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org.genomicsdb.model.Coordinates Maven / Gradle / Ivy
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: genomicsdb_coordinates.proto
package org.genomicsdb.model;
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
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return com.google.protobuf.GeneratedMessageV3
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return com.google.protobuf.GeneratedMessageV3
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
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public static org.genomicsdb.model.Coordinates.GenomicsDBColumn parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
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public static Builder newBuilder() {
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public static Builder newBuilder(org.genomicsdb.model.Coordinates.GenomicsDBColumn prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
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return this == DEFAULT_INSTANCE
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@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
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/**
* Protobuf type {@code GenomicsDBColumn}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:GenomicsDBColumn)
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumn_descriptor;
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protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
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// Construct using org.genomicsdb.model.Coordinates.GenomicsDBColumn.newBuilder()
private Builder() {
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
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columnCase_ = 0;
column_ = null;
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@java.lang.Override
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org.genomicsdb.model.Coordinates.GenomicsDBColumn result = new org.genomicsdb.model.Coordinates.GenomicsDBColumn(this);
int from_bitField0_ = bitField0_;
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result.bitField0_ = to_bitField0_;
result.columnCase_ = columnCase_;
onBuilt();
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com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
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@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
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@java.lang.Override
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com.google.protobuf.Descriptors.OneofDescriptor oneof) {
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com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
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public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
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if (other instanceof org.genomicsdb.model.Coordinates.GenomicsDBColumn) {
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super.mergeFrom(other);
return this;
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public Builder mergeFrom(org.genomicsdb.model.Coordinates.GenomicsDBColumn other) {
if (other == org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance()) return this;
switch (other.getColumnCase()) {
case TILEDB_COLUMN: {
setTiledbColumn(other.getTiledbColumn());
break;
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mergeContigPosition(other.getContigPosition());
break;
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break;
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this.mergeUnknownFields(other.getUnknownFields());
onChanged();
return this;
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@java.lang.Override
public final boolean isInitialized() {
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return true;
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@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
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throw new java.lang.NullPointerException();
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break;
case 8: {
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columnCase_ = 1;
break;
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case 18: {
input.readMessage(
getContigPositionFieldBuilder().getBuilder(),
extensionRegistry);
columnCase_ = 2;
break;
} // case 18
default: {
if (!super.parseUnknownField(input, extensionRegistry, tag)) {
done = true; // was an endgroup tag
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break;
} // default:
} // switch (tag)
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throw e.unwrapIOException();
} finally {
onChanged();
} // finally
return this;
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private int columnCase_ = 0;
private java.lang.Object column_;
public ColumnCase
getColumnCase() {
return ColumnCase.forNumber(
columnCase_);
}
public Builder clearColumn() {
columnCase_ = 0;
column_ = null;
onChanged();
return this;
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private int bitField0_;
/**
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*/
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/**
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*/
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return 0L;
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/**
* int64 tiledb_column = 1;
* @param value The tiledbColumn to set.
* @return This builder for chaining.
*/
public Builder setTiledbColumn(long value) {
columnCase_ = 1;
column_ = value;
onChanged();
return this;
}
/**
* int64 tiledb_column = 1;
* @return This builder for chaining.
*/
public Builder clearTiledbColumn() {
if (columnCase_ == 1) {
columnCase_ = 0;
column_ = null;
onChanged();
}
return this;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.ContigPosition, org.genomicsdb.model.Coordinates.ContigPosition.Builder, org.genomicsdb.model.Coordinates.ContigPositionOrBuilder> contigPositionBuilder_;
/**
* .ContigPosition contig_position = 2;
* @return Whether the contigPosition field is set.
*/
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public boolean hasContigPosition() {
return columnCase_ == 2;
}
/**
* .ContigPosition contig_position = 2;
* @return The contigPosition.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.ContigPosition getContigPosition() {
if (contigPositionBuilder_ == null) {
if (columnCase_ == 2) {
return (org.genomicsdb.model.Coordinates.ContigPosition) column_;
}
return org.genomicsdb.model.Coordinates.ContigPosition.getDefaultInstance();
} else {
if (columnCase_ == 2) {
return contigPositionBuilder_.getMessage();
}
return org.genomicsdb.model.Coordinates.ContigPosition.getDefaultInstance();
}
}
/**
* .ContigPosition contig_position = 2;
*/
public Builder setContigPosition(org.genomicsdb.model.Coordinates.ContigPosition value) {
if (contigPositionBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
column_ = value;
onChanged();
} else {
contigPositionBuilder_.setMessage(value);
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columnCase_ = 2;
return this;
}
/**
* .ContigPosition contig_position = 2;
*/
public Builder setContigPosition(
org.genomicsdb.model.Coordinates.ContigPosition.Builder builderForValue) {
if (contigPositionBuilder_ == null) {
column_ = builderForValue.build();
onChanged();
} else {
contigPositionBuilder_.setMessage(builderForValue.build());
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columnCase_ = 2;
return this;
}
/**
* .ContigPosition contig_position = 2;
*/
public Builder mergeContigPosition(org.genomicsdb.model.Coordinates.ContigPosition value) {
if (contigPositionBuilder_ == null) {
if (columnCase_ == 2 &&
column_ != org.genomicsdb.model.Coordinates.ContigPosition.getDefaultInstance()) {
column_ = org.genomicsdb.model.Coordinates.ContigPosition.newBuilder((org.genomicsdb.model.Coordinates.ContigPosition) column_)
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} else {
column_ = value;
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onChanged();
} else {
if (columnCase_ == 2) {
contigPositionBuilder_.mergeFrom(value);
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contigPositionBuilder_.setMessage(value);
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columnCase_ = 2;
return this;
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/**
* .ContigPosition contig_position = 2;
*/
public Builder clearContigPosition() {
if (contigPositionBuilder_ == null) {
if (columnCase_ == 2) {
columnCase_ = 0;
column_ = null;
onChanged();
}
} else {
if (columnCase_ == 2) {
columnCase_ = 0;
column_ = null;
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contigPositionBuilder_.clear();
}
return this;
}
/**
* .ContigPosition contig_position = 2;
*/
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return getContigPositionFieldBuilder().getBuilder();
}
/**
