Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance. Project price only 1 $
You can buy this project and download/modify it how often you want.
/*
************************************************************************
******************* CANADIAN ASTRONOMY DATA CENTRE *******************
************** CENTRE CANADIEN DE DONNÉES ASTRONOMIQUES **************
*
* (c) 2016. (c) 2016.
* Government of Canada Gouvernement du Canada
* National Research Council Conseil national de recherches
* Ottawa, Canada, K1A 0R6 Ottawa, Canada, K1A 0R6
* All rights reserved Tous droits réservés
*
* NRC disclaims any warranties, Le CNRC dénie toute garantie
* expressed, implied, or énoncée, implicite ou légale,
* statutory, of any kind with de quelque nature que ce
* respect to the software, soit, concernant le logiciel,
* including without limitation y compris sans restriction
* any warranty of merchantability toute garantie de valeur
* or fitness for a particular marchande ou de pertinence
* purpose. NRC shall not be pour un usage particulier.
* liable in any event for any Le CNRC ne pourra en aucun cas
* damages, whether direct or être tenu responsable de tout
* indirect, special or general, dommage, direct ou indirect,
* consequential or incidental, particulier ou général,
* arising from the use of the accessoire ou fortuit, résultant
* software. Neither the name de l'utilisation du logiciel. Ni
* of the National Research le nom du Conseil National de
* Council of Canada nor the Recherches du Canada ni les noms
* names of its contributors may de ses participants ne peuvent
* be used to endorse or promote être utilisés pour approuver ou
* products derived from this promouvoir les produits dérivés
* software without specific prior de ce logiciel sans autorisation
* written permission. préalable et particulière
* par écrit.
*
* This file is part of the Ce fichier fait partie du projet
* OpenCADC project. OpenCADC.
*
* OpenCADC is free software: OpenCADC est un logiciel libre ;
* you can redistribute it and/or vous pouvez le redistribuer ou le
* modify it under the terms of modifier suivant les termes de
* the GNU Affero General Public la “GNU Affero General Public
* License as published by the License” telle que publiée
* Free Software Foundation, par la Free Software Foundation
* either version 3 of the : soit la version 3 de cette
* License, or (at your option) licence, soit (à votre gré)
* any later version. toute version ultérieure.
*
* OpenCADC is distributed in the OpenCADC est distribué
* hope that it will be useful, dans l’espoir qu’il vous
* but WITHOUT ANY WARRANTY; sera utile, mais SANS AUCUNE
* without even the implied GARANTIE : sans même la garantie
* warranty of MERCHANTABILITY implicite de COMMERCIALISABILITÉ
* or FITNESS FOR A PARTICULAR ni d’ADÉQUATION À UN OBJECTIF
* PURPOSE. See the GNU Affero PARTICULIER. Consultez la Licence
* General Public License for Générale Publique GNU Affero
* more details. pour plus de détails.
*
* You should have received Vous devriez avoir reçu une
* a copy of the GNU Affero copie de la Licence Générale
* General Public License along Publique GNU Affero avec
* with OpenCADC. If not, see OpenCADC ; si ce n’est
* . pas le cas, consultez :
* .
*
* $Revision: 5 $
*
************************************************************************
*/
package ca.nrc.cadc.caom2.repo.action;
import ca.nrc.cadc.ac.UserNotFoundException;
import ca.nrc.cadc.ac.client.GMSClient;
import ca.nrc.cadc.caom2.Artifact;
import ca.nrc.cadc.caom2.Observation;
import ca.nrc.cadc.caom2.ObservationURI;
import ca.nrc.cadc.caom2.Plane;
import ca.nrc.cadc.caom2.ac.ReadAccessGenerator;
import ca.nrc.cadc.caom2.compute.CaomWCSValidator;
import ca.nrc.cadc.caom2.compute.ComputeUtil;
import ca.nrc.cadc.caom2.persistence.DeletedEntityDAO;
import ca.nrc.cadc.caom2.persistence.ObservationDAO;
import ca.nrc.cadc.caom2.repo.CaomRepoConfig;
import ca.nrc.cadc.caom2.util.CaomValidator;
import ca.nrc.cadc.caom2.xml.ObservationParsingException;
import ca.nrc.cadc.cred.client.CredUtil;
import ca.nrc.cadc.date.DateUtil;
import ca.nrc.cadc.io.ByteCountOutputStream;
import ca.nrc.cadc.net.ResourceNotFoundException;
import ca.nrc.cadc.net.TransientException;
import ca.nrc.cadc.rest.InlineContentHandler;
import ca.nrc.cadc.rest.RestAction;
import com.csvreader.CsvWriter;
import java.io.File;
import java.io.IOException;
import java.io.OutputStream;
import java.io.OutputStreamWriter;
import java.net.URI;
import java.net.URISyntaxException;
import java.security.AccessControlException;
import java.security.cert.CertificateException;
import java.text.DateFormat;
import java.text.ParseException;
import java.util.Date;
import java.util.HashMap;
import java.util.Iterator;
import java.util.Map;
import org.apache.log4j.Logger;
import org.opencadc.gms.GroupURI;
/**
* @author pdowler
*/
public abstract class RepoAction extends RestAction {
