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org.nmdp.ngs.sra.jaxb.sample.SpotDescriptorType Maven / Gradle / Ivy

//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.10-b140310.1920 
// See http://java.sun.com/xml/jaxb 
// Any modifications to this file will be lost upon recompilation of the source schema. 
// Generated on: 2015.06.22 at 10:48:08 AM CDT 
//


package org.nmdp.ngs.sra.jaxb.sample;

import java.math.BigInteger;
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlSchemaType;
import javax.xml.bind.annotation.XmlType;
import javax.xml.bind.annotation.XmlValue;


/**
 * 
 *                     The SPOT_DESCRIPTOR specifies how to decode the individual reads of interest from the 
 *                     monolithic spot sequence.  The spot descriptor contains aspects of the experimental design, 
 *                     platform, and processing information.  There will be two methods of specification: one 
 *                     will be an index into a table of typical decodings, the other being an exact specification.                                      
 *                 
 * 
 * 

Java class for SpotDescriptorType complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

 * <complexType name="SpotDescriptorType">
 *   <complexContent>
 *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *       <choice>
 *         <element name="SPOT_DECODE_SPEC">
 *           <complexType>
 *             <complexContent>
 *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                 <sequence>
 *                   <element name="SPOT_LENGTH" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" minOccurs="0"/>
 *                   <element name="READ_SPEC" maxOccurs="unbounded">
 *                     <complexType>
 *                       <complexContent>
 *                         <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                           <sequence>
 *                             <element name="READ_INDEX" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger"/>
 *                             <element name="READ_LABEL" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
 *                             <element name="READ_CLASS">
 *                               <simpleType>
 *                                 <restriction base="{http://www.w3.org/2001/XMLSchema}string">
 *                                   <enumeration value="Application Read"/>
 *                                   <enumeration value="Technical Read"/>
 *                                 </restriction>
 *                               </simpleType>
 *                             </element>
 *                             <element name="READ_TYPE">
 *                               <simpleType>
 *                                 <restriction base="{http://www.w3.org/2001/XMLSchema}string">
 *                                   <enumeration value="Forward"/>
 *                                   <enumeration value="Reverse"/>
 *                                   <enumeration value="Adapter"/>
 *                                   <enumeration value="Primer"/>
 *                                   <enumeration value="Linker"/>
 *                                   <enumeration value="BarCode"/>
 *                                   <enumeration value="Other"/>
 *                                 </restriction>
 *                               </simpleType>
 *                             </element>
 *                             <choice>
 *                               <element name="RELATIVE_ORDER">
 *                                 <complexType>
 *                                   <complexContent>
 *                                     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                                       <attribute name="follows_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
 *                                       <attribute name="precedes_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
 *                                     </restriction>
 *                                   </complexContent>
 *                                 </complexType>
 *                               </element>
 *                               <element name="BASE_COORD" type="{http://www.w3.org/2001/XMLSchema}integer"/>
 *                               <element name="EXPECTED_BASECALL_TABLE">
 *                                 <complexType>
 *                                   <complexContent>
 *                                     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                                       <sequence>
 *                                         <element name="BASECALL" maxOccurs="unbounded">
 *                                           <complexType>
 *                                             <simpleContent>
 *                                               <extension base="<http://www.w3.org/2001/XMLSchema>string">
 *                                                 <attribute name="read_group_tag" type="{http://www.w3.org/2001/XMLSchema}string" />
 *                                                 <attribute name="min_match" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
 *                                                 <attribute name="max_mismatch" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
 *                                                 <attribute name="match_edge">
 *                                                   <simpleType>
 *                                                     <restriction base="{http://www.w3.org/2001/XMLSchema}string">
 *                                                       <enumeration value="full"/>
 *                                                       <enumeration value="start"/>
 *                                                       <enumeration value="end"/>
 *                                                     </restriction>
 *                                                   </simpleType>
 *                                                 </attribute>
 *                                               </extension>
 *                                             </simpleContent>
 *                                           </complexType>
 *                                         </element>
 *                                       </sequence>
 *                                       <attribute name="default_length" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
 *                                       <attribute name="base_coord" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
 *                                     </restriction>
 *                                   </complexContent>
 *                                 </complexType>
 *                               </element>
 *                             </choice>
 *                           </sequence>
 *                         </restriction>
 *                       </complexContent>
 *                     </complexType>
 *                   </element>
 *                 </sequence>
 *               </restriction>
 *             </complexContent>
 *           </complexType>
 *         </element>
 *       </choice>
 *     </restriction>
 *   </complexContent>
 * </complexType>
 * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "SpotDescriptorType", propOrder = { "spotDecodeSpec" }) public class SpotDescriptorType { @XmlElement(name = "SPOT_DECODE_SPEC") protected SpotDescriptorType.SpotDecodeSpec spotDecodeSpec; /** * Gets the value of the spotDecodeSpec property. * * @return * possible object is * {@link SpotDescriptorType.SpotDecodeSpec } * */ public SpotDescriptorType.SpotDecodeSpec getSpotDecodeSpec() { return spotDecodeSpec; } /** * Sets the value of the spotDecodeSpec property. * * @param value * allowed object is * {@link SpotDescriptorType.SpotDecodeSpec } * */ public void setSpotDecodeSpec(SpotDescriptorType.SpotDecodeSpec value) { this.spotDecodeSpec = value; } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