* .ContigPosition contig_position = 2;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.ContigPositionOrBuilder getContigPositionOrBuilder() {
if ((columnCase_ == 2) && (contigPositionBuilder_ != null)) {
return contigPositionBuilder_.getMessageOrBuilder();
} else {
if (columnCase_ == 2) {
return (org.genomicsdb.model.Coordinates.ContigPosition) column_;
}
return org.genomicsdb.model.Coordinates.ContigPosition.getDefaultInstance();
}
}
/**
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*/
private com.google.protobuf.SingleFieldBuilderV3<
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getContigPositionFieldBuilder() {
if (contigPositionBuilder_ == null) {
if (!(columnCase_ == 2)) {
column_ = org.genomicsdb.model.Coordinates.ContigPosition.getDefaultInstance();
}
contigPositionBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
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getParentForChildren(),
isClean());
column_ = null;
}
columnCase_ = 2;
onChanged();;
return contigPositionBuilder_;
}
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public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
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@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:GenomicsDBColumn)
}
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static {
DEFAULT_INSTANCE = new org.genomicsdb.model.Coordinates.GenomicsDBColumn();
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumn getDefaultInstance() {
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}
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public GenomicsDBColumn parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
Builder builder = newBuilder();
try {
builder.mergeFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(builder.buildPartial());
} catch (com.google.protobuf.UninitializedMessageException e) {
throw e.asInvalidProtocolBufferException().setUnfinishedMessage(builder.buildPartial());
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(e)
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}
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return PARSER;
}
@java.lang.Override
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return PARSER;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumn getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
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/**
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* Protobuf type {@code TileDBColumnInterval}
*/
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com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
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public static org.genomicsdb.model.Coordinates.TileDBColumnInterval parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
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public static org.genomicsdb.model.Coordinates.TileDBColumnInterval parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
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public static org.genomicsdb.model.Coordinates.TileDBColumnInterval parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
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public static org.genomicsdb.model.Coordinates.TileDBColumnInterval parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
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if (other instanceof org.genomicsdb.model.Coordinates.ContigInterval) {
return mergeFrom((org.genomicsdb.model.Coordinates.ContigInterval)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.genomicsdb.model.Coordinates.ContigInterval other) {
if (other == org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance()) return this;
if (other.hasContig()) {
bitField0_ |= 0x00000001;
contig_ = other.contig_;
onChanged();
}
if (other.hasBegin()) {
setBegin(other.getBegin());
}
if (other.hasEnd()) {
setEnd(other.getEnd());
}
this.mergeUnknownFields(other.getUnknownFields());
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
if (!hasContig()) {
return false;
}
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 10: {
contig_ = input.readBytes();
bitField0_ |= 0x00000001;
break;
} // case 10
case 16: {
begin_ = input.readInt64();
bitField0_ |= 0x00000002;
break;
} // case 16
case 24: {
end_ = input.readInt64();
bitField0_ |= 0x00000004;
break;
} // case 24
default: {
if (!super.parseUnknownField(input, extensionRegistry, tag)) {
done = true; // was an endgroup tag
}
break;
} // default:
} // switch (tag)
} // while (!done)
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.unwrapIOException();
} finally {
onChanged();
} // finally
return this;
}
private int bitField0_;
private java.lang.Object contig_ = "";
/**
* required string contig = 1;
* @return Whether the contig field is set.
*/
public boolean hasContig() {
return ((bitField0_ & 0x00000001) != 0);
}
/**
* required string contig = 1;
* @return The contig.
*/
public java.lang.String getContig() {
java.lang.Object ref = contig_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
if (bs.isValidUtf8()) {
contig_ = s;
}
return s;
} else {
return (java.lang.String) ref;
}
}
/**
* required string contig = 1;
* @return The bytes for contig.
*/
public com.google.protobuf.ByteString
getContigBytes() {
java.lang.Object ref = contig_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
contig_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
* required string contig = 1;
* @param value The contig to set.
* @return This builder for chaining.
*/
public Builder setContig(
java.lang.String value) {
if (value == null) {
throw new NullPointerException();
}
bitField0_ |= 0x00000001;
contig_ = value;
onChanged();
return this;
}
/**
* required string contig = 1;
* @return This builder for chaining.
*/
public Builder clearContig() {
bitField0_ = (bitField0_ & ~0x00000001);
contig_ = getDefaultInstance().getContig();
onChanged();
return this;
}
/**
* required string contig = 1;
* @param value The bytes for contig to set.
* @return This builder for chaining.
*/
public Builder setContigBytes(
com.google.protobuf.ByteString value) {
if (value == null) {
throw new NullPointerException();
}
bitField0_ |= 0x00000001;
contig_ = value;
onChanged();
return this;
}
private long begin_ ;
/**
* optional int64 begin = 2;
* @return Whether the begin field is set.
*/
@java.lang.Override
public boolean hasBegin() {
return ((bitField0_ & 0x00000002) != 0);
}
/**
* optional int64 begin = 2;
* @return The begin.
*/
@java.lang.Override
public long getBegin() {
return begin_;
}
/**
* optional int64 begin = 2;
* @param value The begin to set.
* @return This builder for chaining.
*/
public Builder setBegin(long value) {
bitField0_ |= 0x00000002;
begin_ = value;
onChanged();
return this;
}
/**
* optional int64 begin = 2;
* @return This builder for chaining.
*/
public Builder clearBegin() {
bitField0_ = (bitField0_ & ~0x00000002);
begin_ = 0L;
onChanged();
return this;
}
private long end_ ;
/**
* optional int64 end = 3;
* @return Whether the end field is set.
*/
@java.lang.Override
public boolean hasEnd() {
return ((bitField0_ & 0x00000004) != 0);
}
/**
* optional int64 end = 3;
* @return The end.
*/
@java.lang.Override
public long getEnd() {
return end_;
}
/**
* optional int64 end = 3;
* @param value The end to set.
* @return This builder for chaining.
*/
public Builder setEnd(long value) {
bitField0_ |= 0x00000004;
end_ = value;
onChanged();
return this;
}
/**
* optional int64 end = 3;
* @return This builder for chaining.
*/
public Builder clearEnd() {
bitField0_ = (bitField0_ & ~0x00000004);
end_ = 0L;
onChanged();
return this;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:ContigInterval)
}
// @@protoc_insertion_point(class_scope:ContigInterval)
private static final org.genomicsdb.model.Coordinates.ContigInterval DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.genomicsdb.model.Coordinates.ContigInterval();
}
public static org.genomicsdb.model.Coordinates.ContigInterval getDefaultInstance() {
return DEFAULT_INSTANCE;
}
@java.lang.Deprecated public static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public ContigInterval parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
Builder builder = newBuilder();
try {
builder.mergeFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(builder.buildPartial());
} catch (com.google.protobuf.UninitializedMessageException e) {
throw e.asInvalidProtocolBufferException().setUnfinishedMessage(builder.buildPartial());
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(e)
.setUnfinishedMessage(builder.buildPartial());
}
return builder.buildPartial();
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.ContigInterval getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
public interface GenomicsDBColumnIntervalOrBuilder extends
// @@protoc_insertion_point(interface_extends:GenomicsDBColumnInterval)
com.google.protobuf.MessageOrBuilder {
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
* @return Whether the tiledbColumnInterval field is set.
