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phenol-io contains the generic I/O functionality for ontologies

There is a newer version: 2.1.1

/**
 * Utilities for Gene Ontology (GO) file I/O.
 *
 * Use {@link org.monarchinitiative.phenol.io.obo.go.GoOboParserOLD} for loading the GO from OBO
 * format, the class Javadoc has a usage example.
 *
 * Use {@link org.monarchinitiative.phenol.io.obo.go.GoGeneAnnotationParser} for loading files in
 * the the "go annotation file" format.
 *
 * @author Manuel Holtgrewe
 */
package org.monarchinitiative.phenol.io.obo.go;