org.numenta.nupic.util.AbstractSparseBinaryMatrix Maven / Gradle / Ivy
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* Copyright (C) 2014, Numenta, Inc. Unless you have an agreement
* with Numenta, Inc., for a separate license for this software code, the
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
* See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
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package org.numenta.nupic.util;
import java.lang.reflect.Array;
import java.util.Arrays;
import org.numenta.nupic.model.Persistable;
import gnu.trove.TIntCollection;
import gnu.trove.iterator.TIntIterator;
import gnu.trove.list.TIntList;
import gnu.trove.list.array.TIntArrayList;
import gnu.trove.set.TIntSet;
import gnu.trove.set.hash.TIntHashSet;
/**
* Base class for matrices containing specifically binary (0 or 1) integer values
*
* @author David Ray
* @author Jose Luis Martin
*/
@SuppressWarnings("rawtypes")
public abstract class AbstractSparseBinaryMatrix extends AbstractSparseMatrix implements Persistable {
/** keep it simple */
private static final long serialVersionUID = 1L;
private int[] trueCounts;
/**
* Constructs a new {@code AbstractSparseBinaryMatrix} with the specified
* dimensions (defaults to row major ordering)
*
* @param dimensions each indexed value is a dimension size
*/
public AbstractSparseBinaryMatrix(int[] dimensions) {
this(dimensions, false);
}
/**
* Constructs a new {@code AbstractSparseBinaryMatrix} with the specified dimensions,
* allowing the specification of column major ordering if desired.
* (defaults to row major ordering)
*
* @param dimensions each indexed value is a dimension size
* @param useColumnMajorOrdering if true, indicates column first iteration, otherwise
* row first iteration is the default (if false).
*/
public AbstractSparseBinaryMatrix(int[] dimensions, boolean useColumnMajorOrdering) {
super(dimensions, useColumnMajorOrdering);
this.trueCounts = new int[dimensions[0]];
}
/**
* Returns the slice specified by the passed in coordinates.
* The array is returned as an object, therefore it is the caller's
* responsibility to cast the array to the appropriate dimensions.
*
* @param coordinates the coordinates which specify the returned array
* @return the array specified
* @throws IllegalArgumentException if the specified coordinates address
* an actual value instead of the array holding it.
*/
public abstract Object getSlice(int... coordinates);
/**
* Launch getSlice error, to share it with subclass {@link #getSlice(int...)}
* implementations.
* @param coordinates
*/
protected void sliceError(int... coordinates) {
throw new IllegalArgumentException(
"This method only returns the array holding the specified maximum index: " +
Arrays.toString(dimensions));
}
/**
* Calculate the flat indexes of a slice
* @return the flat indexes array
*/
protected int[] getSliceIndexes(int[] coordinates) {
int[] dimensions = getDimensions();
// check for valid coordinates
if (coordinates.length >= dimensions.length) {
sliceError(coordinates);
}
int sliceDimensionsLength = dimensions.length - coordinates.length;
int[] sliceDimensions = (int[]) Array.newInstance(int.class, sliceDimensionsLength);
for (int i = coordinates.length ; i < dimensions.length; i++) {
sliceDimensions[i - coordinates.length] = dimensions[i];
}
int[] elementCoordinates = Arrays.copyOf(coordinates, coordinates.length + 1);
int sliceSize = Arrays.stream(sliceDimensions).reduce((n,i) -> n*i).getAsInt();
int[] slice = new int[sliceSize];
if (coordinates.length + 1 == dimensions.length) {
// last slice
for (int i = 0; i < dimensions[coordinates.length]; i++) {
elementCoordinates[coordinates.length] = i;
Array.set(slice, i, computeIndex(elementCoordinates));
}
}
else {
for (int i = 0; i < dimensions[sliceDimensionsLength]; i++) {
elementCoordinates[coordinates.length] = i;
int[] indexes = getSliceIndexes(elementCoordinates);
System.arraycopy(indexes, 0, slice, i*indexes.length, indexes.length);
}
}
return slice;
}
/**
* Fills the specified results array with the result of the
* matrix vector multiplication.
