All Downloads are FREE. Search and download functionalities are using the official Maven repository.

report_queries.missing_definition.rq Maven / Gradle / Ivy

Go to download

Core library for ROBOT: Library for working with OWL ontologies, especially Open Biological and Biomedical Ontologes (OBO).

The newest version!
# # Missing Definition
#
# **Problem:** An entity does not have a definition or elucidation. This may cause confusion or misuse of the entity. Excludes deprecated entities.
#
# **OBO Foundry Principle:** [6 - Textual Definitions](http://obofoundry.org/principles/fp-006-textual-definitions.html)
#
# **Solution:** Add a definition.

PREFIX obo: 
PREFIX owl: 
PREFIX rdfs: 
PREFIX rdf: 
PREFIX oboInOwl: 

SELECT DISTINCT ?entity ?property ?value WHERE {
  VALUES ?property { obo:IAO_0000115 }
  ?entity ?any ?o
  FILTER NOT EXISTS { ?entity ?property ?value }
  FILTER NOT EXISTS { ?entity obo:IAO_0000600 ?elucidation }
  FILTER NOT EXISTS { ?entity a owl:Ontology }
  FILTER NOT EXISTS { ?entity a owl:NamedIndividual }
  FILTER NOT EXISTS { ?entity owl:deprecated true }
  FILTER NOT EXISTS {
    ?entity rdfs:subPropertyOf oboInOwl:SubsetProperty .
  }
  FILTER EXISTS {
    ?entity ?prop2 ?object .
    FILTER (?prop2 != rdf:type)
    FILTER (?prop2 != owl:equivalentClass)
    FILTER (?prop2 != owl:disjointWith)
    FILTER (?prop2 != owl:equivalentProperty)
    FILTER (?prop2 != owl:sameAs)
    FILTER (?prop2 != owl:differentFrom)
    FILTER (?prop2 != owl:inverseOf)
  }
  FILTER (!isBlank(?entity)) }
ORDER BY ?entity




© 2015 - 2025 Weber Informatics LLC | Privacy Policy