*/
boolean hasTiledbColumnInterval();
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
* @return The tiledbColumnInterval.
*/
org.genomicsdb.model.Coordinates.TileDBColumnInterval getTiledbColumnInterval();
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
org.genomicsdb.model.Coordinates.TileDBColumnIntervalOrBuilder getTiledbColumnIntervalOrBuilder();
/**
* .ContigInterval contig_interval = 2;
* @return Whether the contigInterval field is set.
*/
boolean hasContigInterval();
/**
* .ContigInterval contig_interval = 2;
* @return The contigInterval.
*/
org.genomicsdb.model.Coordinates.ContigInterval getContigInterval();
/**
* .ContigInterval contig_interval = 2;
*/
org.genomicsdb.model.Coordinates.ContigIntervalOrBuilder getContigIntervalOrBuilder();
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.IntervalCase getIntervalCase();
}
/**
* Protobuf type {@code GenomicsDBColumnInterval}
*/
public static final class GenomicsDBColumnInterval extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:GenomicsDBColumnInterval)
GenomicsDBColumnIntervalOrBuilder {
private static final long serialVersionUID = 0L;
// Use GenomicsDBColumnInterval.newBuilder() to construct.
private GenomicsDBColumnInterval(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private GenomicsDBColumnInterval() {
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new GenomicsDBColumnInterval();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnInterval_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnInterval_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.class, org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.Builder.class);
}
private int bitField0_;
private int intervalCase_ = 0;
private java.lang.Object interval_;
public enum IntervalCase
implements com.google.protobuf.Internal.EnumLite,
com.google.protobuf.AbstractMessage.InternalOneOfEnum {
TILEDB_COLUMN_INTERVAL(1),
CONTIG_INTERVAL(2),
INTERVAL_NOT_SET(0);
private final int value;
private IntervalCase(int value) {
this.value = value;
}
/**
* @param value The number of the enum to look for.
* @return The enum associated with the given number.
* @deprecated Use {@link #forNumber(int)} instead.
*/
@java.lang.Deprecated
public static IntervalCase valueOf(int value) {
return forNumber(value);
}
public static IntervalCase forNumber(int value) {
switch (value) {
case 1: return TILEDB_COLUMN_INTERVAL;
case 2: return CONTIG_INTERVAL;
case 0: return INTERVAL_NOT_SET;
default: return null;
}
}
public int getNumber() {
return this.value;
}
};
public IntervalCase
getIntervalCase() {
return IntervalCase.forNumber(
intervalCase_);
}
public static final int TILEDB_COLUMN_INTERVAL_FIELD_NUMBER = 1;
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
* @return Whether the tiledbColumnInterval field is set.
*/
@java.lang.Override
public boolean hasTiledbColumnInterval() {
return intervalCase_ == 1;
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
* @return The tiledbColumnInterval.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.TileDBColumnInterval getTiledbColumnInterval() {
if (intervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_;
}
return org.genomicsdb.model.Coordinates.TileDBColumnInterval.getDefaultInstance();
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.TileDBColumnIntervalOrBuilder getTiledbColumnIntervalOrBuilder() {
if (intervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_;
}
return org.genomicsdb.model.Coordinates.TileDBColumnInterval.getDefaultInstance();
}
public static final int CONTIG_INTERVAL_FIELD_NUMBER = 2;
/**
* .ContigInterval contig_interval = 2;
* @return Whether the contigInterval field is set.
*/
@java.lang.Override
public boolean hasContigInterval() {
return intervalCase_ == 2;
}
/**
* .ContigInterval contig_interval = 2;
* @return The contigInterval.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.ContigInterval getContigInterval() {
if (intervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.ContigInterval) interval_;
}
return org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance();
}
/**
* .ContigInterval contig_interval = 2;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.ContigIntervalOrBuilder getContigIntervalOrBuilder() {
if (intervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.ContigInterval) interval_;
}
return org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance();
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
if (hasTiledbColumnInterval()) {
if (!getTiledbColumnInterval().isInitialized()) {
memoizedIsInitialized = 0;
return false;
}
}
if (hasContigInterval()) {
if (!getContigInterval().isInitialized()) {
memoizedIsInitialized = 0;
return false;
}
}
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (intervalCase_ == 1) {
output.writeMessage(1, (org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_);
}
if (intervalCase_ == 2) {
output.writeMessage(2, (org.genomicsdb.model.Coordinates.ContigInterval) interval_);
}
getUnknownFields().writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (intervalCase_ == 1) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(1, (org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_);
}
if (intervalCase_ == 2) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(2, (org.genomicsdb.model.Coordinates.ContigInterval) interval_);
}
size += getUnknownFields().getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval)) {
return super.equals(obj);
}
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval other = (org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) obj;
if (!getIntervalCase().equals(other.getIntervalCase())) return false;
switch (intervalCase_) {
case 1:
if (!getTiledbColumnInterval()
.equals(other.getTiledbColumnInterval())) return false;
break;
case 2:
if (!getContigInterval()
.equals(other.getContigInterval())) return false;
break;
case 0:
default:
}
if (!getUnknownFields().equals(other.getUnknownFields())) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
switch (intervalCase_) {
case 1:
hash = (37 * hash) + TILEDB_COLUMN_INTERVAL_FIELD_NUMBER;
hash = (53 * hash) + getTiledbColumnInterval().hashCode();
break;
case 2:
hash = (37 * hash) + CONTIG_INTERVAL_FIELD_NUMBER;
hash = (53 * hash) + getContigInterval().hashCode();
break;
case 0:
default:
}
hash = (29 * hash) + getUnknownFields().hashCode();
memoizedHashCode = hash;
return hash;
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
* Protobuf type {@code GenomicsDBColumnInterval}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:GenomicsDBColumnInterval)
org.genomicsdb.model.Coordinates.GenomicsDBColumnIntervalOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnInterval_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnInterval_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.class, org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.Builder.class);
}
// Construct using org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.newBuilder()
private Builder() {
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
}
@java.lang.Override
public Builder clear() {
super.clear();
if (tiledbColumnIntervalBuilder_ != null) {
tiledbColumnIntervalBuilder_.clear();
}
if (contigIntervalBuilder_ != null) {
contigIntervalBuilder_.clear();
}
intervalCase_ = 0;
interval_ = null;
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnInterval_descriptor;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval getDefaultInstanceForType() {
return org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance();
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval build() {
