(prefixesPath)) {
            InputStream is = FileManager.get().open(prefixesPath);
            if (is == null) {
                log.warn("Cannot find file '" + prefixesPath + "', ignoring...");
            } else {
                m.read(is, null, FileUtils.guessLang(prefixesPath));
                try {
                    is.close();
                } catch (IOException ex) {
                    // nothing to do here.
                }
            }
        } else {
            log.warn("Configuration does not contain path to prefixes file for "
                         + "SimpleDSORelationsConverterPlugin. Will proceed without "
                         + "prefixes.");
        }
        return m;
    }

    @Override
    public void setConfigurationService(ConfigurationService configurationService) {
        this.configurationService = configurationService;
    }

    @Override
    public Model convert(Context context, DSpaceObject dso)
        throws SQLException {

        switch (dso.getType()) {
            case (Constants.SITE):
                return convertSite(context, (Site) dso);
            case (Constants.COMMUNITY):
                return convertCommunity(context, (Community) dso);
            case (Constants.COLLECTION):
                return convertCollection(context, (Collection) dso);
            case (Constants.ITEM):
                return convertItem(context, (Item) dso);
            default:
                return null;
        }
    }

    public Model convertSite(Context context, Site site)
        throws SQLException {
        String[] site2community = configurationService.getArrayProperty(SIMPLE_RELATIONS_SITE2COMMUNITY_KEY);
        if (site2community == null || site2community.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from the repository (SITE) to the top level "
                         + "communities is disabled. Won't link from the repostitory "
                         + "(SITE) to the top level communities.");
            return null;
        }

        Model m = ModelFactory.createDefaultModel();
        Model prefixes = this.getPrefixes();
        m.setNsPrefixes(prefixes);
        prefixes.close();

        String myId = RDFUtil.generateIdentifier(context, site);
        if (myId == null) {
            return null;
        }

        List topLevelCommies = communityService.findAllTop(context);
        for (Community community : topLevelCommies) {
            if (!RDFUtil.isPublicBoolean(context, community)) {
                continue;
            }
            String id = RDFUtil.generateIdentifier(context, community);
            if (id == null) {
                continue;
            }
            for (String link : site2community) {
                m.add(m.createResource(myId),
                      m.createProperty(link),
                      m.createResource(id));
            }
        }

        if (m.isEmpty()) {
            log.info("There were no public sub communities we could link to.");
            m.close();
            return null;
        }
        return m;
    }

    public Model convertCommunity(Context context, Community community)
        throws SQLException {
        String[] community2site = configurationService.getArrayProperty(SIMPLE_RELATIONS_COMMUNITY2SITE_KEY);
        if (community2site == null || community2site.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from the top level communities to the repository "
                         + "(SITE) is disabled. Won't link from the top level "
                         + "communities to the repository (SITE).");
            // don't return here, as we might have to add other links.
            // ensure community2site is not null
            community2site = new String[] {};
        }

        String[] community2subcommunity = configurationService
            .getArrayProperty(SIMPLE_RELATIONS_COMMUNITY2SUBCOMMUNITY_KEY);
        if (community2subcommunity == null || community2subcommunity.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from communities to subcommunities was disabled. "
                         + "Won't link from communities to subcommunities.");
            // don't return here, as we might have to add other links.
            // ensure community2subcommunity is not null
            community2subcommunity = new String[] {};
        }

        String[] subcommunity2community = configurationService
            .getArrayProperty(SIMPLE_RELATIONS_SUBCOMMUNITY2COMMUNITY_KEY);
        if (subcommunity2community == null || subcommunity2community.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from subcommunities to communities was disabled. "
                         + "Won't link from subcommunities to communities.");
            // don't return here, as we might have to add other links.
            // ensure subcommunity2community is not null
            subcommunity2community = new String[] {};
        }

        String[] community2collection = configurationService
            .getArrayProperty(SIMPLE_RELATIONS_COMMUNITY2COLLECTION_KEY);
        if (community2collection == null || community2collection.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from communities to collections was disabled. "
                         + "Won't link from collections to subcommunities.");
            // don't return here, as we might have to add other links.
            // ensure community2collection is not null
            community2collection = new String[] {};
        }
        if (community2site.length == 0 && community2subcommunity.length == 0
            && subcommunity2community.length == 0 && community2collection.length == 0) {
            return null;
        }

