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Mapping for HML XSDs.
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//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.10-b140310.1920 
// See http://java.sun.com/xml/jaxb 
// Any modifications to this file will be lost upon recompilation of the source schema. 
// Generated on: 2015.06.03 at 09:54:38 AM CDT 
//


package org.nmdp.ngs.hml.jaxb;

import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlType;


/**
 * 
 *         Reports the raw sequence reads generated by an NGS platform. Because 
 *         various platforms report reads in various formats, the platform must be
 *         specified. Since this data is quite large even for relatively small
 *         regions of the genome, this information must be linked to using an 
 *         external URI.
 * 
 *         Attributes:
 *         -----------
 *         - uri: An external link to the raw reads. (required)
 *         - format: Identifies the format of the data located at the URI. (required)
 *         - paired: true/false (default) (required)
 *         - pooled: true/false (default) (required)
 *         - availability: public|private|permission (optional)
 *         - adapterTrimmed: true/false (default) (required)
 *         - qualityTrimmed: true/false (default) (required)
 *     
 * 
 * Java class for raw-reads complex type.
 * 
 * 
The following schema fragment specifies the expected content contained within this class.
 * 
 * 
 * <complexType name="raw-reads">
 *   <complexContent>
 *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *       <attribute name="uri" use="required">
 *         <simpleType>
 *           <restriction base="{http://www.w3.org/2001/XMLSchema}anyURI">
 *             <minLength value="5"/>
 *           </restriction>
 *         </simpleType>
 *       </attribute>
 *       <attribute name="format" use="required">
 *         <simpleType>
 *           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
 *             <minLength value="1"/>
 *           </restriction>
 *         </simpleType>
 *       </attribute>
 *       <attribute name="paired" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="pooled" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="availability">
 *         <simpleType>
 *           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
 *             <enumeration value="public"/>
 *             <enumeration value="private"/>
 *             <enumeration value="permission"/>
 *           </restriction>
 *         </simpleType>
 *       </attribute>
 *       <attribute name="adapter-trimmed" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="quality-trimmed" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *     </restriction>
 *   </complexContent>
 * </complexType>
 * 
 * 
 * 
 */
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "raw-reads")
public class RawReads {

    @XmlAttribute(name = "uri", required = true)
    protected String uri;
    @XmlAttribute(name = "format", required = true)
    protected String format;
    @XmlAttribute(name = "paired", required = true)
    protected boolean paired;
    @XmlAttribute(name = "pooled", required = true)
    protected boolean pooled;
    @XmlAttribute(name = "availability")
    protected String availability;
    @XmlAttribute(name = "adapter-trimmed", required = true)
    protected boolean adapterTrimmed;
    @XmlAttribute(name = "quality-trimmed", required = true)
    protected boolean qualityTrimmed;

    /**
     * Gets the value of the uri property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getUri() {
        return uri;
    }

    /**
     * Sets the value of the uri property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setUri(String value) {
        this.uri = value;
    }

    /**
     * Gets the value of the format property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getFormat() {
        return format;
    }

    /**
     * Sets the value of the format property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setFormat(String value) {
        this.format = value;
    }

    /**
     * Gets the value of the paired property.
     * 
     */
    public boolean isPaired() {
        return paired;
    }

    /**
     * Sets the value of the paired property.
     * 
     */
    public void setPaired(boolean value) {
        this.paired = value;
    }

    /**
     * Gets the value of the pooled property.
     * 
     */
    public boolean isPooled() {
        return pooled;
    }

    /**
     * Sets the value of the pooled property.
     * 
     */
    public void setPooled(boolean value) {
        this.pooled = value;
    }

    /**
     * Gets the value of the availability property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getAvailability() {
        return availability;
    }

    /**
     * Sets the value of the availability property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setAvailability(String value) {
        this.availability = value;
    }

    /**
     * Gets the value of the adapterTrimmed property.
     * 
     */
    public boolean isAdapterTrimmed() {
        return adapterTrimmed;
    }

    /**
     * Sets the value of the adapterTrimmed property.
     * 
     */
    public void setAdapterTrimmed(boolean value) {
        this.adapterTrimmed = value;
    }

    /**
     * Gets the value of the qualityTrimmed property.
     * 
     */
    public boolean isQualityTrimmed() {
        return qualityTrimmed;
    }

    /**
     * Sets the value of the qualityTrimmed property.
     * 
     */
    public void setQualityTrimmed(boolean value) {
        this.qualityTrimmed = value;
    }

}