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• readsets_2.10
• 1.0.3
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• Registrar.scala

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org.hammerlab.genomics.readsets.Registrar.scala Maven / Gradle / Ivy

package org.hammerlab.genomics.readsets

import com.esotericsoftware.kryo.Kryo
import org.apache.spark.serializer.KryoRegistrator
import org.hammerlab.genomics.{ loci, reads, reference }

class Registrar extends KryoRegistrator {
  override def registerClasses(kryo: Kryo): Unit = {
    // In Scala 2.10.x, ContigName and Locus are boxed and need to be kryo-registered.
    new reference.Registrar().registerClasses(kryo)

    new reads.Registrar().registerClasses(kryo)

    new loci.set.Registrar().registerClasses(kryo)

    kryo.register(classOf[SampleRead])
    kryo.register(classOf[Array[SampleRead]])
  }
}