de.regnis.q.sequence.line.QSequenceLineFileSystemCache Maven / Gradle / Ivy
/*
* ====================================================================
* Copyright (c) 2000-2008 SyntEvo GmbH, [email protected]
* All rights reserved.
*
* This software is licensed as described in the file SEQUENCE-LICENSE,
* which you should have received as part of this distribution. Use is
* subject to license terms.
* ====================================================================
*/
package de.regnis.q.sequence.line;
import java.io.IOException;
import java.io.InputStream;
import de.regnis.q.sequence.line.simplifier.*;
/**
* @author Marc Strapetz
*/
final class QSequenceLineFileSystemCache implements QSequenceLineCache {
// Static =================================================================
public static QSequenceLineFileSystemCache create(QSequenceLineRAData data, QSequenceLineTempDirectoryFactory tempDirectoryFactory, int maximumBytesInMemory, int maximumSegmentSize, QSequenceLineSimplifier simplifier) throws IOException {
final QSequenceLineFileSystemCache cache = new QSequenceLineFileSystemCache(data, tempDirectoryFactory, maximumBytesInMemory, maximumSegmentSize, simplifier);
final QSequenceLineReader reader = new QSequenceLineReader();
final InputStream stream = data.read(0, data.length());
reader.read(stream, cache, simplifier);
stream.close();
return cache;
}
// Fields =================================================================
private final QSequenceLineRAData data;
private final QSequenceLineSimplifier simplifier;
private final QSequenceLineFileSystemCacheSegments segments;
private int lineCount;
// Setup ==================================================================
private QSequenceLineFileSystemCache(QSequenceLineRAData data, QSequenceLineTempDirectoryFactory tempDirectoryFactory, int maximumBytesInMemory, int maximumSegmentSize, QSequenceLineSimplifier simplifier) {
this.data = data;
this.simplifier = simplifier;
this.segments = new QSequenceLineFileSystemCacheSegments(tempDirectoryFactory, maximumBytesInMemory, maximumSegmentSize);
}
// Implemented ============================================================
public void close() throws IOException {
segments.close();
}
public void addLine(QSequenceLine line) throws IOException {
if (lineCount >= Integer.MAX_VALUE) {
throw new IOException("Too many lines.");
}
segments.setFromLengthHash(lineCount, line.getFrom(), line.getContentLength(), line.getCompareHash());
lineCount++;
}
public int getLineCount() {
return lineCount;
}
public QSequenceLine getLine(int index) throws IOException {
final long from = segments.getFrom(index);
final int length = segments.getLength(index);
final byte[] bytes = new byte[length];
data.get(bytes, from, length);
return new QSequenceLine(from, bytes, simplifier);
}
public int getLineHash(int index) throws IOException {
return segments.getHash(index);
}
}