*
* @param inputVector the right side vector
* @param results the results array
*/
public abstract void rightVecSumAtNZ(int[] inputVector, int[] results);
/**
* Fills the specified results array with the result of the
* matrix vector multiplication.
*
* @param inputVector the right side vector
* @param results the results array
*/
public abstract void rightVecSumAtNZ(int[] inputVector, int[] results, double stimulusThreshold);
/**
* Sets the value at the specified index.
*
* @param index the index the object will occupy
* @param object the object to be indexed.
*/
@Override
public AbstractSparseBinaryMatrix set(int index, int value) {
int[] coordinates = computeCoordinates(index);
return set(value, coordinates);
}
/**
* Sets the value to be indexed at the index
* computed from the specified coordinates.
* @param coordinates the row major coordinates [outer --> ,...,..., inner]
* @param object the object to be indexed.
*/
@Override
public abstract AbstractSparseBinaryMatrix set(int value, int... coordinates);
/**
* Sets the specified values at the specified indexes.
*
* @param indexes indexes of the values to be set
* @param values the values to be indexed.
*
* @return this {@code SparseMatrix} implementation
*/
public AbstractSparseBinaryMatrix set(int[] indexes, int[] values) {
for(int i = 0;i < indexes.length;i++) {
set(indexes[i], values[i]);
}
return this;
}
public Integer get(int... coordinates) {
return get(computeIndex(coordinates));
}
public abstract Integer get(int index);
/**
* Sets the value at the specified index skipping the automatic
* truth statistic tallying of the real method.
*
* @param index the index the object will occupy
* @param object the object to be indexed.
*/
public abstract AbstractSparseBinaryMatrix setForTest(int index, int value);
/**
* Call This for TEST METHODS ONLY
* Sets the specified values at the specified indexes.
*
* @param indexes indexes of the values to be set
* @param values the values to be indexed.
*
* @return this {@code SparseMatrix} implementation
*/
public AbstractSparseBinaryMatrix set(int[] indexes, int[] values, boolean isTest) {
for(int i = 0;i < indexes.length;i++) {
if(isTest) setForTest(indexes[i], values[i]);
else set(indexes[i], values[i]);
}
return this;
}
/**
* Returns the count of 1's set on the specified row.
* @param index
* @return
*/
public int getTrueCount(int index) {
return trueCounts[index];
}
/**
* Sets the count of 1's on the specified row.
* @param index
* @param count
*/
public void setTrueCount(int index, int count) {
this.trueCounts[index] = count;
}
/**
* Get the true counts for all outer indexes.
* @return
*/
public int[] getTrueCounts() {
return trueCounts;
}
/**
* Clears the true counts prior to a cycle where they're
* being set
*/
public void clearStatistics(int row) {
trueCounts[row] = 0;
for (int index : getSliceIndexes(new int[] { row })) {
set(index, 0);
}
}
/**
* Returns the int value at the index computed from the specified coordinates
* @param coordinates the coordinates from which to retrieve the indexed object
* @return the indexed object
*/
public int getIntValue(int... coordinates) {
return get(computeIndex(coordinates));
}
/**
* Returns the T at the specified index.
*
* @param index the index of the T to return
* @return the T at the specified index.
*/
@Override
public int getIntValue(int index) {
return get(index);
}
/**
* Returns a sorted array of occupied indexes.
* @return a sorted array of occupied indexes.
*/
@Override
public int[] getSparseIndices() {
TIntList indexes = new TIntArrayList();
for (int i = 0; i <= getMaxIndex(); i ++) {
if (get(i) > 0) {
indexes.add(i);
}
}
return indexes.toArray();
}
/**
* This {@code SparseBinaryMatrix} will contain the operation of or-ing
* the inputMatrix with the contents of this matrix; returning this matrix
* as the result.
