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org.molgenis.omx.xgap.VariantMetaData Maven / Gradle / Ivy
/* File: /tmp/molgenis/target/checkout/molgenis-omx-das/target/generated-sources/molgenis/java/org/molgenis/omx/xgap/VariantMetaData.java
* Generator: org.molgenis.generators.EntityMetaDataGen 4.0.0-testing
*
* THIS FILE HAS BEEN GENERATED, PLEASE DO NOT EDIT!
*/
package org.molgenis.omx.xgap;
import static org.molgenis.MolgenisFieldTypes.FieldTypeEnum.*;
import org.molgenis.data.support.DefaultEntityMetaData;
import org.molgenis.data.support.DefaultAttributeMetaData;
public class VariantMetaData extends DefaultEntityMetaData
{
public VariantMetaData()
{
super("Variant", Variant.class);
setLabel("Variant");
setDescription("A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases. A single-nucleotide polymorphism is a DNA sequence variation occurring when a single nucleotide in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes in an individual.");
DefaultAttributeMetaData id = new DefaultAttributeMetaData("id", INT);
id.setLabel("id");
id.setDescription("automatically generated internal id, only for internal use.");
id.setIdAttribute(true);
id.setNillable(false);
id.setReadOnly(true);
id.setUnique(false);
id.setAuto(true);
id.setVisible(false);
id.setAggregateable(false);
addAttributeMetaData(id);
DefaultAttributeMetaData identifier = new DefaultAttributeMetaData("Identifier", STRING);
identifier.setLabel("Identifier");
identifier.setDescription("user supplied or automatically assigned (using a decorator) unique and short identifier, e.g. MA1234");
identifier.setIdAttribute(false);
identifier.setNillable(false);
identifier.setReadOnly(false);
identifier.setUnique(true);
identifier.setAuto(false);
identifier.setLabelAttribute(true);
identifier.setLookupAttribute(true);
identifier.setAggregateable(false);
addAttributeMetaData(identifier);
DefaultAttributeMetaData name = new DefaultAttributeMetaData("Name", STRING);
name.setLabel("Name");
name.setDescription("human readible name, not necessary unique.");
name.setIdAttribute(false);
name.setNillable(false);
name.setReadOnly(false);
name.setUnique(false);
name.setAuto(false);
name.setLookupAttribute(true);
name.setAggregateable(false);
addAttributeMetaData(name);
DefaultAttributeMetaData __Type = new DefaultAttributeMetaData("__Type", ENUM);
__Type.setLabel("__Type");
__Type.setDescription("Subtypes have to be set to allow searching");
__Type.setIdAttribute(false);
__Type.setNillable(false);
__Type.setReadOnly(true);
__Type.setUnique(false);
__Type.setAuto(true);
__Type.setVisible(false);
__Type.setAggregateable(false);
addAttributeMetaData(__Type);
DefaultAttributeMetaData description = new DefaultAttributeMetaData("description", TEXT);
description.setLabel("description");
description.setDescription("(Optional) Rudimentary meta data about the observable feature. Use of ontology terms references to establish unambigious descriptions is recommended");
description.setIdAttribute(false);
description.setNillable(true);
description.setReadOnly(false);
description.setUnique(false);
description.setAuto(false);
description.setLookupAttribute(true);
description.setAggregateable(false);
addAttributeMetaData(description);
DefaultAttributeMetaData chromosome = new DefaultAttributeMetaData("Chromosome", XREF);
chromosome.setLabel("Chromosome");
chromosome.setDescription("Reference to the chromosome this position belongs to.");
chromosome.setIdAttribute(false);
chromosome.setNillable(true);
chromosome.setReadOnly(false);
chromosome.setUnique(false);
chromosome.setAuto(false);
chromosome.setRefEntity(new org.molgenis.omx.xgap.ChromosomeMetaData());
chromosome.setAggregateable(false);
addAttributeMetaData(chromosome);
DefaultAttributeMetaData cM = new DefaultAttributeMetaData("cM", DECIMAL);
cM.setLabel("cMPosition");
cM.setDescription("genetic map position in centi morgan (cM).");
cM.setIdAttribute(false);
cM.setNillable(true);
cM.setReadOnly(false);
cM.setUnique(false);
cM.setAuto(false);
cM.setAggregateable(false);
addAttributeMetaData(cM);
DefaultAttributeMetaData bpStart = new DefaultAttributeMetaData("bpStart", LONG);
bpStart.setLabel("Start (5')");
bpStart.setDescription("numeric basepair postion (5') on the chromosome");
bpStart.setIdAttribute(false);
bpStart.setNillable(true);
bpStart.setReadOnly(false);
bpStart.setUnique(false);
bpStart.setAuto(false);