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval buildPartial() {
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval result = new org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval(this);
int from_bitField0_ = bitField0_;
int to_bitField0_ = 0;
if (intervalCase_ == 1) {
if (tiledbColumnIntervalBuilder_ == null) {
result.interval_ = interval_;
} else {
result.interval_ = tiledbColumnIntervalBuilder_.build();
}
}
if (intervalCase_ == 2) {
if (contigIntervalBuilder_ == null) {
result.interval_ = interval_;
} else {
result.interval_ = contigIntervalBuilder_.build();
}
}
result.bitField0_ = to_bitField0_;
result.intervalCase_ = intervalCase_;
onBuilt();
return result;
}
@java.lang.Override
public Builder clone() {
return super.clone();
}
@java.lang.Override
public Builder setField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.setField(field, value);
}
@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
}
@java.lang.Override
public Builder clearOneof(
com.google.protobuf.Descriptors.OneofDescriptor oneof) {
return super.clearOneof(oneof);
}
@java.lang.Override
public Builder setRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
return super.setRepeatedField(field, index, value);
}
@java.lang.Override
public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.addRepeatedField(field, value);
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) {
return mergeFrom((org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval other) {
if (other == org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance()) return this;
switch (other.getIntervalCase()) {
case TILEDB_COLUMN_INTERVAL: {
mergeTiledbColumnInterval(other.getTiledbColumnInterval());
break;
}
case CONTIG_INTERVAL: {
mergeContigInterval(other.getContigInterval());
break;
}
case INTERVAL_NOT_SET: {
break;
}
}
this.mergeUnknownFields(other.getUnknownFields());
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
if (hasTiledbColumnInterval()) {
if (!getTiledbColumnInterval().isInitialized()) {
return false;
}
}
if (hasContigInterval()) {
if (!getContigInterval().isInitialized()) {
return false;
}
}
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 10: {
input.readMessage(
getTiledbColumnIntervalFieldBuilder().getBuilder(),
extensionRegistry);
intervalCase_ = 1;
break;
} // case 10
case 18: {
input.readMessage(
getContigIntervalFieldBuilder().getBuilder(),
extensionRegistry);
intervalCase_ = 2;
break;
} // case 18
default: {
if (!super.parseUnknownField(input, extensionRegistry, tag)) {
done = true; // was an endgroup tag
}
break;
} // default:
} // switch (tag)
} // while (!done)
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.unwrapIOException();
} finally {
onChanged();
} // finally
return this;
}
private int intervalCase_ = 0;
private java.lang.Object interval_;
public IntervalCase
getIntervalCase() {
return IntervalCase.forNumber(
intervalCase_);
}
public Builder clearInterval() {
intervalCase_ = 0;
interval_ = null;
onChanged();
return this;
}
private int bitField0_;
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.TileDBColumnInterval, org.genomicsdb.model.Coordinates.TileDBColumnInterval.Builder, org.genomicsdb.model.Coordinates.TileDBColumnIntervalOrBuilder> tiledbColumnIntervalBuilder_;
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
* @return Whether the tiledbColumnInterval field is set.
*/
@java.lang.Override
public boolean hasTiledbColumnInterval() {
return intervalCase_ == 1;
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
* @return The tiledbColumnInterval.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.TileDBColumnInterval getTiledbColumnInterval() {
if (tiledbColumnIntervalBuilder_ == null) {
if (intervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_;
}
return org.genomicsdb.model.Coordinates.TileDBColumnInterval.getDefaultInstance();
} else {
if (intervalCase_ == 1) {
return tiledbColumnIntervalBuilder_.getMessage();
}
return org.genomicsdb.model.Coordinates.TileDBColumnInterval.getDefaultInstance();
}
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
public Builder setTiledbColumnInterval(org.genomicsdb.model.Coordinates.TileDBColumnInterval value) {
if (tiledbColumnIntervalBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
interval_ = value;
onChanged();
} else {
tiledbColumnIntervalBuilder_.setMessage(value);
}
intervalCase_ = 1;
return this;
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
public Builder setTiledbColumnInterval(
org.genomicsdb.model.Coordinates.TileDBColumnInterval.Builder builderForValue) {
if (tiledbColumnIntervalBuilder_ == null) {
interval_ = builderForValue.build();
onChanged();
} else {
tiledbColumnIntervalBuilder_.setMessage(builderForValue.build());
}
intervalCase_ = 1;
return this;
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
public Builder mergeTiledbColumnInterval(org.genomicsdb.model.Coordinates.TileDBColumnInterval value) {
if (tiledbColumnIntervalBuilder_ == null) {
if (intervalCase_ == 1 &&
interval_ != org.genomicsdb.model.Coordinates.TileDBColumnInterval.getDefaultInstance()) {
interval_ = org.genomicsdb.model.Coordinates.TileDBColumnInterval.newBuilder((org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_)
.mergeFrom(value).buildPartial();
} else {
interval_ = value;
}
onChanged();
} else {
if (intervalCase_ == 1) {
tiledbColumnIntervalBuilder_.mergeFrom(value);
} else {
tiledbColumnIntervalBuilder_.setMessage(value);
}
}
intervalCase_ = 1;
return this;
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
public Builder clearTiledbColumnInterval() {
if (tiledbColumnIntervalBuilder_ == null) {
if (intervalCase_ == 1) {
intervalCase_ = 0;
interval_ = null;
onChanged();
}
} else {
if (intervalCase_ == 1) {
intervalCase_ = 0;
interval_ = null;
}
tiledbColumnIntervalBuilder_.clear();
}
return this;
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
public org.genomicsdb.model.Coordinates.TileDBColumnInterval.Builder getTiledbColumnIntervalBuilder() {
return getTiledbColumnIntervalFieldBuilder().getBuilder();
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.TileDBColumnIntervalOrBuilder getTiledbColumnIntervalOrBuilder() {
if ((intervalCase_ == 1) && (tiledbColumnIntervalBuilder_ != null)) {
return tiledbColumnIntervalBuilder_.getMessageOrBuilder();
} else {
if (intervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_;
}
return org.genomicsdb.model.Coordinates.TileDBColumnInterval.getDefaultInstance();
}
}
/**
* .TileDBColumnInterval tiledb_column_interval = 1;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.TileDBColumnInterval, org.genomicsdb.model.Coordinates.TileDBColumnInterval.Builder, org.genomicsdb.model.Coordinates.TileDBColumnIntervalOrBuilder>
getTiledbColumnIntervalFieldBuilder() {
if (tiledbColumnIntervalBuilder_ == null) {
if (!(intervalCase_ == 1)) {
interval_ = org.genomicsdb.model.Coordinates.TileDBColumnInterval.getDefaultInstance();
}
tiledbColumnIntervalBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.TileDBColumnInterval, org.genomicsdb.model.Coordinates.TileDBColumnInterval.Builder, org.genomicsdb.model.Coordinates.TileDBColumnIntervalOrBuilder>(
(org.genomicsdb.model.Coordinates.TileDBColumnInterval) interval_,
getParentForChildren(),
isClean());
interval_ = null;
}
intervalCase_ = 1;
onChanged();;
return tiledbColumnIntervalBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.ContigInterval, org.genomicsdb.model.Coordinates.ContigInterval.Builder, org.genomicsdb.model.Coordinates.ContigIntervalOrBuilder> contigIntervalBuilder_;
/**
* .ContigInterval contig_interval = 2;
* @return Whether the contigInterval field is set.
