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org.molgenis.omx.patient.Patient Maven / Gradle / Ivy
/* File: org.molgenis.omx/model/Patient.java
* Generator: org.molgenis.generators.DataTypeGen 4.0.0-testing
*
* THIS FILE HAS BEEN GENERATED, PLEASE DO NOT EDIT!
*/
package org.molgenis.omx.patient;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.Set;
import org.molgenis.data.AttributeMetaData;
import org.molgenis.data.support.MapEntity;
import org.molgenis.data.Entity;
/**
* Patient: .
* @author MOLGENIS generator
*/
@javax.persistence.Entity
@javax.persistence.Table(name = "Patient"
)
@javax.xml.bind.annotation.XmlAccessorType(javax.xml.bind.annotation.XmlAccessType.FIELD)
@edu.umd.cs.findbugs.annotations.SuppressWarnings(value={"EI_EXPOSE_REP", "EI_EXPOSE_REP2"}, justification="Exposing internal representation is accepted")
public class Patient extends org.molgenis.omx.observ.target.Individual implements org.molgenis.data.Entity
{
/** default serial version ID */
private static final long serialVersionUID = 1L;
public final static String ENTITY_NAME = "Patient";
// fieldname constants
public final static String ALLELE1 = "Allele1";
public final static String ALLELE2 = "Allele2";
public final static String PHENO = "Pheno";
public final static String PUBMEDID = "PubMedID";
public final static String REFERENCE = "Reference";
public final static String ID = "id";
// member variables (including setters.getters for interface)
public String getEntityName()
{
return ENTITY_NAME;
}
//[type=xref]
@javax.persistence.ManyToOne(fetch=javax.persistence.FetchType.EAGER /*cascade={javax.persistence.CascadeType.MERGE, javax.persistence.CascadeType.PERSIST, javax.persistence.CascadeType.REFRESH}*/)
@javax.persistence.JoinColumn(name="Allele1")
private org.molgenis.omx.xgap.Variant allele1 = null;
//[type=xref]
@javax.persistence.ManyToOne(fetch=javax.persistence.FetchType.EAGER /*cascade={javax.persistence.CascadeType.MERGE, javax.persistence.CascadeType.PERSIST, javax.persistence.CascadeType.REFRESH}*/)
@javax.persistence.JoinColumn(name="Allele2")
private org.molgenis.omx.xgap.Variant allele2 = null;
//[type=string]
@javax.persistence.Column(name="Pheno", length=255)
@javax.xml.bind.annotation.XmlElement(name="pheno")
private String pheno = null;
//[type=string]
@javax.persistence.Column(name="PubMedID", length=255)
@javax.xml.bind.annotation.XmlElement(name="pubMedID")
private String pubMedID = null;
//[type=string]
@javax.persistence.Column(name="Reference", length=255)
@javax.xml.bind.annotation.XmlElement(name="reference")
private String reference = null;
//automatically generated internal id, only for internal use.[type=int]
//constructors
public Patient()
{
//set the type for a new instance
set__Type(this.getClass().getSimpleName());
}
//getters and setters
/**
* Get the .
* @return allele1.
*/
public org.molgenis.omx.xgap.Variant getAllele1()
{
return this.allele1;
}
/**
* Set the .
* @param allele1
*/
public void setAllele1( org.molgenis.omx.xgap.Variant allele1)
{
this.allele1 = allele1;
}
/**
* Get the .
* @return allele2.
*/
public org.molgenis.omx.xgap.Variant getAllele2()
{
return this.allele2;
}
/**
* Set the .
* @param allele2
*/
public void setAllele2( org.molgenis.omx.xgap.Variant allele2)
{
this.allele2 = allele2;
}
/**
* Get the .
* @return pheno.
*/
public String getPheno()
{
return this.pheno;
}
/**
* Set the .
* @param pheno
*/
public void setPheno( String pheno)
{
this.pheno = pheno;
}
/**
* Get the .
