org.geneweaver.domain.SpeciesData Maven / Gradle / Ivy
/*-
*
* Copyright 2018, 2020 The Jackson Laboratory Inc.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
* @author Matthew Gerring
*/
package org.geneweaver.domain;
import java.util.Collections;
import java.util.HashMap;
import java.util.Map;
final class SpeciesData {
// @see https://www.ncbi.nlm.nih.gov/Taxonomy/Browser
// We cannot deal with that many species in our graph for now.
// Later this map can be replaced with a service call or a larger
// cache or another mechanism.
public static final Map species;
static {
Map tmp = new HashMap<>();
tmp.put("mus musculus", 10090L);
tmp.put("homo sapiens", 9606L);
tmp.put("rattus norvegicus", 10116L);
tmp.put("danio rerio", 7955L);
tmp.put("pan troglodytes", 9598L);
species = Collections.unmodifiableMap(tmp);
}
public static Long get(String sspecies) {
if (sspecies==null) return null;
sspecies = sspecies.toLowerCase();
return species.get(sspecies);
}
}