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/* Copyright 2009-2016 David Hadka
*
* This file is part of the MOEA Framework.
*
* The MOEA Framework is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or (at your
* option) any later version.
*
* The MOEA Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the MOEA Framework. If not, see .
*/
package org.moeaframework.algorithm;
import java.io.File;
import java.io.IOException;
import java.util.Properties;
import org.junit.Assert;
import org.junit.Ignore;
import org.junit.Test;
import org.moeaframework.TestUtils;
import org.moeaframework.analysis.collector.Accumulator;
import org.moeaframework.analysis.collector.IndicatorCollector;
import org.moeaframework.analysis.collector.InstrumentedAlgorithm;
import org.moeaframework.analysis.sensitivity.EpsilonHelper;
import org.moeaframework.core.Algorithm;
import org.moeaframework.core.EpsilonBoxDominanceArchive;
import org.moeaframework.core.EvolutionaryAlgorithm;
import org.moeaframework.core.Initialization;
import org.moeaframework.core.NondominatedPopulation;
import org.moeaframework.core.NondominatedSortingPopulation;
import org.moeaframework.core.PRNG;
import org.moeaframework.core.Population;
import org.moeaframework.core.Problem;
import org.moeaframework.core.Variation;
import org.moeaframework.core.comparator.ChainedComparator;
import org.moeaframework.core.comparator.CrowdingComparator;
import org.moeaframework.core.comparator.ParetoDominanceComparator;
import org.moeaframework.core.indicator.Hypervolume;
import org.moeaframework.core.operator.RandomInitialization;
import org.moeaframework.core.operator.TournamentSelection;
import org.moeaframework.core.operator.UniformSelection;
import org.moeaframework.core.operator.real.UM;
import org.moeaframework.core.spi.AlgorithmFactory;
import org.moeaframework.core.spi.OperatorFactory;
import org.moeaframework.core.spi.ProblemFactory;
/**
* Tests if algorithm state can be saved and restored for various algorithms.
*/
public class StandardAlgorithmsResumeTest {
/**
* The number of steps to perform. Must be > 100 to test
* {@link AdaptiveTimeContinuation}.
*/
private static final int N = 200;
@Test
public void testNSGAII() throws IOException {
test("NSGAII");
}
@Test
public void testNSGAIII() throws IOException {
test("NSGAIII");
}
@Test
public void testGDE3() throws IOException {
test("GDE3");
}
@Test
public void testMOEAD() throws IOException {
test("MOEAD");
}
@Test
public void testEpsilonNSGAII() throws IOException {
test("eNSGAII");
}
@Test
public void testEpsilonMOEA() throws IOException {
test("eMOEA");
}
@Test
public void testCMAES() throws IOException {
test("CMA-ES");
}
@Test
public void testSPEA2() throws IOException {
test("SPEA2");
}
@Test
public void testPAES() throws IOException {
test("PAES");
}
@Test
@Ignore("occasionally fails due to the AdaptiveGridArchive not being serialized properly")
public void testPESA2() throws IOException {
test("PESA2");
}
@Test
public void testOMOPSO() throws IOException {
test("OMOPSO");
}
@Test
public void testSMPSO() throws IOException {
test("SMPSO");
}
@Test
public void testIBEA() throws IOException {
test("IBEA");
}
@Test
public void testSMSEMOA() throws IOException {
test("SMS-EMOA");
}
@Test
public void testVEGA() throws IOException {
test("VEGA");
}
@Test
public void testRVEA() throws IOException {
test("RVEA");
}
@Test
public void testInstrumentedAlgorithm() throws IOException {
testInstrumented("NSGAII");
}
/**
* Tests if a resumed algorithm produces the same outcome as one that never
* resumed.
*
* @param algorithmName the name of the algorithm to test
* @throws IOException if an I/O error occurred
*/
protected void test(String algorithmName) throws IOException {
Problem problem = ProblemFactory.getInstance().getProblem("DTLZ2_2");
long seed = PRNG.getRandom().nextLong();
// first, run the algorithm normally
PRNG.setSeed(seed);
Algorithm algorithm = AlgorithmFactory.getInstance().getAlgorithm(
algorithmName, new Properties(), problem);
for (int i = 0; i < N; i++) {
// Due to how NondominatedSortingPopulation automatically
// recalculates ranks and crowding distances, the checkpoint
// version slightly differs due to an extra update. This hack
// allows this test to align with the checkpoint version.
