org.nmdp.ngs.sra.jaxb.sample.Sample Maven / Gradle / Ivy
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.10-b140310.1920
// See http://java.sun.com/xml/jaxb
// Any modifications to this file will be lost upon recompilation of the source schema.
// Generated on: 2015.06.22 at 10:48:08 AM CDT
//
package org.nmdp.ngs.sra.jaxb.sample;
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlType;
/**
*
* A Sample defines an isolate of sequenceable material upon which
* sequencing experiments can be based. The Sample object may be a surrogate for taxonomy
* accession or an anonymized individual identifier. Or, it may fully specify
* provenance and isolation method of the starting material.
*
*
* Java class for SampleType complex type.
*
*
The following schema fragment specifies the expected content contained within this class.
*
*
* <complexType name="SampleType">
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="IDENTIFIERS" type="{SRA.common}IdentifierType" minOccurs="0"/>
* <element name="TITLE" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="SAMPLE_NAME">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <all>
* <element name="TAXON_ID" type="{http://www.w3.org/2001/XMLSchema}int"/>
* <element name="SCIENTIFIC_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="COMMON_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="ANONYMIZED_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="INDIVIDUAL_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* </all>
* </restriction>
* </complexContent>
* </complexType>
* </element>
* <element name="DESCRIPTION" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="SAMPLE_LINKS" minOccurs="0">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence maxOccurs="unbounded">
* <element name="SAMPLE_LINK" type="{SRA.common}LinkType"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
* </element>
* <element name="SAMPLE_ATTRIBUTES" minOccurs="0">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence maxOccurs="unbounded">
* <element name="SAMPLE_ATTRIBUTE" type="{SRA.common}AttributeType"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </sequence>
* <attGroup ref="{SRA.common}NameGroup"/>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "SampleType", namespace = "", propOrder = {
"identifiers",
"title",
"sampleName",
"description",
"sampleLinks",
"sampleAttributes"
})
@XmlRootElement(name = "SAMPLE", namespace = "")
public class Sample {
@XmlElement(name = "IDENTIFIERS")
protected IdentifierType identifiers;
@XmlElement(name = "TITLE")
protected String title;
@XmlElement(name = "SAMPLE_NAME", required = true)
protected Sample.SampleName sampleName;
@XmlElement(name = "DESCRIPTION")
protected String description;
@XmlElement(name = "SAMPLE_LINKS")
protected Sample.SampleLinks sampleLinks;
@XmlElement(name = "SAMPLE_ATTRIBUTES")
protected Sample.SampleAttributes sampleAttributes;
@XmlAttribute(name = "alias")
protected String alias;
@XmlAttribute(name = "center_name")
protected String centerName;
@XmlAttribute(name = "broker_name")
protected String brokerName;
@XmlAttribute(name = "accession")
protected String accession;
/**
* Gets the value of the identifiers property.
*
* @return
* possible object is
* {@link IdentifierType }
*
*/
public IdentifierType getIdentifiers() {
return identifiers;
}
/**
* Sets the value of the identifiers property.
*
* @param value
* allowed object is
* {@link IdentifierType }
*
*/
public void setIdentifiers(IdentifierType value) {
this.identifiers = value;
}
/**
* Gets the value of the title property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getTitle() {
return title;
}
/**
* Sets the value of the title property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setTitle(String value) {
this.title = value;
}
/**
* Gets the value of the sampleName property.
*
* @return
* possible object is
* {@link Sample.SampleName }
*
*/
public Sample.SampleName getSampleName() {
return sampleName;
}
/**
* Sets the value of the sampleName property.
*
* @param value
* allowed object is
* {@link Sample.SampleName }
*
*/
public void setSampleName(Sample.SampleName value) {
this.sampleName = value;
}
/**
* Gets the value of the description property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getDescription() {
return description;
}
/**
* Sets the value of the description property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setDescription(String value) {
this.description = value;
}
/**
* Gets the value of the sampleLinks property.
*
* @return
* possible object is
* {@link Sample.SampleLinks }
*
*/
public Sample.SampleLinks getSampleLinks() {
return sampleLinks;
}
/**
* Sets the value of the sampleLinks property.
*
* @param value
* allowed object is
* {@link Sample.SampleLinks }
*
*/
public void setSampleLinks(Sample.SampleLinks value) {
this.sampleLinks = value;
}
/**
* Gets the value of the sampleAttributes property.