* @return pubMedID.
*/
public String getPubMedID()
{
return this.pubMedID;
}
/**
* Set the .
* @param pubMedID
*/
public void setPubMedID( String pubMedID)
{
this.pubMedID = pubMedID;
}
/**
* Get the .
* @return reference.
*/
public String getReference()
{
return this.reference;
}
/**
* Set the .
* @param reference
*/
public void setReference( String reference)
{
this.reference = reference;
}
/**
* Generic getter. Get the property by using the name.
*/
@Override
public Object get(String name)
{
name = name.toLowerCase();
if (name.equals("id"))
return getId();
if (name.equals("identifier"))
return getIdentifier();
if (name.equals("name"))
return getName();
if (name.equals("__type"))
return get__Type();
if(name.equals("__type_label"))
return get__TypeLabel();
if (name.equals("description"))
return getDescription();
if (name.equals("mother"))
return getMother();
if (name.equals("father"))
return getFather();
if (name.equals("allele1"))
return getAllele1();
if (name.equals("allele2"))
return getAllele2();
if (name.equals("pheno"))
return getPheno();
if (name.equals("pubmedid"))
return getPubMedID();
if (name.equals("reference"))
return getReference();
return null;
}
@Override
public void set(org.molgenis.data.Entity entity, boolean strict)
{
//set Id
// query formal name, else lowercase name
if(entity.getInt("id") != null) this.setId(entity.getInt("id"));
else if(entity.getInt("id") != null) this.setId(entity.getInt("id"));
else if(strict) this.setId(entity.getInt("id")); // setting null is not an option due to function overloading
if( entity.getInt("patient_id") != null) this.setId(entity.getInt("patient_id"));
else if( entity.getInt("Patient_id") != null) this.setId(entity.getInt("Patient_id"));
//set Identifier
// query formal name, else lowercase name
if(entity.getString("identifier") != null) this.setIdentifier(entity.getString("identifier"));
else if(entity.getString("Identifier") != null) this.setIdentifier(entity.getString("Identifier"));
else if(strict) this.setIdentifier(entity.getString("identifier")); // setting null is not an option due to function overloading
if( entity.getString("patient_identifier") != null) this.setIdentifier(entity.getString("patient_identifier"));
else if( entity.getString("Patient_Identifier") != null) this.setIdentifier(entity.getString("Patient_Identifier"));
//set Name
// query formal name, else lowercase name
if(entity.getString("name") != null) this.setName(entity.getString("name"));
else if(entity.getString("Name") != null) this.setName(entity.getString("Name"));
else if(strict) this.setName(entity.getString("name")); // setting null is not an option due to function overloading
if( entity.getString("patient_name") != null) this.setName(entity.getString("patient_name"));
else if( entity.getString("Patient_Name") != null) this.setName(entity.getString("Patient_Name"));
//set __Type
// query formal name, else lowercase name
if(entity.getString("__type") != null) this.set__Type(entity.getString("__type"));
else if(entity.getString("__Type") != null) this.set__Type(entity.getString("__Type"));
else if(strict) this.set__Type(entity.getString("__type")); // setting null is not an option due to function overloading
if( entity.getString("patient___type") != null) this.set__Type(entity.getString("patient___type"));
else if( entity.getString("Patient___Type") != null) this.set__Type(entity.getString("Patient___Type"));
//set Description
// query formal name, else lowercase name
if(entity.getString("description") != null) this.setDescription(entity.getString("description"));
else if(entity.getString("description") != null) this.setDescription(entity.getString("description"));
else if(strict) this.setDescription(entity.getString("description")); // setting null is not an option due to function overloading
if( entity.getString("patient_description") != null) this.setDescription(entity.getString("patient_description"));
