ucar.nc2.iosp.netcdf3.N3raf Maven / Gradle / Ivy

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Re-packaged Unidata netCDF
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/*
 * Copyright (c) 1998-2018 John Caron and University Corporation for Atmospheric Research/Unidata
 * See LICENSE for license information.
 */
package ucar.nc2.iosp.netcdf3;

import java.nio.charset.StandardCharsets;
import ucar.ma2.*;
import ucar.nc2.iosp.Layout;
import ucar.nc2.iosp.IospHelper;
import java.nio.channels.WritableByteChannel;


/**
 * Use our RandomAccessFile class to read and write.
 * 
 * @author caron
 * @deprecated do not use
 */
@Deprecated
public class N3raf extends N3iosp {

  protected void _open(ucar.unidata.io.RandomAccessFile raf) {}

  protected void _create(ucar.unidata.io.RandomAccessFile raf) {}

  /**
   * Read data subset from file for a variable, create primitive array.
   * 
   * @param index handles skipping around in the file.
   * @param dataType dataType of the variable
   * @return primitive array with data read in
   */
  protected Object readData(Layout index, DataType dataType) throws java.io.IOException {
    return IospHelper.readDataFill(raf, index, dataType, null, -1);
  }

  /**
   * Read data subset from file for a variable, to WritableByteChannel.
   * Will send as bigendian, since thats what the underlying file has.
   * 
   * @param index handles skipping around in the file.
   * @param dataType dataType of the variable
   */
  protected long readData(Layout index, DataType dataType, WritableByteChannel out) throws java.io.IOException {
    long count = 0;
    if (dataType.getPrimitiveClassType() == byte.class || dataType == DataType.CHAR) {
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        count += raf.readToByteChannel(out, chunk.getSrcPos(), chunk.getNelems());
      }

    } else if (dataType.getPrimitiveClassType() == short.class) {
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        count += raf.readToByteChannel(out, chunk.getSrcPos(), 2 * chunk.getNelems());
      }

    } else if (dataType.getPrimitiveClassType() == int.class || (dataType == DataType.FLOAT)) {
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        count += raf.readToByteChannel(out, chunk.getSrcPos(), 4 * chunk.getNelems());
      }

    } else if ((dataType == DataType.DOUBLE) || dataType.getPrimitiveClassType() == long.class) {
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        count += raf.readToByteChannel(out, chunk.getSrcPos(), 8 * chunk.getNelems());
      }
    }

    return count;
  }

  /**
   * write data to a file for a variable.
   * 
   * @param values write this data.
   * @param index handles skipping around in the file.
   * @param dataType dataType of the variable
   */
  protected void writeData(Array values, Layout index, DataType dataType) throws java.io.IOException {
    if ((dataType == DataType.BYTE) || (dataType == DataType.CHAR)) {
      IndexIterator ii = values.getIndexIterator();
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        raf.seek(chunk.getSrcPos());
        for (int k = 0; k < chunk.getNelems(); k++)
          raf.write(ii.getByteNext());
      }
      return;

    } else if (dataType == DataType.STRING) { // LOOK not legal
      IndexIterator ii = values.getIndexIterator();
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        raf.seek(chunk.getSrcPos());
        for (int k = 0; k < chunk.getNelems(); k++) {
          String val = (String) ii.getObjectNext();
          if (val != null)
            raf.write(val.getBytes(StandardCharsets.UTF_8)); // LOOK ??
        }
      }
      return;

    } else if (dataType == DataType.SHORT) {
      IndexIterator ii = values.getIndexIterator();
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        raf.seek(chunk.getSrcPos());
        for (int k = 0; k < chunk.getNelems(); k++)
          raf.writeShort(ii.getShortNext());
      }
      return;

    } else if (dataType == DataType.INT) {
      IndexIterator ii = values.getIndexIterator();
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        raf.seek(chunk.getSrcPos());
        for (int k = 0; k < chunk.getNelems(); k++)
          raf.writeInt(ii.getIntNext());
      }
      return;

    } else if (dataType == DataType.FLOAT) {
      IndexIterator ii = values.getIndexIterator();
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        raf.seek(chunk.getSrcPos());
        for (int k = 0; k < chunk.getNelems(); k++)
          raf.writeFloat(ii.getFloatNext());
      }
      return;

    } else if (dataType == DataType.DOUBLE) {
      IndexIterator ii = values.getIndexIterator();
      while (index.hasNext()) {
        Layout.Chunk chunk = index.next();
        raf.seek(chunk.getSrcPos());
        for (int k = 0; k < chunk.getNelems(); k++)
          raf.writeDouble(ii.getDoubleNext());
      }
      return;
    }

    throw new IllegalStateException("dataType= " + dataType);
  }


}