*
* @return
* possible object is
* {@link Sample.SampleAttributes }
*
*/
public Sample.SampleAttributes getSampleAttributes() {
return sampleAttributes;
}
/**
* Sets the value of the sampleAttributes property.
*
* @param value
* allowed object is
* {@link Sample.SampleAttributes }
*
*/
public void setSampleAttributes(Sample.SampleAttributes value) {
this.sampleAttributes = value;
}
/**
* Gets the value of the alias property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getAlias() {
return alias;
}
/**
* Sets the value of the alias property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setAlias(String value) {
this.alias = value;
}
/**
* Gets the value of the centerName property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getCenterName() {
return centerName;
}
/**
* Sets the value of the centerName property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setCenterName(String value) {
this.centerName = value;
}
/**
* Gets the value of the brokerName property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getBrokerName() {
return brokerName;
}
/**
* Sets the value of the brokerName property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setBrokerName(String value) {
this.brokerName = value;
}
/**
* Gets the value of the accession property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getAccession() {
return accession;
}
/**
* Sets the value of the accession property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setAccession(String value) {
this.accession = value;
}
/**
* Java class for anonymous complex type.
*
*
The following schema fragment specifies the expected content contained within this class.
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence maxOccurs="unbounded">
* <element name="SAMPLE_ATTRIBUTE" type="{SRA.common}AttributeType"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"sampleAttributes"
})
public static class SampleAttributes {
@XmlElement(name = "SAMPLE_ATTRIBUTE", required = true)
protected List sampleAttributes;
/**
* Gets the value of the sampleAttributes property.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a set method for the sampleAttributes property.
*
*
* For example, to add a new item, do as follows:
*
* getSampleAttributes().add(newItem);
*
*
*
*
* Objects of the following type(s) are allowed in the list
* {@link AttributeType }
*
*
*/
public List getSampleAttributes() {
if (sampleAttributes == null) {
sampleAttributes = new ArrayList();
}
return this.sampleAttributes;
}
}
/**
* Java class for anonymous complex type.
*
*
The following schema fragment specifies the expected content contained within this class.
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence maxOccurs="unbounded">
* <element name="SAMPLE_LINK" type="{SRA.common}LinkType"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"sampleLinks"
})
public static class SampleLinks {
@XmlElement(name = "SAMPLE_LINK", required = true)
protected List sampleLinks;
/**
* Gets the value of the sampleLinks property.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a set method for the sampleLinks property.
*
*
* For example, to add a new item, do as follows:
*
* getSampleLinks().add(newItem);
*
*
*
*
* Objects of the following type(s) are allowed in the list
* {@link LinkType }
*
*
*/
public List getSampleLinks() {
if (sampleLinks == null) {
sampleLinks = new ArrayList();
}
return this.sampleLinks;
}
}
/**
* Java class for anonymous complex type.
*
*
The following schema fragment specifies the expected content contained within this class.
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <all>
* <element name="TAXON_ID" type="{http://www.w3.org/2001/XMLSchema}int"/>
* <element name="SCIENTIFIC_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="COMMON_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="ANONYMIZED_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* <element name="INDIVIDUAL_NAME" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* </all>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
})
public static class SampleName {
@XmlElement(name = "TAXON_ID")
protected int taxonId;
@XmlElement(name = "SCIENTIFIC_NAME")
protected String scientificName;
@XmlElement(name = "COMMON_NAME")
protected String commonName;
@XmlElement(name = "ANONYMIZED_NAME")
protected String anonymizedName;
@XmlElement(name = "INDIVIDUAL_NAME")
protected String individualName;
/**
* Gets the value of the taxonId property.
*
*/
public int getTaxonId() {
return taxonId;
}
/**
* Sets the value of the taxonId property.
*
*/
public void setTaxonId(int value) {
this.taxonId = value;
}
/**
* Gets the value of the scientificName property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getScientificName() {
return scientificName;
}
/**
* Sets the value of the scientificName property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setScientificName(String value) {
this.scientificName = value;
}
/**
* Gets the value of the commonName property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getCommonName() {
return commonName;
}
/**
* Sets the value of the commonName property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setCommonName(String value) {
this.commonName = value;
}
/**
* Gets the value of the anonymizedName property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getAnonymizedName() {
return anonymizedName;
}
/**
* Sets the value of the anonymizedName property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setAnonymizedName(String value) {
this.anonymizedName = value;
}
/**
* Gets the value of the individualName property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getIndividualName() {
return individualName;
}
/**
* Sets the value of the individualName property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setIndividualName(String value) {
this.individualName = value;
}
}
}