org.genomicsdb.importer.model.ChromosomeInterval Maven / Gradle / Ivy
/*
* The MIT License (MIT)
* Copyright (c) 2016-2017 Intel Corporation
*
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* this software and associated documentation files (the "Software"), to deal in
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* the Software, and to permit persons to whom the Software is furnished to do so,
* subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
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package org.genomicsdb.importer.model;
import htsjdk.samtools.util.Locatable;
/**
* Utility class to represent a chromosome interval
* Contains 3 members - chr name, start, end (1-based)
*/
public class ChromosomeInterval implements Locatable {
private String chromosomeName;
private long begin;
private long end;
public ChromosomeInterval(final String name, final long begin, final long end) {
this.chromosomeName = name;
this.begin = begin;
this.end = end;
}
@Override
public String getContig() {
return chromosomeName;
}
@Override
public int getStart() {
return (int) begin;
}
@Override
public int getEnd() {
return (int) end;
}
}