org.intermine.model.bio.OntologyRelationShadow Maven / Gradle / Ivy
package org.intermine.model.bio;
import org.intermine.objectstore.ObjectStore;
import org.intermine.objectstore.intermine.NotXmlParser;
import org.intermine.objectstore.intermine.NotXmlRenderer;
import org.intermine.objectstore.proxy.ProxyReference;
import org.intermine.model.StringConstructor;
import org.intermine.metadata.TypeUtil;
import org.intermine.util.DynamicUtil;
import org.intermine.model.ShadowClass;
public class OntologyRelationShadow implements OntologyRelation, ShadowClass
{
public static final Class shadowOf = OntologyRelation.class;
// Attr: org.intermine.model.bio.OntologyRelation.redundant
protected java.lang.Boolean redundant;
public java.lang.Boolean getRedundant() { return redundant; }
public void setRedundant(final java.lang.Boolean redundant) { this.redundant = redundant; }
// Attr: org.intermine.model.bio.OntologyRelation.direct
protected java.lang.Boolean direct;
public java.lang.Boolean getDirect() { return direct; }
public void setDirect(final java.lang.Boolean direct) { this.direct = direct; }
// Attr: org.intermine.model.bio.OntologyRelation.relationship
protected java.lang.String relationship;
public java.lang.String getRelationship() { return relationship; }
public void setRelationship(final java.lang.String relationship) { this.relationship = relationship; }
// Ref: org.intermine.model.bio.OntologyRelation.parentTerm
protected org.intermine.model.InterMineObject parentTerm;
public org.intermine.model.bio.OntologyTerm getParentTerm() { if (parentTerm instanceof org.intermine.objectstore.proxy.ProxyReference) { return ((org.intermine.model.bio.OntologyTerm) ((org.intermine.objectstore.proxy.ProxyReference) parentTerm).getObject()); }; return (org.intermine.model.bio.OntologyTerm) parentTerm; }
public void setParentTerm(final org.intermine.model.bio.OntologyTerm parentTerm) { this.parentTerm = parentTerm; }
public void proxyParentTerm(final org.intermine.objectstore.proxy.ProxyReference parentTerm) { this.parentTerm = parentTerm; }
public org.intermine.model.InterMineObject proxGetParentTerm() { return parentTerm; }
// Ref: org.intermine.model.bio.OntologyRelation.childTerm
protected org.intermine.model.InterMineObject childTerm;
public org.intermine.model.bio.OntologyTerm getChildTerm() { if (childTerm instanceof org.intermine.objectstore.proxy.ProxyReference) { return ((org.intermine.model.bio.OntologyTerm) ((org.intermine.objectstore.proxy.ProxyReference) childTerm).getObject()); }; return (org.intermine.model.bio.OntologyTerm) childTerm; }
public void setChildTerm(final org.intermine.model.bio.OntologyTerm childTerm) { this.childTerm = childTerm; }
public void proxyChildTerm(final org.intermine.objectstore.proxy.ProxyReference childTerm) { this.childTerm = childTerm; }
public org.intermine.model.InterMineObject proxGetChildTerm() { return childTerm; }
// Attr: org.intermine.model.InterMineObject.id
protected java.lang.Integer id;
public java.lang.Integer getId() { return id; }
public void setId(final java.lang.Integer id) { this.id = id; }
@Override public boolean equals(Object o) { return (o instanceof OntologyRelation && id != null) ? id.equals(((OntologyRelation)o).getId()) : this == o; }
@Override public int hashCode() { return (id != null) ? id.hashCode() : super.hashCode(); }
@Override public String toString() { return "OntologyRelation [childTerm=" + (childTerm == null ? "null" : (childTerm.getId() == null ? "no id" : childTerm.getId().toString())) + ", direct=" + (direct == null ? "null" : "\"" + direct + "\"") + ", id=" + id + ", parentTerm=" + (parentTerm == null ? "null" : (parentTerm.getId() == null ? "no id" : parentTerm.getId().toString())) + ", redundant=" + (redundant == null ? "null" : "\"" + redundant + "\"") + ", relationship=" + (relationship == null ? "null" : "\"" + relationship + "\"") + "]"; }
public Object getFieldValue(final String fieldName) throws IllegalAccessException {
if ("redundant".equals(fieldName)) {
return redundant;
}
if ("direct".equals(fieldName)) {
return direct;
}
if ("relationship".equals(fieldName)) {
return relationship;
}
if ("parentTerm".equals(fieldName)) {
if (parentTerm instanceof ProxyReference) {
return ((ProxyReference) parentTerm).getObject();
} else {
return parentTerm;
}
}
if ("childTerm".equals(fieldName)) {
if (childTerm instanceof ProxyReference) {
return ((ProxyReference) childTerm).getObject();
} else {
return childTerm;
}
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.OntologyRelation.class.equals(getClass())) {
return TypeUtil.getFieldValue(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public Object getFieldProxy(final String fieldName) throws IllegalAccessException {
if ("redundant".equals(fieldName)) {
return redundant;
}
if ("direct".equals(fieldName)) {
return direct;
}
if ("relationship".equals(fieldName)) {
return relationship;
}