else if( entity.getString("Patient_description") != null) this.setDescription(entity.getString("Patient_description"));
//set Mother
// query formal name, else lowercase name
if( entity.getEntity("Mother", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setMother(entity.getEntity("Mother", org.molgenis.omx.observ.target.Individual.class));
}
else if( entity.getEntity("mother", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setMother(entity.getEntity("mother", org.molgenis.omx.observ.target.Individual.class));
}
else if( entity.getEntity("Patient_Mother", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setMother(entity.getEntity("Patient_Mother", org.molgenis.omx.observ.target.Individual.class));
}
else if( entity.getEntity("patient_mother", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setMother(entity.getEntity("Patient_Mother", org.molgenis.omx.observ.target.Individual.class));
}
//set Father
// query formal name, else lowercase name
if( entity.getEntity("Father", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setFather(entity.getEntity("Father", org.molgenis.omx.observ.target.Individual.class));
}
else if( entity.getEntity("father", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setFather(entity.getEntity("father", org.molgenis.omx.observ.target.Individual.class));
}
else if( entity.getEntity("Patient_Father", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setFather(entity.getEntity("Patient_Father", org.molgenis.omx.observ.target.Individual.class));
}
else if( entity.getEntity("patient_father", org.molgenis.omx.observ.target.Individual.class) != null) {
this.setFather(entity.getEntity("Patient_Father", org.molgenis.omx.observ.target.Individual.class));
}
//set Allele1
// query formal name, else lowercase name
if( entity.getEntity("Allele1", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele1(entity.getEntity("Allele1", org.molgenis.omx.xgap.Variant.class));
}
else if( entity.getEntity("allele1", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele1(entity.getEntity("allele1", org.molgenis.omx.xgap.Variant.class));
}
else if( entity.getEntity("Patient_Allele1", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele1(entity.getEntity("Patient_Allele1", org.molgenis.omx.xgap.Variant.class));
}
else if( entity.getEntity("patient_allele1", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele1(entity.getEntity("Patient_Allele1", org.molgenis.omx.xgap.Variant.class));
}
//set Allele2
// query formal name, else lowercase name
if( entity.getEntity("Allele2", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele2(entity.getEntity("Allele2", org.molgenis.omx.xgap.Variant.class));
}
else if( entity.getEntity("allele2", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele2(entity.getEntity("allele2", org.molgenis.omx.xgap.Variant.class));
}
else if( entity.getEntity("Patient_Allele2", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele2(entity.getEntity("Patient_Allele2", org.molgenis.omx.xgap.Variant.class));
}
else if( entity.getEntity("patient_allele2", org.molgenis.omx.xgap.Variant.class) != null) {
this.setAllele2(entity.getEntity("Patient_Allele2", org.molgenis.omx.xgap.Variant.class));
}
//set Pheno
// query formal name, else lowercase name
if(entity.getString("pheno") != null) this.setPheno(entity.getString("pheno"));
else if(entity.getString("Pheno") != null) this.setPheno(entity.getString("Pheno"));
else if(strict) this.setPheno(entity.getString("pheno")); // setting null is not an option due to function overloading
if( entity.getString("patient_pheno") != null) this.setPheno(entity.getString("patient_pheno"));
else if( entity.getString("Patient_Pheno") != null) this.setPheno(entity.getString("Patient_Pheno"));
//set PubMedID
// query formal name, else lowercase name
if(entity.getString("pubmedid") != null) this.setPubMedID(entity.getString("pubmedid"));
else if(entity.getString("PubMedID") != null) this.setPubMedID(entity.getString("PubMedID"));