*/
@java.lang.Override
public boolean hasContigInterval() {
return intervalCase_ == 2;
}
/**
* .ContigInterval contig_interval = 2;
* @return The contigInterval.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.ContigInterval getContigInterval() {
if (contigIntervalBuilder_ == null) {
if (intervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.ContigInterval) interval_;
}
return org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance();
} else {
if (intervalCase_ == 2) {
return contigIntervalBuilder_.getMessage();
}
return org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance();
}
}
/**
* .ContigInterval contig_interval = 2;
*/
public Builder setContigInterval(org.genomicsdb.model.Coordinates.ContigInterval value) {
if (contigIntervalBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
interval_ = value;
onChanged();
} else {
contigIntervalBuilder_.setMessage(value);
}
intervalCase_ = 2;
return this;
}
/**
* .ContigInterval contig_interval = 2;
*/
public Builder setContigInterval(
org.genomicsdb.model.Coordinates.ContigInterval.Builder builderForValue) {
if (contigIntervalBuilder_ == null) {
interval_ = builderForValue.build();
onChanged();
} else {
contigIntervalBuilder_.setMessage(builderForValue.build());
}
intervalCase_ = 2;
return this;
}
/**
* .ContigInterval contig_interval = 2;
*/
public Builder mergeContigInterval(org.genomicsdb.model.Coordinates.ContigInterval value) {
if (contigIntervalBuilder_ == null) {
if (intervalCase_ == 2 &&
interval_ != org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance()) {
interval_ = org.genomicsdb.model.Coordinates.ContigInterval.newBuilder((org.genomicsdb.model.Coordinates.ContigInterval) interval_)
.mergeFrom(value).buildPartial();
} else {
interval_ = value;
}
onChanged();
} else {
if (intervalCase_ == 2) {
contigIntervalBuilder_.mergeFrom(value);
} else {
contigIntervalBuilder_.setMessage(value);
}
}
intervalCase_ = 2;
return this;
}
/**
* .ContigInterval contig_interval = 2;
*/
public Builder clearContigInterval() {
if (contigIntervalBuilder_ == null) {
if (intervalCase_ == 2) {
intervalCase_ = 0;
interval_ = null;
onChanged();
}
} else {
if (intervalCase_ == 2) {
intervalCase_ = 0;
interval_ = null;
}
contigIntervalBuilder_.clear();
}
return this;
}
/**
* .ContigInterval contig_interval = 2;
*/
public org.genomicsdb.model.Coordinates.ContigInterval.Builder getContigIntervalBuilder() {
return getContigIntervalFieldBuilder().getBuilder();
}
/**
* .ContigInterval contig_interval = 2;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.ContigIntervalOrBuilder getContigIntervalOrBuilder() {
if ((intervalCase_ == 2) && (contigIntervalBuilder_ != null)) {
return contigIntervalBuilder_.getMessageOrBuilder();
} else {
if (intervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.ContigInterval) interval_;
}
return org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance();
}
}
/**
* .ContigInterval contig_interval = 2;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.ContigInterval, org.genomicsdb.model.Coordinates.ContigInterval.Builder, org.genomicsdb.model.Coordinates.ContigIntervalOrBuilder>
getContigIntervalFieldBuilder() {
if (contigIntervalBuilder_ == null) {
if (!(intervalCase_ == 2)) {
interval_ = org.genomicsdb.model.Coordinates.ContigInterval.getDefaultInstance();
}
contigIntervalBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.ContigInterval, org.genomicsdb.model.Coordinates.ContigInterval.Builder, org.genomicsdb.model.Coordinates.ContigIntervalOrBuilder>(
(org.genomicsdb.model.Coordinates.ContigInterval) interval_,
getParentForChildren(),
isClean());
interval_ = null;
}
intervalCase_ = 2;
onChanged();;
return contigIntervalBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:GenomicsDBColumnInterval)
}
// @@protoc_insertion_point(class_scope:GenomicsDBColumnInterval)
private static final org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval();
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval getDefaultInstance() {
return DEFAULT_INSTANCE;
}
@java.lang.Deprecated public static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public GenomicsDBColumnInterval parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
Builder builder = newBuilder();
try {
builder.mergeFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(builder.buildPartial());
} catch (com.google.protobuf.UninitializedMessageException e) {
throw e.asInvalidProtocolBufferException().setUnfinishedMessage(builder.buildPartial());
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(e)
.setUnfinishedMessage(builder.buildPartial());
}
return builder.buildPartial();
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
public interface GenomicsDBColumnOrIntervalOrBuilder extends
// @@protoc_insertion_point(interface_extends:GenomicsDBColumnOrInterval)
com.google.protobuf.MessageOrBuilder {
/**
* .GenomicsDBColumn column = 1;
* @return Whether the column field is set.
*/
boolean hasColumn();
/**
* .GenomicsDBColumn column = 1;
* @return The column.
*/
org.genomicsdb.model.Coordinates.GenomicsDBColumn getColumn();
/**
* .GenomicsDBColumn column = 1;
*/
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrBuilder getColumnOrBuilder();
/**
* .GenomicsDBColumnInterval column_interval = 2;
* @return Whether the columnInterval field is set.
*/
boolean hasColumnInterval();
/**
* .GenomicsDBColumnInterval column_interval = 2;
* @return The columnInterval.