bpStart.setAggregateable(false);
addAttributeMetaData(bpStart);
DefaultAttributeMetaData bpEnd = new DefaultAttributeMetaData("bpEnd", LONG);
bpEnd.setLabel("End");
bpEnd.setDescription("numeric basepair postion (3') on the chromosome");
bpEnd.setIdAttribute(false);
bpEnd.setNillable(true);
bpEnd.setReadOnly(false);
bpEnd.setUnique(false);
bpEnd.setAuto(false);
bpEnd.setAggregateable(false);
addAttributeMetaData(bpEnd);
DefaultAttributeMetaData seq = new DefaultAttributeMetaData("Seq", TEXT);
seq.setLabel("Seq");
seq.setDescription("The FASTA text representation of the sequence.");
seq.setIdAttribute(false);
seq.setNillable(true);
seq.setReadOnly(false);
seq.setUnique(false);
seq.setAuto(false);
seq.setAggregateable(false);
addAttributeMetaData(seq);
DefaultAttributeMetaData symbol = new DefaultAttributeMetaData("Symbol", STRING);
symbol.setLabel("Symbol");
symbol.setDescription("todo");
symbol.setIdAttribute(false);
symbol.setNillable(true);
symbol.setReadOnly(false);
symbol.setUnique(false);
symbol.setAuto(false);
symbol.setAggregateable(false);
addAttributeMetaData(symbol);
DefaultAttributeMetaData mutationPosition = new DefaultAttributeMetaData("MutationPosition", INT);
mutationPosition.setLabel("MutationPosition");
mutationPosition.setDescription("");
mutationPosition.setIdAttribute(false);
mutationPosition.setNillable(true);
mutationPosition.setReadOnly(false);
mutationPosition.setUnique(false);
mutationPosition.setAuto(false);
mutationPosition.setAggregateable(false);
addAttributeMetaData(mutationPosition);
DefaultAttributeMetaData cdnaPosition = new DefaultAttributeMetaData("CdnaPosition", INT);
cdnaPosition.setLabel("CdnaPosition");
cdnaPosition.setDescription("");
cdnaPosition.setIdAttribute(false);
cdnaPosition.setNillable(true);
cdnaPosition.setReadOnly(false);
cdnaPosition.setUnique(false);
cdnaPosition.setAuto(false);
cdnaPosition.setAggregateable(false);
addAttributeMetaData(cdnaPosition);
DefaultAttributeMetaData aaPosition = new DefaultAttributeMetaData("AaPosition", INT);
aaPosition.setLabel("AaPosition");
aaPosition.setDescription("");
aaPosition.setIdAttribute(false);
aaPosition.setNillable(true);
aaPosition.setReadOnly(false);
aaPosition.setUnique(false);
aaPosition.setAuto(false);
aaPosition.setAggregateable(false);
addAttributeMetaData(aaPosition);
DefaultAttributeMetaData variantLength = new DefaultAttributeMetaData("VariantLength", INT);
variantLength.setLabel("VariantLength");
variantLength.setDescription("");
variantLength.setIdAttribute(false);
variantLength.setNillable(true);
variantLength.setReadOnly(false);
variantLength.setUnique(false);
variantLength.setAuto(false);
variantLength.setAggregateable(false);
addAttributeMetaData(variantLength);
DefaultAttributeMetaData event = new DefaultAttributeMetaData("Event", STRING);
event.setLabel("Event");
event.setDescription("");
event.setIdAttribute(false);
event.setNillable(true);
event.setReadOnly(false);
event.setUnique(false);
event.setAuto(false);
event.setAggregateable(false);
addAttributeMetaData(event);
DefaultAttributeMetaData ntChange = new DefaultAttributeMetaData("NtChange", STRING);
ntChange.setLabel("NtChange");
ntChange.setDescription("");
ntChange.setIdAttribute(false);
ntChange.setNillable(true);
ntChange.setReadOnly(false);
ntChange.setUnique(false);
ntChange.setAuto(false);
ntChange.setAggregateable(false);
addAttributeMetaData(ntChange);
DefaultAttributeMetaData codonchange = new DefaultAttributeMetaData("Codonchange", STRING);
codonchange.setLabel("Codonchange");
codonchange.setDescription("");
codonchange.setIdAttribute(false);
codonchange.setNillable(true);
codonchange.setReadOnly(false);
codonchange.setUnique(false);
codonchange.setAuto(false);
codonchange.setAggregateable(false);
addAttributeMetaData(codonchange);
DefaultAttributeMetaData cdnaNotation = new DefaultAttributeMetaData("CdnaNotation", STRING);
cdnaNotation.setLabel("CdnaNotation");
cdnaNotation.setDescription("");
cdnaNotation.setIdAttribute(false);
cdnaNotation.setNillable(true);
cdnaNotation.setReadOnly(false);
cdnaNotation.setUnique(false);
cdnaNotation.setAuto(false);
cdnaNotation.setAggregateable(false);
addAttributeMetaData(cdnaNotation);
DefaultAttributeMetaData gdnaNotation = new DefaultAttributeMetaData("GdnaNotation", STRING);
gdnaNotation.setLabel("GdnaNotation");
gdnaNotation.setDescription("");
gdnaNotation.setIdAttribute(false);
gdnaNotation.setNillable(true);