     * <complexType>
     *   <complexContent>
     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *       <sequence>
     *         <element name="SPOT_LENGTH" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" minOccurs="0"/>
     *         <element name="READ_SPEC" maxOccurs="unbounded">
     *           <complexType>
     *             <complexContent>
     *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *                 <sequence>
     *                   <element name="READ_INDEX" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger"/>
     *                   <element name="READ_LABEL" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
     *                   <element name="READ_CLASS">
     *                     <simpleType>
     *                       <restriction base="{http://www.w3.org/2001/XMLSchema}string">
     *                         <enumeration value="Application Read"/>
     *                         <enumeration value="Technical Read"/>
     *                       </restriction>
     *                     </simpleType>
     *                   </element>
     *                   <element name="READ_TYPE">
     *                     <simpleType>
     *                       <restriction base="{http://www.w3.org/2001/XMLSchema}string">
     *                         <enumeration value="Forward"/>
     *                         <enumeration value="Reverse"/>
     *                         <enumeration value="Adapter"/>
     *                         <enumeration value="Primer"/>
     *                         <enumeration value="Linker"/>
     *                         <enumeration value="BarCode"/>
     *                         <enumeration value="Other"/>
     *                       </restriction>
     *                     </simpleType>
     *                   </element>
     *                   <choice>
     *                     <element name="RELATIVE_ORDER">
     *                       <complexType>
     *                         <complexContent>
     *                           <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *                             <attribute name="follows_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
     *                             <attribute name="precedes_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
     *                           </restriction>
     *                         </complexContent>
     *                       </complexType>
     *                     </element>
     *                     <element name="BASE_COORD" type="{http://www.w3.org/2001/XMLSchema}integer"/>
     *                     <element name="EXPECTED_BASECALL_TABLE">
     *                       <complexType>
     *                         <complexContent>
     *                           <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *                             <sequence>
     *                               <element name="BASECALL" maxOccurs="unbounded">
     *                                 <complexType>
     *                                   <simpleContent>
     *                                     <extension base="<http://www.w3.org/2001/XMLSchema>string">
     *                                       <attribute name="read_group_tag" type="{http://www.w3.org/2001/XMLSchema}string" />
     *                                       <attribute name="min_match" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
     *                                       <attribute name="max_mismatch" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
     *                                       <attribute name="match_edge">
     *                                         <simpleType>
     *                                           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
     *                                             <enumeration value="full"/>
     *                                             <enumeration value="start"/>
     *                                             <enumeration value="end"/>
     *                                           </restriction>
     *                                         </simpleType>
     *                                       </attribute>
     *                                     </extension>
     *                                   </simpleContent>
     *                                 </complexType>
     *                               </element>
     *                             </sequence>
     *                             <attribute name="default_length" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
     *                             <attribute name="base_coord" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
     *                           </restriction>
     *                         </complexContent>
     *                       </complexType>
     *                     </element>
     *                   </choice>
     *                 </sequence>
     *               </restriction>
     *             </complexContent>
     *           </complexType>
     *         </element>
     *       </sequence>
     *     </restriction>
     *   </complexContent>
     * </complexType>
     * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "spotLength", "readSpecs" }) public static class SpotDecodeSpec { @XmlElement(name = "SPOT_LENGTH") @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger spotLength; @XmlElement(name = "READ_SPEC", required = true) protected List readSpecs; /** * Gets the value of the spotLength property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getSpotLength() { return spotLength; } /** * Sets the value of the spotLength property. * * @param value * allowed object is * {@link BigInteger } * */ public void setSpotLength(BigInteger value) { this.spotLength = value; } /** * Gets the value of the readSpecs property. * *

