report_queries.invalid_xref.rq Maven / Gradle / Ivy

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Core library for ROBOT: Library for working with OWL ontologies, especially Open Biological and Biomedical Ontologes (OBO).

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# # Invalid Xref
#
# **Problem:** A database_cross_reference is not in CURIE format.
#
# **Solution:** Replace the reference with a [CURIE](https://www.w3.org/TR/2010/NOTE-curie-20101216/).

PREFIX oboInOwl: 
PREFIX rdfs: 

SELECT DISTINCT ?entity ?property ?value WHERE {
  VALUES ?property {oboInOwl:hasDbXref}
  ?entity ?property ?value .
  FILTER (!regex(?value, "^[A-Za-z_][A-Za-z0-9_.-]*[A-Za-z0-9_]:[^\\s]+$"))
  FILTER (!isBlank(?entity))
}
ORDER BY ?entity