org.nmdp.ngs.hml.jaxb.ReferenceDatabase Maven / Gradle / Ivy
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.10-b140310.1920
// See http://java.sun.com/xml/jaxb
// Any modifications to this file will be lost upon recompilation of the source schema.
// Generated on: 2015.06.03 at 09:54:38 AM CDT
//
package org.nmdp.ngs.hml.jaxb;
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlID;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlSchemaType;
import javax.xml.bind.annotation.XmlType;
import javax.xml.bind.annotation.adapters.CollapsedStringAdapter;
import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter;
/**
* Java class for anonymous complex type.
*
*
The following schema fragment specifies the expected content contained within this class.
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="reference-sequence" maxOccurs="unbounded">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}ID" />
* <attribute name="name">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="description">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="start" type="{http://schemas.nmdp.org/spec/hml/1.0.1}position-type" />
* <attribute name="end" type="{http://schemas.nmdp.org/spec/hml/1.0.1}position-type" />
* <attribute name="accession">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="strand">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="-1"/>
* <enumeration value="1"/>
* <enumeration value="+"/>
* <enumeration value="-"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="uri" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </sequence>
* <attribute name="name">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="description">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="version">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="availability" use="required">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="public"/>
* <enumeration value="private"/>
* <enumeration value="none"/>
* <enumeration value="PUBLIC"/>
* <enumeration value="PRIVATE"/>
* <enumeration value="NONE"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="curated" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
* <attribute name="uri" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"referenceSequence"
})
@XmlRootElement(name = "reference-database")
public class ReferenceDatabase {
@XmlElement(name = "reference-sequence", required = true)
protected List referenceSequence;
@XmlAttribute(name = "name")
protected String name;
@XmlAttribute(name = "description")
protected String description;
@XmlAttribute(name = "version")
protected String version;
@XmlAttribute(name = "availability", required = true)
protected String availability;
@XmlAttribute(name = "curated")
protected Boolean curated;
@XmlAttribute(name = "uri")
@XmlSchemaType(name = "anyURI")
protected String uri;
/**
* Gets the value of the referenceSequence property.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a set method for the referenceSequence property.
*
*
* For example, to add a new item, do as follows:
*
* getReferenceSequence().add(newItem);
*
*
*
*
* Objects of the following type(s) are allowed in the list
* {@link ReferenceDatabase.ReferenceSequence }
*
*
*/
public List getReferenceSequence() {
if (referenceSequence == null) {
referenceSequence = new ArrayList();
}
return this.referenceSequence;
}
/**
* Gets the value of the name property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getName() {
return name;
}
/**
* Sets the value of the name property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setName(String value) {
this.name = value;
}
/**
* Gets the value of the description property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getDescription() {
return description;
}
/**
* Sets the value of the description property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setDescription(String value) {
this.description = value;
}
/**
* Gets the value of the version property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getVersion() {
return version;
}
/**
* Sets the value of the version property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setVersion(String value) {
this.version = value;
}
/**
* Gets the value of the availability property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getAvailability() {
return availability;
}
/**
* Sets the value of the availability property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setAvailability(String value) {
this.availability = value;
}
/**
* Gets the value of the curated property.
*
* @return
* possible object is
* {@link Boolean }
*
*/
public boolean isCurated() {
if (curated == null) {
return true;
} else {
return curated;
}
}
/**
* Sets the value of the curated property.
*
* @param value
* allowed object is
* {@link Boolean }
*
*/
public void setCurated(Boolean value) {
this.curated = value;
}
/**
* Gets the value of the uri property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getUri() {
return uri;
}
/**
* Sets the value of the uri property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setUri(String value) {
this.uri = value;
}
/**
* Java class for anonymous complex type.
*
*
The following schema fragment specifies the expected content contained within this class.
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}ID" />
* <attribute name="name">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="description">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="start" type="{http://schemas.nmdp.org/spec/hml/1.0.1}position-type" />
* <attribute name="end" type="{http://schemas.nmdp.org/spec/hml/1.0.1}position-type" />
* <attribute name="accession">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <minLength value="1"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="strand">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="-1"/>
* <enumeration value="1"/>
* <enumeration value="+"/>
* <enumeration value="-"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="uri" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "")
public static class ReferenceSequence {
@XmlAttribute(name = "id", required = true)
@XmlJavaTypeAdapter(CollapsedStringAdapter.class)
@XmlID
@XmlSchemaType(name = "ID")
protected String id;
@XmlAttribute(name = "name")
protected String name;
@XmlAttribute(name = "description")
protected String description;
@XmlAttribute(name = "start")
protected Long start;
@XmlAttribute(name = "end")
protected Long end;
@XmlAttribute(name = "accession")
protected String accession;
@XmlAttribute(name = "strand")
protected String strand;
@XmlAttribute(name = "uri")
@XmlSchemaType(name = "anyURI")
protected String uri;
/**
* Gets the value of the id property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getId() {
return id;
}
/**
* Sets the value of the id property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setId(String value) {
this.id = value;
}
/**
* Gets the value of the name property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getName() {
return name;
}
/**
* Sets the value of the name property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setName(String value) {
this.name = value;
}
/**
* Gets the value of the description property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getDescription() {
return description;
}
/**
* Sets the value of the description property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setDescription(String value) {
this.description = value;
}
/**
* Gets the value of the start property.
*
* @return
* possible object is
* {@link Long }
*
*/
public Long getStart() {
return start;
}
/**
* Sets the value of the start property.
*
* @param value
* allowed object is
* {@link Long }
*
*/
public void setStart(Long value) {
this.start = value;
}
/**
* Gets the value of the end property.
*
* @return
* possible object is
* {@link Long }
*
*/
public Long getEnd() {
return end;
}
/**
* Sets the value of the end property.
*
* @param value
* allowed object is
* {@link Long }
*
*/
public void setEnd(Long value) {
this.end = value;
}
/**
* Gets the value of the accession property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getAccession() {
return accession;
}
/**
* Sets the value of the accession property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setAccession(String value) {
this.accession = value;
}
/**
* Gets the value of the strand property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getStrand() {
return strand;
}
/**
* Sets the value of the strand property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setStrand(String value) {
this.strand = value;
}
/**
* Gets the value of the uri property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getUri() {
return uri;
}
/**
* Sets the value of the uri property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setUri(String value) {
this.uri = value;
}
}
}