org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata Maven / Gradle / Ivy

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package org.molgenis.genomebrowser.meta;

import static org.molgenis.data.meta.model.EntityType.AttributeRole.ROLE_ID;
import static org.molgenis.data.meta.model.Package.PACKAGE_SEPARATOR;

import org.molgenis.data.meta.AttributeType;
import org.molgenis.data.meta.SystemEntityType;
import org.springframework.stereotype.Component;

@Component
public class GenomeBrowserAttributesMetadata extends SystemEntityType {
  public static final String SIMPLE_NAME = "GenomeBrowserAttributes";

  public static final String GENOMEBROWSERATTRIBUTES =
      GenomeBrowserPackage.PACKAGE_GENOME_BROWSER + PACKAGE_SEPARATOR + SIMPLE_NAME;

  public static final String IDENTIFIER = "id";
  public static final String DEFAULT = "default";
  public static final String ORDER = "order";
  public static final String POS = "pos";
  public static final String CHROM = "chr";
  public static final String REF = "ref";
  public static final String ALT = "alt";
  public static final String STOP = "stop";

  private final GenomeBrowserPackage genomeBrowserPackage;

  public GenomeBrowserAttributesMetadata(GenomeBrowserPackage genomeBrowserPackage) {
    super(SIMPLE_NAME, GenomeBrowserPackage.PACKAGE_GENOME_BROWSER);
    this.genomeBrowserPackage = genomeBrowserPackage;
  }

  @Override
  protected void init() {
    setLabel("Genome Browser Attributes");
    setPackage(genomeBrowserPackage);
    addAttribute(IDENTIFIER, ROLE_ID).setLabel("Identifier").setAuto(false).setNillable(false);
    addAttribute(DEFAULT)
        .setDataType(AttributeType.BOOL)
        .setNillable(false)
        .setLabel("Default configuration");
    addAttribute(ORDER)
        .setDataType(AttributeType.INT)
        .setVisibleExpression("$('" + DEFAULT + "').eq(true).value()")
        .setUnique(true)
        .setLabel("Order")
        .setDescription(
            "The order in which the attributes of an entity are matched to these configurations, first match wins");
    addAttribute(POS)
        .setDataType(AttributeType.STRING)
        .setNillable(false)
        .setLabel("Position attribute name");
    addAttribute(CHROM)
        .setDataType(AttributeType.STRING)
        .setNillable(false)
        .setLabel("Chromosome attribute name");
    addAttribute(REF).setDataType(AttributeType.STRING).setLabel("Reference allele attribute name");
    addAttribute(ALT)
        .setDataType(AttributeType.STRING)
        .setLabel("Alternative allele attribute name");
    addAttribute(STOP).setDataType(AttributeType.STRING).setLabel("Stop position attribute name");
  }
}