else if(strict) this.setPubMedID(entity.getString("pubmedid")); // setting null is not an option due to function overloading
if( entity.getString("patient_pubmedid") != null) this.setPubMedID(entity.getString("patient_pubmedid"));
else if( entity.getString("Patient_PubMedID") != null) this.setPubMedID(entity.getString("Patient_PubMedID"));
//set Reference
// query formal name, else lowercase name
if(entity.getString("reference") != null) this.setReference(entity.getString("reference"));
else if(entity.getString("Reference") != null) this.setReference(entity.getString("Reference"));
else if(strict) this.setReference(entity.getString("reference")); // setting null is not an option due to function overloading
if( entity.getString("patient_reference") != null) this.setReference(entity.getString("patient_reference"));
else if( entity.getString("Patient_Reference") != null) this.setReference(entity.getString("Patient_Reference"));
}
@Override
public String toString()
{
return this.toString(false);
}
public String toString(boolean verbose)
{
StringBuilder sb = new StringBuilder("Patient(");
sb.append("id='" + getId()+"' ");
sb.append("identifier='" + getIdentifier()+"' ");
sb.append("name='" + getName()+"' ");
sb.append("__Type='" + get__Type()+"' ");
sb.append("description='" + getDescription()+"' ");
sb.append("mother='" + getMother()+"' ");
sb.append("father='" + getFather()+"' ");
sb.append("allele1='" + getAllele1()+"' ");
sb.append("allele2='" + getAllele2()+"' ");
sb.append("pheno='" + getPheno()+"' ");
sb.append("pubMedID='" + getPubMedID()+"' ");
sb.append("reference='" + getReference()+"'");
sb.append(");");
return sb.toString();
}
@Override
public Integer getIdValue()
{
return getId();
}
@Override
public Iterable getAttributeNames()
{
Set attributeNames = new LinkedHashSet();
for (AttributeMetaData attr : new PatientMetaData().getAttributes())
{
attributeNames.add(attr.getName());
}
return attributeNames;
}
@Override
public java.util.List getLabelAttributeNames()
{
java.util.List result = new java.util.ArrayList();
result.add("Identifier");
return result;
}
@Override
public void set(String attributeName, Object value)
{
if("id".equalsIgnoreCase(attributeName)) {
this.setId((Integer)value);
return;
}
if("Identifier".equalsIgnoreCase(attributeName)) {
this.setIdentifier((String)value);
return;
}
if("Name".equalsIgnoreCase(attributeName)) {
this.setName((String)value);
return;
}
if("__Type".equalsIgnoreCase(attributeName)) {
this.set__Type((String)value);
return;
}
if("description".equalsIgnoreCase(attributeName)) {
this.setDescription((String)value);
return;
}
if("Mother".equalsIgnoreCase(attributeName)) {
org.molgenis.omx.observ.target.Individual e = new org.molgenis.omx.observ.target.Individual();
e.set((Entity)value);
this.setMother(e);
return;
}
if("Father".equalsIgnoreCase(attributeName)) {
org.molgenis.omx.observ.target.Individual e = new org.molgenis.omx.observ.target.Individual();
e.set((Entity)value);
this.setFather(e);
return;
}
if("Allele1".equalsIgnoreCase(attributeName)) {
org.molgenis.omx.xgap.Variant e = new org.molgenis.omx.xgap.Variant();
e.set((Entity)value);
this.setAllele1(e);
return;
}
if("Allele2".equalsIgnoreCase(attributeName)) {
org.molgenis.omx.xgap.Variant e = new org.molgenis.omx.xgap.Variant();
e.set((Entity)value);
this.setAllele2(e);
return;
}
if("Pheno".equalsIgnoreCase(attributeName)) {
this.setPheno((String)value);
return;
}
if("PubMedID".equalsIgnoreCase(attributeName)) {
this.setPubMedID((String)value);
return;
}
if("Reference".equalsIgnoreCase(attributeName)) {
this.setReference((String)value);
return;
}
}
@Override
public boolean equals(Object obj)
{
if (this == obj) return true;
if (obj == null) return false;
if (!super.equals(obj)) return false;
if (getClass() != obj.getClass()) return false;
return true;
}
@Override
public int hashCode()
{
int result = super.hashCode();
return result;
}
@Override
public org.molgenis.data.EntityMetaData getEntityMetaData()
{
return new PatientMetaData();
}
}
