• Home
• org.hammerlab.genomics
• readsets_2.10
• 1.0.3
• source code
• SingleSampleArgs.scala

×

Project download

Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance.
Project price only 1 $

You can buy this project and download/modify it how often you want.

org.hammerlab.genomics.readsets.args.SingleSampleArgs.scala Maven / Gradle / Ivy

package org.hammerlab.genomics.readsets.args

import org.hammerlab.genomics.readsets.io.ReadFilterArgs
import org.kohsuke.args4j.{Option => Args4jOption}

/** Argument for accepting a single set of reads (for non-somatic variant calling). */
trait SingleSampleArgs extends Base with ReadFilterArgs {
  @Args4jOption(name = "--reads", metaVar = "X", required = true, usage = "Aligned reads")
  var reads: String = ""

  override def paths = Array(reads)

  def sampleName = "reads"

  override def sampleNames = Array(sampleName)
}