        Model m = ModelFactory.createDefaultModel();
        Model prefixes = this.getPrefixes();
        m.setNsPrefixes(prefixes);
        prefixes.close();

        String myId = RDFUtil.generateIdentifier(context, community);
        if (myId == null) {
            return null;
        }

        // add all parents
        List communityParentList = communityService.getAllParents(context, community);
        DSpaceObject[] parents = communityParentList.toArray(new DSpaceObject[communityParentList.size()]);
        // check whether this is a top level community
        if (parents.length == 0) {
            parents = new DSpaceObject[] {siteService.findSite(context)};
        }
        for (DSpaceObject parent : parents) {
            if (!RDFUtil.isPublicBoolean(context, parent)) {
                continue;
            }

            String id = RDFUtil.generateIdentifier(context, parent);
            if (id != null) {
                if (parent instanceof Site) {
                    for (String link : community2site) {
                        m.add(m.createResource(myId),
                              m.createProperty(link),
                              m.createResource(id));
                    }
                } else if (parent instanceof Community) {
                    for (String link : subcommunity2community) {
                        m.add(m.createResource(myId),
                              m.createProperty(link),
                              m.createResource(id));
                    }
                }
            }
        }

        // add all subcommunities
        for (Community sub : community.getSubcommunities()) {
            if (!RDFUtil.isPublicBoolean(context, sub)) {
                continue;
            }
            String id = RDFUtil.generateIdentifier(context, sub);
            if (id == null) {
                continue;
            }
            for (String link : community2subcommunity) {
                m.add(m.createResource(myId),
                      m.createProperty(link),
                      m.createResource(id));
            }
        }
        // add all collections.
        for (Collection col : communityService.getAllCollections(context, community)) {
            if (!RDFUtil.isPublicBoolean(context, col)) {
                continue;
            }
            String id = RDFUtil.generateIdentifier(context, col);
            if (id == null) {
                continue;
            }
            for (String link : community2collection) {
                m.add(m.createResource(myId),
                      m.createProperty(link),
                      m.createResource(id));
            }
        }

        if (m.isEmpty()) {
            m.close();
            return null;
        }
        return m;
    }

    public Model convertCollection(Context context, Collection collection)
        throws SQLException {
        String[] collection2community = configurationService
            .getArrayProperty(SIMPLE_RELATIONS_COLLECTION2COMMUNITY_KEY);
        if (collection2community == null || collection2community.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from collections to communities was disabled. "
                         + "Won't link from collections to communities.");
            // don't return here, as we might have to link to items.
            // ensure collection2community is not null
            collection2community = new String[] {};
        }

        String[] collection2item = configurationService.getArrayProperty(SIMPLE_RELATIONS_COLLECTION2ITEM_KEY);
        if (collection2item == null || collection2item.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from collections to items was disabled. "
                         + "Won't link from collections to items.");
            // don't return here, as we might have to link to communities.
            // ensure collection2item is not null
            collection2item = new String[] {};
        }
        if (collection2community.length == 0 && collection2item.length == 0) {
            return null;
        }

        Model m = ModelFactory.createDefaultModel();
        Model prefixes = this.getPrefixes();
        m.setNsPrefixes(prefixes);
        prefixes.close();

        String myId = RDFUtil.generateIdentifier(context, collection);
        if (myId == null) {
            return null;
        }

        // add all parents
        for (DSpaceObject parent : communityService.getAllParents(context, collection)) {
            if (!RDFUtil.isPublicBoolean(context, parent)) {
                continue;
            }

            String id = RDFUtil.generateIdentifier(context, parent);
            if (id != null) {
                for (String link : collection2community) {
                    m.add(m.createResource(myId),
                          m.createProperty(link),
                          m.createResource(id));
                }
            }
        }