* This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. * This is why there is not a set method for the readSpecs property. * *

* For example, to add a new item, do as follows: *

         *    getReadSpecs().add(newItem);
         * 
* * *

* Objects of the following type(s) are allowed in the list * {@link SpotDescriptorType.SpotDecodeSpec.ReadSpec } * * */ public List getReadSpecs() { if (readSpecs == null) { readSpecs = new ArrayList(); } return this.readSpecs; } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

         * <complexType>
         *   <complexContent>
         *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
         *       <sequence>
         *         <element name="READ_INDEX" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger"/>
         *         <element name="READ_LABEL" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
         *         <element name="READ_CLASS">
         *           <simpleType>
         *             <restriction base="{http://www.w3.org/2001/XMLSchema}string">
         *               <enumeration value="Application Read"/>
         *               <enumeration value="Technical Read"/>
         *             </restriction>
         *           </simpleType>
         *         </element>
         *         <element name="READ_TYPE">
         *           <simpleType>
         *             <restriction base="{http://www.w3.org/2001/XMLSchema}string">
         *               <enumeration value="Forward"/>
         *               <enumeration value="Reverse"/>
         *               <enumeration value="Adapter"/>
         *               <enumeration value="Primer"/>
         *               <enumeration value="Linker"/>
         *               <enumeration value="BarCode"/>
         *               <enumeration value="Other"/>
         *             </restriction>
         *           </simpleType>
         *         </element>
         *         <choice>
         *           <element name="RELATIVE_ORDER">
         *             <complexType>
         *               <complexContent>
         *                 <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
         *                   <attribute name="follows_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
         *                   <attribute name="precedes_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
         *                 </restriction>
         *               </complexContent>
         *             </complexType>
         *           </element>
         *           <element name="BASE_COORD" type="{http://www.w3.org/2001/XMLSchema}integer"/>
         *           <element name="EXPECTED_BASECALL_TABLE">
         *             <complexType>
         *               <complexContent>
         *                 <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
         *                   <sequence>
         *                     <element name="BASECALL" maxOccurs="unbounded">
         *                       <complexType>
         *                         <simpleContent>
         *                           <extension base="<http://www.w3.org/2001/XMLSchema>string">
         *                             <attribute name="read_group_tag" type="{http://www.w3.org/2001/XMLSchema}string" />
         *                             <attribute name="min_match" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
         *                             <attribute name="max_mismatch" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
         *                             <attribute name="match_edge">
         *                               <simpleType>
         *                                 <restriction base="{http://www.w3.org/2001/XMLSchema}string">
         *                                   <enumeration value="full"/>
         *                                   <enumeration value="start"/>
         *                                   <enumeration value="end"/>
         *                                 </restriction>
         *                               </simpleType>
         *                             </attribute>
         *                           </extension>
         *                         </simpleContent>
         *                       </complexType>
         *                     </element>
         *                   </sequence>
         *                   <attribute name="default_length" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
         *                   <attribute name="base_coord" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
         *                 </restriction>
         *               </complexContent>
         *             </complexType>
         *           </element>
         *         </choice>
         *       </sequence>
         *     </restriction>
         *   </complexContent>
         * </complexType>
         * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "readIndex", "readLabel", "readClass", "readType", "expectedBasecallTable", "baseCoord", "relativeOrder" }) public static class ReadSpec { @XmlElement(name = "READ_INDEX", required = true) @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger readIndex; @XmlElement(name = "READ_LABEL") protected String readLabel; @XmlElement(name = "READ_CLASS", required = true) protected String readClass; @XmlElement(name = "READ_TYPE", required = true, defaultValue = "Forward") protected String readType; @XmlElement(name = "EXPECTED_BASECALL_TABLE") protected SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable expectedBasecallTable; @XmlElement(name = "BASE_COORD") protected BigInteger baseCoord; @XmlElement(name = "RELATIVE_ORDER") protected SpotDescriptorType.SpotDecodeSpec.ReadSpec.RelativeOrder relativeOrder; /** * Gets the value of the readIndex property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getReadIndex() { return readIndex; } /** * Sets the value of the readIndex property. * * @param value * allowed object is * {@link BigInteger } * */ public void setReadIndex(BigInteger value) { this.readIndex = value; } /** * Gets the value of the readLabel property. * * @return * possible object is * {@link String } * */ public String getReadLabel() { return readLabel; } /** * Sets the value of the readLabel property. * * @param value * allowed object is * {@link String } * */ public void setReadLabel(String value) { this.readLabel = value; } /** * Gets the value of the readClass property. * * @return * possible object is * {@link String } * */ public String getReadClass() { return readClass; } /** * Sets the value of the readClass property. * * @param value * allowed object is * {@link String } * */ public void setReadClass(String value) { this.readClass = value; } /** * Gets the value of the readType property. * * @return * possible object is * {@link String } * */ public String getReadType() { return readType; } /** * Sets the value of the readType property. * * @param value * allowed object is * {@link String } * */ public void setReadType(String value) { this.readType = value; } /** * Gets the value of the expectedBasecallTable property. * * @return * possible object is * {@link SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable } * */ public SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable getExpectedBasecallTable() { return expectedBasecallTable; } /** * Sets the value of the expectedBasecallTable property. * * @param value * allowed object is * {@link SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable } * */ public void setExpectedBasecallTable(SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable value) { this.expectedBasecallTable = value; } /** * Gets the value of the baseCoord property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getBaseCoord() { return baseCoord; } /** * Sets the value of the baseCoord property. * * @param value * allowed object is * {@link BigInteger } * */ public void setBaseCoord(BigInteger value) { this.baseCoord = value; } /** * Gets the value of the relativeOrder property. * * @return * possible object is * {@link SpotDescriptorType.SpotDecodeSpec.ReadSpec.RelativeOrder } * */ public SpotDescriptorType.SpotDecodeSpec.ReadSpec.RelativeOrder getRelativeOrder() { return relativeOrder; } /** * Sets the value of the relativeOrder property. * * @param value * allowed object is * {@link SpotDescriptorType.SpotDecodeSpec.ReadSpec.RelativeOrder } * */ public void setRelativeOrder(SpotDescriptorType.SpotDecodeSpec.ReadSpec.RelativeOrder value) { this.relativeOrder = value; } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

