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/*
 * Copyright (c) 1998-2018 John Caron and University Corporation for Atmospheric Research/Unidata
 * See LICENSE for license information.
 */
package ucar.nc2.dataset;

import ucar.ma2.*;
import ucar.nc2.*;
import ucar.nc2.util.CancelTask;

import java.util.List;
import java.util.ArrayList;
import java.util.EnumSet;
import java.util.Set;
import java.io.IOException;

/**
 * Make a collection of variables with the same outer dimension into a fake Structure.
 * Its fake because the variables are not stored contiguously.
 * 
 *  so
 *   var1(dim, other);
 *   var2(dim, other);
 *   var3(dim, other);
 * becomes
 *   struct {
 *     var1(other);
 *     var2(other);
 *     var3(other);
 *   } name(dim);
 * 
* @author caron */ public class StructurePseudoDS extends StructureDS { static private org.slf4j.Logger log = org.slf4j.LoggerFactory.getLogger(StructurePseudoDS.class); private static boolean debugRecord = false; protected static final Set enhanceScaleMissing = EnumSet.of(NetcdfDataset.Enhance.ScaleMissing); private List orgVariables = new ArrayList<>(); // the underlying original variables protected StructurePseudoDS( NetcdfDataset ncfile, Group group, String shortName) { super (ncfile, group, shortName); } /** * Make a Structure out of all Variables with the named dimension as their outermost dimension, or from a list * named Variables, each has the same named outermost dimension. * * @param ncfile part of this file * @param group part of this group * @param shortName short name of this Structure * @param varNames limited to these variables, all must have dim as outer dimension. If null, use all Variables * with that outer dimension * @param outerDim existing, outer dimension */ public StructurePseudoDS(NetcdfDataset ncfile, Group group, String shortName, List varNames, Dimension outerDim) { super(ncfile, group, shortName); // cant do this for nested structures setDimensions(outerDim.getShortName()); if (group == null) group = ncfile.getRootGroup(); if (varNames == null) { List vars = group.getVariables(); varNames = new ArrayList<>(vars.size()); for (Variable orgV : vars) { if (orgV.getDataType() == DataType.STRUCTURE) continue; Dimension dim0 = orgV.getDimension(0); if ((dim0 != null) && dim0.equals(outerDim)) varNames.add(orgV.getShortName()); } } for (String name : varNames) { Variable orgV = group.findVariable(name); if (orgV == null) { log.warn("StructurePseudoDS cannot find variable " + name); continue; } Dimension dim0 = orgV.getDimension(0); if (!outerDim.equals(dim0)) throw new IllegalArgumentException("Variable " + orgV.getNameAndDimensions() + " must have outermost dimension=" + outerDim); VariableDS memberV = new VariableDS(ncfile, group, this, orgV.getShortName(), orgV.getDataType(), null, orgV.getUnitsString(), orgV.getDescription()); memberV.setSPobject(orgV.getSPobject()); // ?? memberV.addAll(orgV.getAttributes()); List dims = new ArrayList<>(orgV.getDimensions()); dims.remove(0); //remove outer dimension memberV.setDimensions(dims); memberV.enhance(enhanceScaleMissing); addMemberVariable(memberV); orgVariables.add(orgV); } calcElementSize(); } @Override protected Variable copy() { throw new UnsupportedOperationException(); } @Override public Structure select(List memberNames) { StructurePseudoDS result = new StructurePseudoDS((NetcdfDataset) ncfile, getParentGroup(), getShortName(), memberNames, getDimension(0)); result.isSubset = true; return result; } @Override public boolean removeMemberVariable( Variable v) { if (super.removeMemberVariable(v)) { java.util.Iterator iter = orgVariables.iterator(); while (iter.hasNext()) { Variable mv = iter.next(); if (mv.getShortName().equals(v.getShortName())) { iter.remove(); return true; } } } return false; } @Override public Array reallyRead(Variable mainv, CancelTask cancelTask) throws IOException { if (debugRecord) System.out.println(" read all psuedo records "); StructureMembers smembers = makeStructureMembers(); ArrayStructureMA asma = new ArrayStructureMA( smembers, getShape()); for (Variable v : orgVariables) { Array data = v.read(); StructureMembers.Member m = smembers.findMember(v.getShortName()); m.setDataArray(data); } return asma; } @Override public Array reallyRead(Variable mainv, Section section, CancelTask cancelTask) throws IOException, InvalidRangeException { if (null == section) return _read(); if (debugRecord) System.out.println(" read psuedo records "+ section.getRange(0)); String err = section.checkInRange(getShape()); if (err != null) throw new InvalidRangeException(err); Range r = section.getRange(0); StructureMembers smembers = makeStructureMembers(); ArrayStructureMA asma = new ArrayStructureMA( smembers, section.getShape()); for (Variable v : orgVariables) { List vsection = new ArrayList<>(v.getRanges()); vsection.set(0, r); Array data = v.read(vsection); // LOOK should these be flattened ?? StructureMembers.Member m = smembers.findMember(v.getShortName()); m.setDataArray(data); } return asma; } }




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