        // add all items
        Iterator items = itemService.findAllByCollection(context, collection);
        while (items.hasNext()) {
            String id = RDFUtil.generateIdentifier(context, items.next());
            if (id != null) {
                for (String link : collection2item) {
                    m.add(m.createResource(myId),
                          m.createProperty(link),
                          m.createResource(id));
                }
            }
        }

        if (m.isEmpty()) {
            m.close();
            return null;
        }
        return m;
    }

    public Model convertItem(Context context, Item item)
        throws SQLException {
        String[] item2collection = configurationService.getArrayProperty(SIMPLE_RELATIONS_ITEM2COLLECTION_KEY);
        if (item2collection == null || item2collection.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from items to collections was disabled. "
                         + "Won't link from items to collections.");
            // don't return here, as we might have to link to bitstreams.
            // ensure item2collection is not null
            item2collection = new String[] {};
        }

        String[] item2bitstream = configurationService.getArrayProperty(SIMPLE_RELATIONS_ITEM2BITSTREAM_KEY);
        if (item2bitstream == null || item2bitstream.length == 0) {
            log.info("Either there was a problem loading the configuration or "
                         + "linking from items to bitstreams was disabled. "
                         + "Won't link from items to bitstreams.");
            // don't return here, as we might have to link to collections.
            // ensure item2bitstream is not null
            item2bitstream = new String[] {};
        }

        if (item2collection.length == 0 && item2bitstream.length == 0) {
            return null;
        }

        Model m = ModelFactory.createDefaultModel();
        Model prefixes = this.getPrefixes();
        m.setNsPrefixes(prefixes);
        prefixes.close();

        String myId = RDFUtil.generateIdentifier(context, item);
        if (myId == null) {
            return null;
        }

        // add all parents
        for (DSpaceObject parent : item.getCollections()) {
            if (!RDFUtil.isPublicBoolean(context, parent)) {
                continue;
            }

            String id = RDFUtil.generateIdentifier(context, parent);
            if (id != null) {
                for (String link : item2collection) {
                    m.add(m.createResource(myId),
                          m.createProperty(link),
                          m.createResource(id));
                }
            }
        }

        // add all items
        for (Bundle bundle : item.getBundles()) {
            // currently link only the original files
            // TODO: Discuss if LICENSEs, THUMBNAILs and/or extracted TEXTs
            // should be linked/exported as well (and if sutch a feature should
            // be configurable).
            if (bundle.getName().equals("ORIGINAL")) {
                for (Bitstream bs : bundle.getBitstreams()) {
                    if (RDFUtil.isPublicBoolean(context, bs)) {
                        String url = bitstreamURI(context, bs);
                        if (url != null) {
                            for (String link : item2bitstream) {
                                m.add(m.createResource(myId),
                                      m.createProperty(link),
                                      m.createResource(url));
                            }
                        }
                    }
                }
            }
        }

        if (m.isEmpty()) {
            m.close();
            return null;
        }
        return m;
    }

    /**
     * This methods generates a link to the provided Bitstream.
     * As bitstreams currently don't get Persistent Identifier in DSpace, we have
     * to link them using a link to the repository.
     *
     * @param context   The relevant DSpace Context.
     * @param bitstream Bitstream for which a URL should be generated.
     * @return The link to the URL or null if the Bitstream is a Community or
     * Collection logo.
     * @throws SQLException if database error
     */
    public String bitstreamURI(Context context, Bitstream bitstream)
        throws SQLException {
        DSpaceObject parent = bitstreamService.getParentObject(context, bitstream);

        if (!(parent instanceof Item)) {
            // Bitstream is a community or collection logo.
            // we currently ignore those
            return null;
        }
        String dspaceURL = configurationService.getProperty("dspace.ui.url");
        String link = "";
        try {
            // the link to the bitstream in the UI
            link = dspaceURL + "/bitstream/" + parent.getHandle() + "/"
                + bitstream.getSequenceID() + "/"
                + Util.encodeBitstreamName(bitstream.getName(), Constants.DEFAULT_ENCODING);
        } catch (UnsupportedEncodingException ex) {
            throw new RuntimeException("DSpace's default encoding is not supported.", ex);
        }
        return link;
    }

    @Override
    public boolean supports(int type) {
        switch (type) {
            case (Constants.COLLECTION):
                return true;
            case (Constants.COMMUNITY):
                return true;
            case (Constants.ITEM):
                return true;
            case (Constants.SITE):
                return true;
            default:
                return false;
        }
    }
}




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