if ("parentTerm".equals(fieldName)) {
return parentTerm;
}
if ("childTerm".equals(fieldName)) {
return childTerm;
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.OntologyRelation.class.equals(getClass())) {
return TypeUtil.getFieldProxy(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public void setFieldValue(final String fieldName, final Object value) {
if ("redundant".equals(fieldName)) {
redundant = (java.lang.Boolean) value;
} else if ("direct".equals(fieldName)) {
direct = (java.lang.Boolean) value;
} else if ("relationship".equals(fieldName)) {
relationship = (java.lang.String) value;
} else if ("parentTerm".equals(fieldName)) {
parentTerm = (org.intermine.model.InterMineObject) value;
} else if ("childTerm".equals(fieldName)) {
childTerm = (org.intermine.model.InterMineObject) value;
} else if ("id".equals(fieldName)) {
id = (java.lang.Integer) value;
} else {
if (!org.intermine.model.bio.OntologyRelation.class.equals(getClass())) {
DynamicUtil.setFieldValue(this, fieldName, value);
return;
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}
public Class getFieldType(final String fieldName) {
if ("redundant".equals(fieldName)) {
return java.lang.Boolean.class;
}
if ("direct".equals(fieldName)) {
return java.lang.Boolean.class;
}
if ("relationship".equals(fieldName)) {
return java.lang.String.class;
}
if ("parentTerm".equals(fieldName)) {
return org.intermine.model.bio.OntologyTerm.class;
}
if ("childTerm".equals(fieldName)) {
return org.intermine.model.bio.OntologyTerm.class;
}
if ("id".equals(fieldName)) {
return java.lang.Integer.class;
}
if (!org.intermine.model.bio.OntologyRelation.class.equals(getClass())) {
return TypeUtil.getFieldType(org.intermine.model.bio.OntologyRelation.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public StringConstructor getoBJECT() {
if (!org.intermine.model.bio.OntologyRelationShadow.class.equals(getClass())) {
return NotXmlRenderer.render(this);
}
StringConstructor sb = new StringConstructor();
sb.append("$_^org.intermine.model.bio.OntologyRelation");
if (redundant != null) {
sb.append("$_^aredundant$_^").append(redundant);
}
if (direct != null) {
sb.append("$_^adirect$_^").append(direct);
}
if (relationship != null) {
sb.append("$_^arelationship$_^");
String string = relationship;
while (string != null) {
int delimPosition = string.indexOf("$_^");
if (delimPosition == -1) {
sb.append(string);
string = null;
} else {
sb.append(string.substring(0, delimPosition + 3));
sb.append("d");
string = string.substring(delimPosition + 3);
}
}
}
if (parentTerm != null) {
sb.append("$_^rparentTerm$_^").append(parentTerm.getId());
}
if (childTerm != null) {
sb.append("$_^rchildTerm$_^").append(childTerm.getId());
}
if (id != null) {
sb.append("$_^aid$_^").append(id);
}
return sb;
}
public void setoBJECT(String notXml, ObjectStore os) {
setoBJECT(NotXmlParser.SPLITTER.split(notXml), os);
}
public void setoBJECT(final String[] notXml, final ObjectStore os) {
if (!org.intermine.model.bio.OntologyRelationShadow.class.equals(getClass())) {
throw new IllegalStateException("Class " + getClass().getName() + " does not match code (org.intermine.model.bio.OntologyRelation)");
}
for (int i = 2; i < notXml.length;) {
int startI = i;
if ((i < notXml.length) && "aredundant".equals(notXml[i])) {
i++;
redundant = Boolean.valueOf(notXml[i]);
i++;
}
if ((i < notXml.length) && "adirect".equals(notXml[i])) {
i++;
direct = Boolean.valueOf(notXml[i]);
i++;
}
if ((i < notXml.length) && "arelationship".equals(notXml[i])) {
i++;
StringBuilder string = null;
while ((i + 1 < notXml.length) && (notXml[i + 1].charAt(0) == 'd')) {
if (string == null) string = new StringBuilder(notXml[i]);
i++;
string.append("$_^").append(notXml[i].substring(1));
}
relationship = string == null ? notXml[i] : string.toString();
i++;
}
if ((i < notXml.length) &&"rparentTerm".equals(notXml[i])) {
i++;
parentTerm = new ProxyReference(os, Integer.valueOf(notXml[i]), org.intermine.model.bio.OntologyTerm.class);
i++;
};
if ((i < notXml.length) &&"rchildTerm".equals(notXml[i])) {
i++;
childTerm = new ProxyReference(os, Integer.valueOf(notXml[i]), org.intermine.model.bio.OntologyTerm.class);
i++;
};
if ((i < notXml.length) && "aid".equals(notXml[i])) {
i++;
id = Integer.valueOf(notXml[i]);
i++;
}
if (startI == i) {
throw new IllegalArgumentException("Unknown field " + notXml[i]);
}
}
}
public void addCollectionElement(final String fieldName, final org.intermine.model.InterMineObject element) {
{
if (!org.intermine.model.bio.OntologyRelation.class.equals(getClass())) {
TypeUtil.addCollectionElement(this, fieldName, element);
return;
}
throw new IllegalArgumentException("Unknown collection " + fieldName);
}
}
public Class getElementType(final String fieldName) {
if (!org.intermine.model.bio.OntologyRelation.class.equals(getClass())) {
return TypeUtil.getElementType(org.intermine.model.bio.OntologyRelation.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}