             * <complexType>
             *   <complexContent>
             *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
             *       <sequence>
             *         <element name="BASECALL" maxOccurs="unbounded">
             *           <complexType>
             *             <simpleContent>
             *               <extension base="<http://www.w3.org/2001/XMLSchema>string">
             *                 <attribute name="read_group_tag" type="{http://www.w3.org/2001/XMLSchema}string" />
             *                 <attribute name="min_match" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
             *                 <attribute name="max_mismatch" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
             *                 <attribute name="match_edge">
             *                   <simpleType>
             *                     <restriction base="{http://www.w3.org/2001/XMLSchema}string">
             *                       <enumeration value="full"/>
             *                       <enumeration value="start"/>
             *                       <enumeration value="end"/>
             *                     </restriction>
             *                   </simpleType>
             *                 </attribute>
             *               </extension>
             *             </simpleContent>
             *           </complexType>
             *         </element>
             *       </sequence>
             *       <attribute name="default_length" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
             *       <attribute name="base_coord" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
             *     </restriction>
             *   </complexContent>
             * </complexType>
             * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "basecalls" }) public static class ExpectedBasecallTable { @XmlElement(name = "BASECALL", required = true) protected List basecalls; @XmlAttribute(name = "default_length") @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger defaultLength; @XmlAttribute(name = "base_coord") @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger baseCoord; /** * Gets the value of the basecalls property. * *

* This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. * This is why there is not a set method for the basecalls property. * *

