org.intermine.model.bio.Gene Maven / Gradle / Ivy

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InterMine bio sources modules
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package org.intermine.model.bio;

public interface Gene extends org.intermine.model.bio.SequenceFeature
{
    public java.lang.String getBriefDescription();
    public void setBriefDescription(final java.lang.String briefDescription);

    public java.lang.String getDescription();
    public void setDescription(final java.lang.String description);

    public org.intermine.model.bio.IntergenicRegion getUpstreamIntergenicRegion();
    public void setUpstreamIntergenicRegion(final org.intermine.model.bio.IntergenicRegion upstreamIntergenicRegion);
    public void proxyUpstreamIntergenicRegion(final org.intermine.objectstore.proxy.ProxyReference upstreamIntergenicRegion);
    public org.intermine.model.InterMineObject proxGetUpstreamIntergenicRegion();

    public org.intermine.model.bio.IntergenicRegion getDownstreamIntergenicRegion();
    public void setDownstreamIntergenicRegion(final org.intermine.model.bio.IntergenicRegion downstreamIntergenicRegion);
    public void proxyDownstreamIntergenicRegion(final org.intermine.objectstore.proxy.ProxyReference downstreamIntergenicRegion);
    public org.intermine.model.InterMineObject proxGetDownstreamIntergenicRegion();

    public java.util.Set getFlankingRegions();
    public void setFlankingRegions(final java.util.Set flankingRegions);
    public void addFlankingRegions(final org.intermine.model.bio.GeneFlankingRegion arg);

    public java.util.Set getIntrons();
    public void setIntrons(final java.util.Set introns);
    public void addIntrons(final org.intermine.model.bio.Intron arg);

    public java.util.Set getProteins();
    public void setProteins(final java.util.Set proteins);
    public void addProteins(final org.intermine.model.bio.Protein arg);

    public java.util.Set getcDSs();
    public void setcDSs(final java.util.Set CDSs);
    public void addcDSs(final org.intermine.model.bio.CDS arg);

    public java.util.Set getExons();
    public void setExons(final java.util.Set exons);
    public void addExons(final org.intermine.model.bio.Exon arg);

    public java.util.Set getPathways();
    public void setPathways(final java.util.Set pathways);
    public void addPathways(final org.intermine.model.bio.Pathway arg);

    public java.util.Set getuTRs();
    public void setuTRs(final java.util.Set UTRs);
    public void adduTRs(final org.intermine.model.bio.UTR arg);

}