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Protempa Framework is the core of Protempa.
/*
* #%L
* Protempa Framework
* %%
* Copyright (C) 2012 - 2013 Emory University
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
package org.protempa.dest.table;
import java.io.IOException;
import java.util.Arrays;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.logging.Level;
import java.util.logging.Logger;
import org.arp.javautil.string.StringUtil;
import org.protempa.KnowledgeSource;
import org.protempa.KnowledgeSourceCache;
import org.protempa.KnowledgeSourceReadException;
import org.protempa.ProtempaUtil;
import org.protempa.proposition.Proposition;
import org.protempa.proposition.PropositionUtil;
import org.protempa.proposition.TemporalProposition;
import org.protempa.proposition.UniqueId;
import org.protempa.proposition.comparator.AllPropositionIntervalComparator;
import org.protempa.proposition.value.Unit;
/**
*
* @author Andrew Post
*/
public final class DistanceBetweenColumnSpec extends AbstractTableColumnSpec {
private static final Comparator comp =
new AllPropositionIntervalComparator();
private final Link[] links;
private final String columnNamePrefixOverride;
private final Unit units;
public DistanceBetweenColumnSpec(Link[] links) {
this(null, links);
}
public DistanceBetweenColumnSpec(String columnNamePrefixOverride,
Link[] links) {
this(columnNamePrefixOverride, links, null);
}
public DistanceBetweenColumnSpec(String columnNamePrefixOverride,
Link[] links, Unit units) {
if (links == null) {
this.links = Util.EMPTY_LINK_ARRAY;
} else {
ProtempaUtil.checkArrayForNullElement(links, "links");
this.links = links.clone();
}
this.columnNamePrefixOverride = columnNamePrefixOverride;
this.units = units;
}
@Override
public String[] columnNames(KnowledgeSource knowledgeSource)
throws KnowledgeSourceReadException {
String headerString = this.columnNamePrefixOverride != null
? this.columnNamePrefixOverride
: generateLinksHeaderString(this.links) + "_lengthBetween";
return new String[] { headerString };
}
@Override
public void columnValues(String key, Proposition proposition,
Map> forwardDerivations,
Map> backwardDerivations,
Map references,
KnowledgeSourceCache ksCache,
TabularWriter writer) throws TabularWriterException {
Logger logger = Util.logger();
List propositions = traverseLinks(this.links,
proposition, forwardDerivations, backwardDerivations,
references, ksCache);
Collections.sort(propositions, comp);
int size = propositions.size();
if (size > 2) {
logger.log(Level.WARNING,
"There should be two or less propositions but there are {0}",
size);
}
if (size < 2) {
writer.writeNull();
return;
}
Iterator itr = propositions.iterator();
TemporalProposition first = null;
TemporalProposition second = null;
Proposition tmpFirst = itr.next();
if (tmpFirst instanceof TemporalProposition) {
first = (TemporalProposition) tmpFirst;
} else {
logger.log(Level.WARNING,
"The first proposition is not temporal: ",
tmpFirst.getId());
}
Proposition tmpSecond = itr.next();
if (tmpSecond instanceof TemporalProposition) {
second = (TemporalProposition) tmpSecond;
} else {
logger.log(Level.WARNING,
"The second proposition is not temporal: ",
tmpSecond.getId());
}
String distance = PropositionUtil
.distanceBetweenFormattedShort(first, second,
this.units);
writer.writeString(distance);
}
@Override
public void validate(KnowledgeSource knowledgeSource) throws
TableColumnSpecValidationFailedException,
KnowledgeSourceReadException {
int i = 1;
for (Link link : this.links) {
try {
link.validate(knowledgeSource);
} catch (LinkValidationFailedException ex) {
throw new TableColumnSpecValidationFailedException(
"Validation of link " + i + " failed", ex);
}
i++;
}
}
public Link[] getLinks() {
return links;
}
public String getColumnNamePrefixOverride() {
return columnNamePrefixOverride;
}
public Unit getUnits() {
return units;
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((columnNamePrefixOverride == null) ? 0 : columnNamePrefixOverride.hashCode());
result = prime * result + Arrays.hashCode(links);
result = prime * result + ((units == null) ? 0 : units.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
DistanceBetweenColumnSpec other = (DistanceBetweenColumnSpec) obj;
if (columnNamePrefixOverride == null) {
if (other.columnNamePrefixOverride != null)
return false;
} else if (!columnNamePrefixOverride.equals(other.columnNamePrefixOverride))
return false;
if (!Arrays.equals(links, other.links))
return false;
if (units == null) {
if (other.units != null)
return false;
} else if (!units.equals(other.units))
return false;
return true;
}
@Override
public String[] getInferredPropositionIds(KnowledgeSource knowledgeSource,
String[] inPropIds) throws KnowledgeSourceReadException {
Set result = new HashSet<>();
for (Link link : this.links) {
inPropIds = link.getInferredPropositionIds(knowledgeSource,
inPropIds);
org.arp.javautil.arrays.Arrays.addAll(result, inPropIds);
}
return result.toArray(new String[result.size()]);
}
}
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