* For example, to add a new item, do as follows: *

                 *    getBasecalls().add(newItem);
                 * 
* * *

* Objects of the following type(s) are allowed in the list * {@link SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable.Basecall } * * */ public List getBasecalls() { if (basecalls == null) { basecalls = new ArrayList(); } return this.basecalls; } /** * Gets the value of the defaultLength property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getDefaultLength() { return defaultLength; } /** * Sets the value of the defaultLength property. * * @param value * allowed object is * {@link BigInteger } * */ public void setDefaultLength(BigInteger value) { this.defaultLength = value; } /** * Gets the value of the baseCoord property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getBaseCoord() { return baseCoord; } /** * Sets the value of the baseCoord property. * * @param value * allowed object is * {@link BigInteger } * */ public void setBaseCoord(BigInteger value) { this.baseCoord = value; } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

                 * <complexType>
                 *   <simpleContent>
                 *     <extension base="<http://www.w3.org/2001/XMLSchema>string">
                 *       <attribute name="read_group_tag" type="{http://www.w3.org/2001/XMLSchema}string" />
                 *       <attribute name="min_match" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
                 *       <attribute name="max_mismatch" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
                 *       <attribute name="match_edge">
                 *         <simpleType>
                 *           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
                 *             <enumeration value="full"/>
                 *             <enumeration value="start"/>
                 *             <enumeration value="end"/>
                 *           </restriction>
                 *         </simpleType>
                 *       </attribute>
                 *     </extension>
                 *   </simpleContent>
                 * </complexType>
                 * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "value" }) public static class Basecall { @XmlValue protected String value; @XmlAttribute(name = "read_group_tag") protected String readGroupTag; @XmlAttribute(name = "min_match") @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger minMatch; @XmlAttribute(name = "max_mismatch") @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger maxMismatch; @XmlAttribute(name = "match_edge") protected String matchEdge; /** * Gets the value of the value property. * * @return * possible object is * {@link String } * */ public String getValue() { return value; } /** * Sets the value of the value property. * * @param value * allowed object is * {@link String } * */ public void setValue(String value) { this.value = value; } /** * Gets the value of the readGroupTag property. * * @return * possible object is * {@link String } * */ public String getReadGroupTag() { return readGroupTag; } /** * Sets the value of the readGroupTag property. * * @param value * allowed object is * {@link String } * */ public void setReadGroupTag(String value) { this.readGroupTag = value; } /** * Gets the value of the minMatch property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getMinMatch() { return minMatch; } /** * Sets the value of the minMatch property. * * @param value * allowed object is * {@link BigInteger } * */ public void setMinMatch(BigInteger value) { this.minMatch = value; } /** * Gets the value of the maxMismatch property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getMaxMismatch() { return maxMismatch; } /** * Sets the value of the maxMismatch property. * * @param value * allowed object is * {@link BigInteger } * */ public void setMaxMismatch(BigInteger value) { this.maxMismatch = value; } /** * Gets the value of the matchEdge property. * * @return * possible object is * {@link String } * */ public String getMatchEdge() { return matchEdge; } /** * Sets the value of the matchEdge property. * * @param value * allowed object is * {@link String } * */ public void setMatchEdge(String value) { this.matchEdge = value; } } } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

             * <complexType>
             *   <complexContent>
             *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
             *       <attribute name="follows_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
             *       <attribute name="precedes_read_index" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
             *     </restriction>
             *   </complexContent>
             * </complexType>
             * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "") public static class RelativeOrder { @XmlAttribute(name = "follows_read_index") @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger followsReadIndex; @XmlAttribute(name = "precedes_read_index") @XmlSchemaType(name = "nonNegativeInteger") protected BigInteger precedesReadIndex; /** * Gets the value of the followsReadIndex property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getFollowsReadIndex() { return followsReadIndex; } /** * Sets the value of the followsReadIndex property. * * @param value * allowed object is * {@link BigInteger } * */ public void setFollowsReadIndex(BigInteger value) { this.followsReadIndex = value; } /** * Gets the value of the precedesReadIndex property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getPrecedesReadIndex() { return precedesReadIndex; } /** * Sets the value of the precedesReadIndex property. * * @param value * allowed object is * {@link BigInteger } * */ public void setPrecedesReadIndex(BigInteger value) { this.precedesReadIndex = value; } } } } }




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