*/
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval getColumnInterval();
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
org.genomicsdb.model.Coordinates.GenomicsDBColumnIntervalOrBuilder getColumnIntervalOrBuilder();
public org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.ColumnOrIntervalCase getColumnOrIntervalCase();
}
/**
* Protobuf type {@code GenomicsDBColumnOrInterval}
*/
public static final class GenomicsDBColumnOrInterval extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:GenomicsDBColumnOrInterval)
GenomicsDBColumnOrIntervalOrBuilder {
private static final long serialVersionUID = 0L;
// Use GenomicsDBColumnOrInterval.newBuilder() to construct.
private GenomicsDBColumnOrInterval(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private GenomicsDBColumnOrInterval() {
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new GenomicsDBColumnOrInterval();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnOrInterval_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnOrInterval_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.class, org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.Builder.class);
}
private int bitField0_;
private int columnOrIntervalCase_ = 0;
private java.lang.Object columnOrInterval_;
public enum ColumnOrIntervalCase
implements com.google.protobuf.Internal.EnumLite,
com.google.protobuf.AbstractMessage.InternalOneOfEnum {
COLUMN(1),
COLUMN_INTERVAL(2),
COLUMNORINTERVAL_NOT_SET(0);
private final int value;
private ColumnOrIntervalCase(int value) {
this.value = value;
}
/**
* @param value The number of the enum to look for.
* @return The enum associated with the given number.
* @deprecated Use {@link #forNumber(int)} instead.
*/
@java.lang.Deprecated
public static ColumnOrIntervalCase valueOf(int value) {
return forNumber(value);
}
public static ColumnOrIntervalCase forNumber(int value) {
switch (value) {
case 1: return COLUMN;
case 2: return COLUMN_INTERVAL;
case 0: return COLUMNORINTERVAL_NOT_SET;
default: return null;
}
}
public int getNumber() {
return this.value;
}
};
public ColumnOrIntervalCase
getColumnOrIntervalCase() {
return ColumnOrIntervalCase.forNumber(
columnOrIntervalCase_);
}
public static final int COLUMN_FIELD_NUMBER = 1;
/**
* .GenomicsDBColumn column = 1;
* @return Whether the column field is set.
*/
@java.lang.Override
public boolean hasColumn() {
return columnOrIntervalCase_ == 1;
}
/**
* .GenomicsDBColumn column = 1;
* @return The column.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumn getColumn() {
if (columnOrIntervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance();
}
/**
* .GenomicsDBColumn column = 1;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnOrBuilder getColumnOrBuilder() {
if (columnOrIntervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance();
}
public static final int COLUMN_INTERVAL_FIELD_NUMBER = 2;
/**
* .GenomicsDBColumnInterval column_interval = 2;
* @return Whether the columnInterval field is set.
*/
@java.lang.Override
public boolean hasColumnInterval() {
return columnOrIntervalCase_ == 2;
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
* @return The columnInterval.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval getColumnInterval() {
if (columnOrIntervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance();
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnIntervalOrBuilder getColumnIntervalOrBuilder() {
if (columnOrIntervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance();
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
if (hasColumn()) {
if (!getColumn().isInitialized()) {
memoizedIsInitialized = 0;
return false;
}
}
if (hasColumnInterval()) {
if (!getColumnInterval().isInitialized()) {
memoizedIsInitialized = 0;
return false;
}
}
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (columnOrIntervalCase_ == 1) {
output.writeMessage(1, (org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_);
}
if (columnOrIntervalCase_ == 2) {
output.writeMessage(2, (org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_);
}
getUnknownFields().writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (columnOrIntervalCase_ == 1) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(1, (org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_);
}
if (columnOrIntervalCase_ == 2) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(2, (org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_);
}
size += getUnknownFields().getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval)) {
return super.equals(obj);
}
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval other = (org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval) obj;
if (!getColumnOrIntervalCase().equals(other.getColumnOrIntervalCase())) return false;
switch (columnOrIntervalCase_) {
case 1:
if (!getColumn()
.equals(other.getColumn())) return false;
break;
case 2:
if (!getColumnInterval()
.equals(other.getColumnInterval())) return false;
break;
case 0:
default:
}
if (!getUnknownFields().equals(other.getUnknownFields())) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
switch (columnOrIntervalCase_) {
case 1:
hash = (37 * hash) + COLUMN_FIELD_NUMBER;
hash = (53 * hash) + getColumn().hashCode();
break;
case 2:
hash = (37 * hash) + COLUMN_INTERVAL_FIELD_NUMBER;
hash = (53 * hash) + getColumnInterval().hashCode();
break;
case 0:
default:
}
hash = (29 * hash) + getUnknownFields().hashCode();
memoizedHashCode = hash;
return hash;
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
* Protobuf type {@code GenomicsDBColumnOrInterval}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:GenomicsDBColumnOrInterval)
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrIntervalOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnOrInterval_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnOrInterval_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.class, org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.Builder.class);
}
// Construct using org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.newBuilder()
private Builder() {
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
}
@java.lang.Override
public Builder clear() {
super.clear();
if (columnBuilder_ != null) {
columnBuilder_.clear();
}
if (columnIntervalBuilder_ != null) {
columnIntervalBuilder_.clear();
}
columnOrIntervalCase_ = 0;
columnOrInterval_ = null;
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return org.genomicsdb.model.Coordinates.internal_static_GenomicsDBColumnOrInterval_descriptor;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval getDefaultInstanceForType() {
return org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.getDefaultInstance();
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval build() {
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval buildPartial() {
org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval result = new org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval(this);
int from_bitField0_ = bitField0_;
int to_bitField0_ = 0;
if (columnOrIntervalCase_ == 1) {
if (columnBuilder_ == null) {
result.columnOrInterval_ = columnOrInterval_;
} else {
result.columnOrInterval_ = columnBuilder_.build();
}
}
if (columnOrIntervalCase_ == 2) {
if (columnIntervalBuilder_ == null) {
result.columnOrInterval_ = columnOrInterval_;
} else {
result.columnOrInterval_ = columnIntervalBuilder_.build();
}
}
result.bitField0_ = to_bitField0_;
result.columnOrIntervalCase_ = columnOrIntervalCase_;
onBuilt();
return result;
}
@java.lang.Override
public Builder clone() {
return super.clone();
}
@java.lang.Override
public Builder setField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.setField(field, value);
}
@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
}
@java.lang.Override
public Builder clearOneof(
com.google.protobuf.Descriptors.OneofDescriptor oneof) {
return super.clearOneof(oneof);
}
@java.lang.Override
public Builder setRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
return super.setRepeatedField(field, index, value);
}
@java.lang.Override
public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.addRepeatedField(field, value);
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval) {
return mergeFrom((org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval other) {
if (other == org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval.getDefaultInstance()) return this;
switch (other.getColumnOrIntervalCase()) {
case COLUMN: {
mergeColumn(other.getColumn());
break;
}
case COLUMN_INTERVAL: {
mergeColumnInterval(other.getColumnInterval());
break;
}
case COLUMNORINTERVAL_NOT_SET: {
break;
}
}
this.mergeUnknownFields(other.getUnknownFields());
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
if (hasColumn()) {
if (!getColumn().isInitialized()) {
return false;
}
}
if (hasColumnInterval()) {
if (!getColumnInterval().isInitialized()) {
return false;
}
}
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 10: {
input.readMessage(
getColumnFieldBuilder().getBuilder(),
extensionRegistry);
columnOrIntervalCase_ = 1;
break;
} // case 10
case 18: {
input.readMessage(
getColumnIntervalFieldBuilder().getBuilder(),
extensionRegistry);
columnOrIntervalCase_ = 2;
break;
} // case 18
default: {
if (!super.parseUnknownField(input, extensionRegistry, tag)) {
done = true; // was an endgroup tag
}
break;
} // default:
} // switch (tag)
} // while (!done)
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.unwrapIOException();
} finally {
onChanged();
} // finally
return this;
}
private int columnOrIntervalCase_ = 0;
private java.lang.Object columnOrInterval_;
public ColumnOrIntervalCase
getColumnOrIntervalCase() {
return ColumnOrIntervalCase.forNumber(
columnOrIntervalCase_);
}
public Builder clearColumnOrInterval() {
columnOrIntervalCase_ = 0;
columnOrInterval_ = null;
onChanged();
return this;
}
private int bitField0_;
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.GenomicsDBColumn, org.genomicsdb.model.Coordinates.GenomicsDBColumn.Builder, org.genomicsdb.model.Coordinates.GenomicsDBColumnOrBuilder> columnBuilder_;
/**
* .GenomicsDBColumn column = 1;
* @return Whether the column field is set.