*
* @param inputMatrix the matrix containing the "on" bits to or
* @return this matrix
*/
public AbstractSparseBinaryMatrix or(AbstractSparseBinaryMatrix inputMatrix) {
int[] mask = inputMatrix.getSparseIndices();
int[] ones = new int[mask.length];
Arrays.fill(ones, 1);
return set(mask, ones);
}
/**
* This {@code SparseBinaryMatrix} will contain the operation of or-ing
* the sparse list with the contents of this matrix; returning this matrix
* as the result.
*
* @param onBitIndexes the matrix containing the "on" bits to or
* @return this matrix
*/
public AbstractSparseBinaryMatrix or(TIntCollection onBitIndexes) {
int[] ones = new int[onBitIndexes.size()];
Arrays.fill(ones, 1);
return set(onBitIndexes.toArray(), ones);
}
/**
* This {@code SparseBinaryMatrix} will contain the operation of or-ing
* the sparse array with the contents of this matrix; returning this matrix
* as the result.
*
* @param onBitIndexes the int array containing the "on" bits to or
* @return this matrix
*/
public AbstractSparseBinaryMatrix or(int[] onBitIndexes) {
int[] ones = new int[onBitIndexes.length];
Arrays.fill(ones, 1);
return set(onBitIndexes, ones);
}
protected TIntSet getSparseSet() {
return new TIntHashSet(getSparseIndices());
}
/**
* Returns true if the on bits of the specified matrix are
* matched by the on bits of this matrix. It is allowed that
* this matrix have more on bits than the specified matrix.
*
* @param matrix
* @return
*/
public boolean all(AbstractSparseBinaryMatrix matrix) {
return getSparseSet().containsAll(matrix.getSparseIndices());
}
/**
* Returns true if the on bits of the specified list are
* matched by the on bits of this matrix. It is allowed that
* this matrix have more on bits than the specified matrix.
*
* @param matrix
* @return
*/
public boolean all(TIntCollection onBits) {
return getSparseSet().containsAll(onBits);
}
/**
* Returns true if the on bits of the specified array are
* matched by the on bits of this matrix. It is allowed that
* this matrix have more on bits than the specified matrix.
*
* @param matrix
* @return
*/
public boolean all(int[] onBits) {
return getSparseSet().containsAll(onBits);
}
/**
* Returns true if any of the on bits of the specified matrix are
* matched by the on bits of this matrix. It is allowed that
* this matrix have more on bits than the specified matrix.
*
* @param matrix
* @return
*/
public boolean any(AbstractSparseBinaryMatrix matrix) {
TIntSet keySet = getSparseSet();
for(int i : matrix.getSparseIndices()) {
if(keySet.contains(i)) return true;
}
return false;
}
/**
* Returns true if any of the on bit indexes of the specified collection are
* matched by the on bits of this matrix. It is allowed that
* this matrix have more on bits than the specified matrix.
*
* @param matrix
* @return
*/
public boolean any(TIntList onBits) {
TIntSet keySet = getSparseSet();
for(TIntIterator i = onBits.iterator();i.hasNext();) {
if(keySet.contains(i.next())) return true;
}
return false;
}
/**
* Returns true if any of the on bit indexes of the specified matrix are
* matched by the on bits of this matrix. It is allowed that
* this matrix have more on bits than the specified matrix.
*
* @param matrix
* @return
*/
public boolean any(int[] onBits) {
TIntSet keySet = getSparseSet();
for(int i : onBits) {
if(keySet.contains(i)) return true;
}
return false;
}
/* (non-Javadoc)
* @see java.lang.Object#hashCode()
*/
@Override
public int hashCode() {
final int prime = 31;
int result = super.hashCode();
result = prime * result + Arrays.hashCode(trueCounts);
return result;
}
/* (non-Javadoc)
* @see java.lang.Object#equals(java.lang.Object)
*/
@Override
public boolean equals(Object obj) {
if(this == obj)
return true;
if(!super.equals(obj))
return false;
if(getClass() != obj.getClass())
return false;
AbstractSparseBinaryMatrix other = (AbstractSparseBinaryMatrix)obj;
if(!Arrays.equals(trueCounts, other.trueCounts))
return false;
return true;
}
}
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