if (algorithm instanceof EvolutionaryAlgorithm) {
Population population =
((EvolutionaryAlgorithm)algorithm).getPopulation();
if (population instanceof NondominatedSortingPopulation) {
((NondominatedSortingPopulation)population).update();
}
}
algorithm.step();
}
NondominatedPopulation normalResult = algorithm.getResult();
// second, run the algorithm using checkpoints
File file = TestUtils.createTempFile();
Checkpoints checkpoints = null;
PRNG.setSeed(seed);
for (int i = 0; i < N; i++) {
checkpoints = new Checkpoints(
AlgorithmFactory.getInstance().getAlgorithm(
algorithmName, new Properties(), problem),
file, 0);
checkpoints.step();
}
NondominatedPopulation checkpointResult = checkpoints.getResult();
// finally, compare the two results
TestUtils.assertEquals(normalResult, checkpointResult);
}
protected void testInstrumented(String algorithmName) throws IOException {
Problem problem = ProblemFactory.getInstance().getProblem("DTLZ2_2");
NondominatedPopulation referenceSet =
ProblemFactory.getInstance().getReferenceSet("DTLZ2_2");
long seed = PRNG.getRandom().nextLong();
// first, run the algorithm normally
PRNG.setSeed(seed);
Algorithm algorithm = AlgorithmFactory.getInstance().getAlgorithm(
algorithmName, new Properties(), problem);
InstrumentedAlgorithm instrumentedAlgorithm = new InstrumentedAlgorithm(
algorithm, 100);
instrumentedAlgorithm.addCollector(new IndicatorCollector(
new Hypervolume(problem, referenceSet)).attach(algorithm));
for (int i = 0; i < N; i++) {
// Due to how NondominatedSortingPopulation automatically
// recalculates ranks and crowding distances, the checkpoint
// version slightly differs due to an extra update. This hack
// allows this test to align with the checkpoint version.
if (algorithm instanceof EvolutionaryAlgorithm) {
Population population =
((EvolutionaryAlgorithm)algorithm).getPopulation();
if (population instanceof NondominatedSortingPopulation) {
((NondominatedSortingPopulation)population).update();
}
}
instrumentedAlgorithm.step();
}
Accumulator normalResult = instrumentedAlgorithm.getAccumulator();
// second, run the algorithm using checkpoints
File file = TestUtils.createTempFile();
Checkpoints checkpoints = null;
PRNG.setSeed(seed);
for (int i = 0; i < N; i++) {
algorithm = AlgorithmFactory.getInstance().getAlgorithm(
algorithmName, new Properties(), problem);
instrumentedAlgorithm = new InstrumentedAlgorithm(
algorithm, 100);
instrumentedAlgorithm.addCollector(new IndicatorCollector(
new Hypervolume(problem, referenceSet)).attach(algorithm));
checkpoints = new Checkpoints(instrumentedAlgorithm, file, 0);
checkpoints.step();
}
Accumulator checkpointResult = instrumentedAlgorithm.getAccumulator();
// finally, compare the two accumulators
Assert.assertTrue(normalResult.keySet().equals(
checkpointResult.keySet()));
for (String key : normalResult.keySet()) {
Assert.assertEquals(normalResult.size(key),
checkpointResult.size(key));
for (int i = 0; i < normalResult.size(key); i++) {
Assert.assertEquals(normalResult.get(key, i),
checkpointResult.get(key, i));
}
}
}
@Test
public void testEpsilonProgressContinuation() throws IOException {
AlgorithmFactory.setInstance(new TestAlgorithmFactory());
test("EpsilonProgressContinuationTest");
AlgorithmFactory.setInstance(new AlgorithmFactory());
}
private static class TestAlgorithmFactory extends AlgorithmFactory {
@Override
public synchronized Algorithm getAlgorithm(String name, Properties properties,
Problem problem) {
if (name.equalsIgnoreCase("EpsilonProgressContinuationTest")) {
Initialization initialization = new RandomInitialization(
problem, 100);
NondominatedSortingPopulation population =
new NondominatedSortingPopulation(
new ParetoDominanceComparator());
EpsilonBoxDominanceArchive archive =
new EpsilonBoxDominanceArchive(
EpsilonHelper.getEpsilon(problem));
TournamentSelection selection = new TournamentSelection(2,
new ChainedComparator(
new ParetoDominanceComparator(),
new CrowdingComparator()));
Variation variation =
OperatorFactory.getInstance().getVariation(null,
new Properties(), problem);
NSGAII nsgaii = new NSGAII(problem, population, archive,
selection, variation, initialization);
return new EpsilonProgressContinuation(nsgaii, 100, 100, 4.0,
100, 10000, new UniformSelection(), new UM(1.0));
} else {
return super.getAlgorithm(name, properties, problem);
}
}
}
}