*/
@java.lang.Override
public boolean hasColumn() {
return columnOrIntervalCase_ == 1;
}
/**
* .GenomicsDBColumn column = 1;
* @return The column.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumn getColumn() {
if (columnBuilder_ == null) {
if (columnOrIntervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance();
} else {
if (columnOrIntervalCase_ == 1) {
return columnBuilder_.getMessage();
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance();
}
}
/**
* .GenomicsDBColumn column = 1;
*/
public Builder setColumn(org.genomicsdb.model.Coordinates.GenomicsDBColumn value) {
if (columnBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
columnOrInterval_ = value;
onChanged();
} else {
columnBuilder_.setMessage(value);
}
columnOrIntervalCase_ = 1;
return this;
}
/**
* .GenomicsDBColumn column = 1;
*/
public Builder setColumn(
org.genomicsdb.model.Coordinates.GenomicsDBColumn.Builder builderForValue) {
if (columnBuilder_ == null) {
columnOrInterval_ = builderForValue.build();
onChanged();
} else {
columnBuilder_.setMessage(builderForValue.build());
}
columnOrIntervalCase_ = 1;
return this;
}
/**
* .GenomicsDBColumn column = 1;
*/
public Builder mergeColumn(org.genomicsdb.model.Coordinates.GenomicsDBColumn value) {
if (columnBuilder_ == null) {
if (columnOrIntervalCase_ == 1 &&
columnOrInterval_ != org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance()) {
columnOrInterval_ = org.genomicsdb.model.Coordinates.GenomicsDBColumn.newBuilder((org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_)
.mergeFrom(value).buildPartial();
} else {
columnOrInterval_ = value;
}
onChanged();
} else {
if (columnOrIntervalCase_ == 1) {
columnBuilder_.mergeFrom(value);
} else {
columnBuilder_.setMessage(value);
}
}
columnOrIntervalCase_ = 1;
return this;
}
/**
* .GenomicsDBColumn column = 1;
*/
public Builder clearColumn() {
if (columnBuilder_ == null) {
if (columnOrIntervalCase_ == 1) {
columnOrIntervalCase_ = 0;
columnOrInterval_ = null;
onChanged();
}
} else {
if (columnOrIntervalCase_ == 1) {
columnOrIntervalCase_ = 0;
columnOrInterval_ = null;
}
columnBuilder_.clear();
}
return this;
}
/**
* .GenomicsDBColumn column = 1;
*/
public org.genomicsdb.model.Coordinates.GenomicsDBColumn.Builder getColumnBuilder() {
return getColumnFieldBuilder().getBuilder();
}
/**
* .GenomicsDBColumn column = 1;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnOrBuilder getColumnOrBuilder() {
if ((columnOrIntervalCase_ == 1) && (columnBuilder_ != null)) {
return columnBuilder_.getMessageOrBuilder();
} else {
if (columnOrIntervalCase_ == 1) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance();
}
}
/**
* .GenomicsDBColumn column = 1;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.GenomicsDBColumn, org.genomicsdb.model.Coordinates.GenomicsDBColumn.Builder, org.genomicsdb.model.Coordinates.GenomicsDBColumnOrBuilder>
getColumnFieldBuilder() {
if (columnBuilder_ == null) {
if (!(columnOrIntervalCase_ == 1)) {
columnOrInterval_ = org.genomicsdb.model.Coordinates.GenomicsDBColumn.getDefaultInstance();
}
columnBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.GenomicsDBColumn, org.genomicsdb.model.Coordinates.GenomicsDBColumn.Builder, org.genomicsdb.model.Coordinates.GenomicsDBColumnOrBuilder>(
(org.genomicsdb.model.Coordinates.GenomicsDBColumn) columnOrInterval_,
getParentForChildren(),
isClean());
columnOrInterval_ = null;
}
columnOrIntervalCase_ = 1;
onChanged();;
return columnBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval, org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.Builder, org.genomicsdb.model.Coordinates.GenomicsDBColumnIntervalOrBuilder> columnIntervalBuilder_;
/**
* .GenomicsDBColumnInterval column_interval = 2;
* @return Whether the columnInterval field is set.
*/
@java.lang.Override
public boolean hasColumnInterval() {
return columnOrIntervalCase_ == 2;
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
* @return The columnInterval.
