org.molgenis.genomebrowser.meta.GenomeBrowserAttributes Maven / Gradle / Ivy

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package org.molgenis.genomebrowser.meta;

import javax.annotation.CheckForNull;
import javax.annotation.Nullable;
import org.molgenis.data.Entity;
import org.molgenis.data.meta.model.EntityType;
import org.molgenis.data.support.StaticEntity;

@SuppressWarnings("unused")
public class GenomeBrowserAttributes extends StaticEntity
    implements Comparable {
  public GenomeBrowserAttributes(Entity entity) {
    super(entity);
  }

  public GenomeBrowserAttributes(EntityType entityType) {
    super(entityType);
  }

  public GenomeBrowserAttributes(String identifier, EntityType entityType) {
    super(identifier, entityType);
  }

  public String getIdentifier() {
    return getString(GenomeBrowserAttributesMetadata.IDENTIFIER);
  }

  public void setIdentifier(String identifier) {
    set(GenomeBrowserAttributesMetadata.IDENTIFIER, identifier);
  }

  public Boolean iDefault() {
    return getBoolean(GenomeBrowserAttributesMetadata.DEFAULT);
  }

  public void setDefault(Boolean isDefault) {
    set(GenomeBrowserAttributesMetadata.DEFAULT, isDefault);
  }

  @Nullable
  @CheckForNull
  public Integer getOrder() {
    return getInt(GenomeBrowserAttributesMetadata.ORDER);
  }

  public void setOrder(Integer order) {
    set(GenomeBrowserAttributesMetadata.ORDER, order);
  }

  public String getPos() {
    return getString(GenomeBrowserAttributesMetadata.POS);
  }

  public void setPos(String pos) {
    set(GenomeBrowserAttributesMetadata.POS, pos);
  }

  public String getChrom() {
    return getString(GenomeBrowserAttributesMetadata.CHROM);
  }

  public void setChrom(String chrom) {
    set(GenomeBrowserAttributesMetadata.CHROM, chrom);
  }

  @Nullable
  @CheckForNull
  public String getRef() {
    return getString(GenomeBrowserAttributesMetadata.REF);
  }

  public void setRef(String ref) {
    set(GenomeBrowserAttributesMetadata.REF, ref);
  }

  @Nullable
  @CheckForNull
  public String getAlt() {
    return getString(GenomeBrowserAttributesMetadata.ALT);
  }

  public void setAlt(String alt) {
    set(GenomeBrowserAttributesMetadata.ALT, alt);
  }

  @Nullable
  @CheckForNull
  public String getStop() {
    return getString(GenomeBrowserAttributesMetadata.STOP);
  }

  public void setStop(String stop) {
    set(GenomeBrowserAttributesMetadata.STOP, stop);
  }

  @Override
  public int compareTo(GenomeBrowserAttributes gba) {
    if (gba.getOrder() == null) return -1;
    if (gba.getOrder() > this.getOrder()) return -1;
    else if (gba.getOrder() < this.getOrder()) return 1;
    return 0;
  }
}