ucar.nc2.dataset.transform.CFOceanS Maven / Gradle / Ivy

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/*
 * Copyright (c) 1998-2018 John Caron and University Corporation for Atmospheric Research/Unidata
 * See LICENSE for license information.
 */

package ucar.nc2.dataset.transform;

import ucar.nc2.AttributeContainer;
import ucar.nc2.dataset.*;
import ucar.nc2.Dimension;
import ucar.unidata.geoloc.vertical.OceanS;
import ucar.unidata.util.Parameter;

/**
 * Create a ocean_s_coordinate Vertical Transform from the information in the Coordinate Transform Variable.
 *
 * @author caron
 */
public class CFOceanS extends AbstractTransformBuilder implements VertTransformBuilderIF {
  private String s = "", eta = "", depth = "", a = "", b = "", depth_c = "";

  public String getTransformName() {
    return VerticalCT.Type.OceanS.name();
  }

  public VerticalCT makeCoordinateTransform(NetcdfDataset ds, AttributeContainer ctv) {
    String formula_terms = getFormula(ctv);
    if (null == formula_terms) return null;

     // parse the formula string
    String[] values = parseFormula(formula_terms, "s eta depth a b depth_c");
    if (values == null) return null;

    s = values[0];
    eta = values[1];
    depth = values[2];
    a = values[3];
    b = values[4];
    depth_c = values[5];

    VerticalCT rs = new VerticalCT("OceanS_Transform_"+ctv.getName(), getTransformName(), VerticalCT.Type.OceanS, this);
    rs.addParameter(new Parameter("standard_name", getTransformName()));
    rs.addParameter(new Parameter("formula_terms", formula_terms));
   // rs.addParameter((new Parameter("height_formula", "height(x,y,z) = eta(x,y)*(1+s(z)) + depth_c*s(z) + (depth(x,y)-depth_c)*C(z)")));
     //-sachin 03/25/09 modify formula according to Hernan Arango
    rs.addParameter((new Parameter("height_formula", "height(x,y,z) = depth_c*s(z) + (depth(x,y)-depth_c)*C(z) + eta(x,y) * (1 + (depth_c*s(z) + (depth(x,y)-depth_c)*C(z))/depth(x,y) ")));
    rs.addParameter((new Parameter("C_formula", "C(z) = (1-b)*sinh(a*s(z))/sinh(a) + b*(tanh(a*(s(z)+0.5))/(2*tanh(0.5*a))-0.5)")));

    if (!addParameter(rs, OceanS.ETA, ds, eta)) return null;
    if (!addParameter(rs, OceanS.S, ds, s)) return null;
    if (!addParameter(rs, OceanS.DEPTH, ds, depth)) return null;

    if (!addParameter(rs, OceanS.DEPTH_C, ds, depth_c)) return null;
    if (!addParameter(rs, OceanS.A, ds, a)) return null;
    if (!addParameter(rs, OceanS.B, ds, b)) return null;

    return rs;
  }

  public String toString() {
    return "OceanS:" + " s:"+s + " eta:"+eta + " depth:"+depth + " a:"+a + " b:"+b+" depth_c:"+depth_c;    

  }

  public ucar.unidata.geoloc.vertical.VerticalTransform makeMathTransform(NetcdfDataset ds, Dimension timeDim, VerticalCT vCT) {
    return new OceanS(ds, timeDim, vCT.getParameters());
  }
}