gdnaNotation.setReadOnly(false);
gdnaNotation.setUnique(false);
gdnaNotation.setAuto(false);
gdnaNotation.setAggregateable(false);
addAttributeMetaData(gdnaNotation);
DefaultAttributeMetaData aaNotation = new DefaultAttributeMetaData("AaNotation", STRING);
aaNotation.setLabel("AaNotation");
aaNotation.setDescription("");
aaNotation.setIdAttribute(false);
aaNotation.setNillable(true);
aaNotation.setReadOnly(false);
aaNotation.setUnique(false);
aaNotation.setAuto(false);
aaNotation.setAggregateable(false);
addAttributeMetaData(aaNotation);
DefaultAttributeMetaData exon = new DefaultAttributeMetaData("Exon", STRING);
exon.setLabel("Exon");
exon.setDescription("");
exon.setIdAttribute(false);
exon.setNillable(true);
exon.setReadOnly(false);
exon.setUnique(false);
exon.setAuto(false);
exon.setAggregateable(false);
addAttributeMetaData(exon);
DefaultAttributeMetaData consequence = new DefaultAttributeMetaData("Consequence", STRING);
consequence.setLabel("Consequence");
consequence.setDescription("");
consequence.setIdAttribute(false);
consequence.setNillable(true);
consequence.setReadOnly(false);
consequence.setUnique(false);
consequence.setAuto(false);
consequence.setAggregateable(false);
addAttributeMetaData(consequence);
DefaultAttributeMetaData inheritance = new DefaultAttributeMetaData("Inheritance", STRING);
inheritance.setLabel("Inheritance");
inheritance.setDescription("");
inheritance.setIdAttribute(false);
inheritance.setNillable(true);
inheritance.setReadOnly(false);
inheritance.setUnique(false);
inheritance.setAuto(false);
inheritance.setAggregateable(false);
addAttributeMetaData(inheritance);
DefaultAttributeMetaData reportedSNP = new DefaultAttributeMetaData("ReportedSNP", BOOL);
reportedSNP.setLabel("ReportedSNP");
reportedSNP.setDescription("");
reportedSNP.setIdAttribute(false);
reportedSNP.setNillable(true);
reportedSNP.setReadOnly(false);
reportedSNP.setUnique(false);
reportedSNP.setAuto(false);
reportedSNP.setAggregateable(true);
addAttributeMetaData(reportedSNP);
DefaultAttributeMetaData effectOnSplicing = new DefaultAttributeMetaData("EffectOnSplicing", BOOL);
effectOnSplicing.setLabel("EffectOnSplicing");
effectOnSplicing.setDescription("");
effectOnSplicing.setIdAttribute(false);
effectOnSplicing.setNillable(true);
effectOnSplicing.setReadOnly(false);
effectOnSplicing.setUnique(false);
effectOnSplicing.setAuto(false);
effectOnSplicing.setAggregateable(true);
addAttributeMetaData(effectOnSplicing);
DefaultAttributeMetaData pathogenicity = new DefaultAttributeMetaData("Pathogenicity", STRING);
pathogenicity.setLabel("Pathogenicity");
pathogenicity.setDescription("");
pathogenicity.setIdAttribute(false);
pathogenicity.setNillable(true);
pathogenicity.setReadOnly(false);
pathogenicity.setUnique(false);
pathogenicity.setAuto(false);
pathogenicity.setAggregateable(false);
addAttributeMetaData(pathogenicity);
DefaultAttributeMetaData gene = new DefaultAttributeMetaData("Gene", STRING);
gene.setLabel("Gene");
gene.setDescription("");
gene.setIdAttribute(false);
gene.setNillable(true);
gene.setReadOnly(false);
gene.setUnique(false);
gene.setAuto(false);
gene.setAggregateable(false);
addAttributeMetaData(gene);
DefaultAttributeMetaData idMutation = new DefaultAttributeMetaData("IdMutation", INT);
idMutation.setLabel("IdMutation");
idMutation.setDescription("");
idMutation.setIdAttribute(false);
idMutation.setNillable(true);
idMutation.setReadOnly(false);
idMutation.setUnique(false);
idMutation.setAuto(false);
idMutation.setAggregateable(false);
addAttributeMetaData(idMutation);
DefaultAttributeMetaData detailsForMutation = new DefaultAttributeMetaData("DetailsForMutation", HYPERLINK);
detailsForMutation.setLabel("DetailsForMutation");
detailsForMutation.setDescription("");
detailsForMutation.setIdAttribute(false);
detailsForMutation.setNillable(true);
detailsForMutation.setReadOnly(false);
detailsForMutation.setUnique(false);
detailsForMutation.setAuto(false);
detailsForMutation.setAggregateable(false);
addAttributeMetaData(detailsForMutation);
DefaultAttributeMetaData track = new DefaultAttributeMetaData("Track", XREF);
track.setLabel("Track");
track.setDescription("");
track.setIdAttribute(false);
track.setNillable(false);
track.setReadOnly(false);
track.setUnique(false);
track.setAuto(false);
track.setRefEntity(new org.molgenis.omx.xgap.TrackMetaData());
track.setAggregateable(true);
addAttributeMetaData(track);
}
}