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval getColumnInterval() {
if (columnIntervalBuilder_ == null) {
if (columnOrIntervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance();
} else {
if (columnOrIntervalCase_ == 2) {
return columnIntervalBuilder_.getMessage();
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance();
}
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
public Builder setColumnInterval(org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval value) {
if (columnIntervalBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
columnOrInterval_ = value;
onChanged();
} else {
columnIntervalBuilder_.setMessage(value);
}
columnOrIntervalCase_ = 2;
return this;
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
public Builder setColumnInterval(
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.Builder builderForValue) {
if (columnIntervalBuilder_ == null) {
columnOrInterval_ = builderForValue.build();
onChanged();
} else {
columnIntervalBuilder_.setMessage(builderForValue.build());
}
columnOrIntervalCase_ = 2;
return this;
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
public Builder mergeColumnInterval(org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval value) {
if (columnIntervalBuilder_ == null) {
if (columnOrIntervalCase_ == 2 &&
columnOrInterval_ != org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance()) {
columnOrInterval_ = org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.newBuilder((org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_)
.mergeFrom(value).buildPartial();
} else {
columnOrInterval_ = value;
}
onChanged();
} else {
if (columnOrIntervalCase_ == 2) {
columnIntervalBuilder_.mergeFrom(value);
} else {
columnIntervalBuilder_.setMessage(value);
}
}
columnOrIntervalCase_ = 2;
return this;
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
public Builder clearColumnInterval() {
if (columnIntervalBuilder_ == null) {
if (columnOrIntervalCase_ == 2) {
columnOrIntervalCase_ = 0;
columnOrInterval_ = null;
onChanged();
}
} else {
if (columnOrIntervalCase_ == 2) {
columnOrIntervalCase_ = 0;
columnOrInterval_ = null;
}
columnIntervalBuilder_.clear();
}
return this;
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
public org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.Builder getColumnIntervalBuilder() {
return getColumnIntervalFieldBuilder().getBuilder();
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnIntervalOrBuilder getColumnIntervalOrBuilder() {
if ((columnOrIntervalCase_ == 2) && (columnIntervalBuilder_ != null)) {
return columnIntervalBuilder_.getMessageOrBuilder();
} else {
if (columnOrIntervalCase_ == 2) {
return (org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_;
}
return org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance();
}
}
/**
* .GenomicsDBColumnInterval column_interval = 2;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval, org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.Builder, org.genomicsdb.model.Coordinates.GenomicsDBColumnIntervalOrBuilder>
getColumnIntervalFieldBuilder() {
if (columnIntervalBuilder_ == null) {
if (!(columnOrIntervalCase_ == 2)) {
columnOrInterval_ = org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.getDefaultInstance();
}
columnIntervalBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval, org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval.Builder, org.genomicsdb.model.Coordinates.GenomicsDBColumnIntervalOrBuilder>(
(org.genomicsdb.model.Coordinates.GenomicsDBColumnInterval) columnOrInterval_,
getParentForChildren(),
isClean());
columnOrInterval_ = null;
}
columnOrIntervalCase_ = 2;
onChanged();;
return columnIntervalBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:GenomicsDBColumnOrInterval)
}
// @@protoc_insertion_point(class_scope:GenomicsDBColumnOrInterval)
private static final org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval();
}
public static org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval getDefaultInstance() {
return DEFAULT_INSTANCE;
}
@java.lang.Deprecated public static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public GenomicsDBColumnOrInterval parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
Builder builder = newBuilder();
try {
builder.mergeFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(builder.buildPartial());
} catch (com.google.protobuf.UninitializedMessageException e) {
throw e.asInvalidProtocolBufferException().setUnfinishedMessage(builder.buildPartial());
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(e)
.setUnfinishedMessage(builder.buildPartial());
}
return builder.buildPartial();
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
private static final com.google.protobuf.Descriptors.Descriptor
internal_static_ContigPosition_descriptor;
private static final
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
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private static final com.google.protobuf.Descriptors.Descriptor
internal_static_GenomicsDBColumn_descriptor;
private static final
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private static final com.google.protobuf.Descriptors.Descriptor
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private static final
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private static final com.google.protobuf.Descriptors.Descriptor
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private static final
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getDescriptor() {
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}
private static com.google.protobuf.Descriptors.FileDescriptor
descriptor;
static {
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"Position\022\016\n\006contig\030\001 \002(\t\022\020\n\010position\030\002 \002" +
"(\003\"a\n\020GenomicsDBColumn\022\027\n\rtiledb_column\030" +
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"gPositionH\000B\010\n\006column\"2\n\024TileDBColumnInt" +
"erval\022\r\n\005begin\030\001 \002(\003\022\013\n\003end\030\002 \002(\003\"<\n\016Con" +
"tigInterval\022\016\n\006contig\030\001 \002(\t\022\r\n\005begin\030\002 \001" +
"(\003\022\013\n\003end\030\003 \001(\003\"\213\001\n\030GenomicsDBColumnInte" +
"rval\0227\n\026tiledb_column_interval\030\001 \001(\0132\025.T" +
"ileDBColumnIntervalH\000\022*\n\017contig_interval" +
"\030\002 \001(\0132\017.ContigIntervalH\000B\n\n\010interval\"\215\001" +
"\n\032GenomicsDBColumnOrInterval\022#\n\006column\030\001" +
" \001(\0132\021.GenomicsDBColumnH\000\0224\n\017column_inte" +
"rval\030\002 \001(\0132\031.GenomicsDBColumnIntervalH\000B" +
"\024\n\022column_or_intervalB.\n\024org.genomicsdb." +
"modelB\013CoordinatesZ\tprotobuf/"
};
descriptor = com.google.protobuf.Descriptors.FileDescriptor
.internalBuildGeneratedFileFrom(descriptorData,
new com.google.protobuf.Descriptors.FileDescriptor[] {
});
internal_static_ContigPosition_descriptor =
getDescriptor().getMessageTypes().get(0);
internal_static_ContigPosition_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_ContigPosition_descriptor,
new java.lang.String[] { "Contig", "Position", });
internal_static_GenomicsDBColumn_descriptor =
getDescriptor().getMessageTypes().get(1);
internal_static_GenomicsDBColumn_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_GenomicsDBColumn_descriptor,
new java.lang.String[] { "TiledbColumn", "ContigPosition", "Column", });
internal_static_TileDBColumnInterval_descriptor =
getDescriptor().getMessageTypes().get(2);
internal_static_TileDBColumnInterval_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_TileDBColumnInterval_descriptor,
new java.lang.String[] { "Begin", "End", });
internal_static_ContigInterval_descriptor =
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internal_static_ContigInterval_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_ContigInterval_descriptor,
new java.lang.String[] { "Contig", "Begin", "End", });
internal_static_GenomicsDBColumnInterval_descriptor =
getDescriptor().getMessageTypes().get(4);
internal_static_GenomicsDBColumnInterval_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_GenomicsDBColumnInterval_descriptor,
new java.lang.String[] { "TiledbColumnInterval", "ContigInterval", "Interval", });
internal_static_GenomicsDBColumnOrInterval_descriptor =
getDescriptor().getMessageTypes().get(5);
internal_static_GenomicsDBColumnOrInterval_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_GenomicsDBColumnOrInterval_descriptor,
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// @@protoc_insertion_point(outer_class_scope)
}