private static final Logger log = Logger.getLogger(RepoAction.class);
public static final String ERROR_MIMETYPE = "text/plain";
public static final int MAX_LIST_SIZE = 100000;
private static final GroupURI CADC_GROUP_URI = new GroupURI(URI.create("ivo://cadc.nrc.ca/gms?CADC"));
private String collection;
protected ObservationURI uri;
protected boolean computeMetadata;
protected Map raGroupConfig = new HashMap();
private transient CaomRepoConfig repoConfig;
private transient ObservationDAO dao;
private transient DeletedEntityDAO deletedDAO;
protected RepoAction() {
}
private void initTarget() {
if (collection == null) {
String path = syncInput.getPath();
if (path != null) {
String[] parts = path.split("/");
this.collection = parts[0];
if (parts.length > 1) {
String suri = "caom:" + path;
try {
this.uri = new ObservationURI(new URI(suri));
} catch (URISyntaxException | IllegalArgumentException ex) {
throw new IllegalArgumentException("invalid input: " + suri, ex);
}
}
}
}
}
// used by GetAction and GetDeletedAction
protected void doGetCollectionList() throws Exception {
log.debug("START: (collection list)");
initConfig();
Iterator collectionListIterator = repoConfig.collectionIterator();
syncOutput.setHeader("Content-Type", "text/tab-separated-values");
OutputStream os = syncOutput.getOutputStream();
ByteCountOutputStream bc = new ByteCountOutputStream(os);
OutputStreamWriter out = new OutputStreamWriter(bc, "US-ASCII");
CsvWriter writer = new CsvWriter(out, '\t');
while (collectionListIterator.hasNext()) {
String collectionName = collectionListIterator.next();
// Write out a single column as one entry per row
if (!collectionName.isEmpty()) {
writer.write(collectionName);
writer.endRecord();
}
}
writer.flush();
logInfo.setBytes(bc.getByteCount());
}
protected class InputParams {
// default values if called with no params
public Integer maxrec = MAX_LIST_SIZE;
public boolean ascending = true;
public Date start = null;
public Date end = null;
}
/**
* Get InputParams object with listing output control parameters.
*
* @return
*/
protected InputParams getInputParams() {
InputParams ret = new InputParams();
DateFormat df = DateUtil.getDateFormat(DateUtil.IVOA_DATE_FORMAT, DateUtil.UTC);
String str = null;
try {
str = syncInput.getParameter("maxrec");
if (str != null) {
int m = Integer.valueOf(str);
if (m <= 0) {
throw new IllegalArgumentException("invalid maxrec value: " + m + ", maxrec must be > 0");
}
if (m < ret.maxrec) {
ret.maxrec = m;
}
}
} catch (NumberFormatException ex) {
throw new IllegalArgumentException("invalid maxrec value: " + str, ex);
}
try {
str = syncInput.getParameter("start");
if (str != null) {
ret.start = df.parse(str);
}
str = syncInput.getParameter("end");
if (str != null) {
ret.end = df.parse(str);
}
} catch (ParseException ex) {
throw new IllegalArgumentException("invalid date format: " + str, ex);
}
str = syncInput.getParameter("order");
if (str != null) {
if (str.equals("desc")) {
ret.ascending = false;
} else if (!str.equals("asc")) {
throw new IllegalArgumentException("invalid order value: " + str);
}
}
return ret;
}
// return uri for get-observation, null for get-list, and throw for invalid
protected ObservationURI getURI() {
initTarget();
return uri;
}
// return the specified collection or throw for invalid
protected String getCollection() {
initTarget();
return collection;
}
private Map getDAOConfig(String collection) throws IOException {
initConfig();
Map ret = repoConfig.getDAOConfig(collection); // might throw
CaomRepoConfig.Item i = repoConfig.getConfig(collection);
if (i != null) {
this.computeMetadata = i.getComputeMetadata();
this.raGroupConfig.put(ReadAccessGenerator.PROPOSAL_GROUP_KEY, i.getProposalGroup());
this.raGroupConfig.put(ReadAccessGenerator.OPERATOR_GROUP_KEY, i.getOperatorGroup());
this.raGroupConfig.put(ReadAccessGenerator.STAFF_GROUP_KEY, i.getStaffGroup());
}
return ret;
}
protected ObservationDAO getDAO() throws IOException {
if (dao == null) {
this.dao = new ObservationDAO();
dao.setConfig(getDAOConfig(collection));
}
return dao;
}
protected DeletedEntityDAO getDeletedDAO() throws IOException {
if (deletedDAO == null) {
this.deletedDAO = new DeletedEntityDAO();
deletedDAO.setConfig(getDAOConfig(collection));
}
return deletedDAO;
}
// read the input stream (POST and PUT) and extract the observation from the XML
// document
protected Observation getInputObservation() throws ObservationParsingException {
Object o = syncInput.getContent(ObservationInlineContentHandler.ERROR_KEY);
if (o != null) {
ObservationParsingException ex = (ObservationParsingException) o;
throw new IllegalArgumentException("invalid input: " + uri + " reason: " + ex.getMessage(), ex);
}
Object obs = this.syncInput.getContent(ObservationInlineContentHandler.CONTENT_KEY);
if (obs != null) {
return (Observation) obs;
}
return null;
}
/**
* Check if the caller can read the resource.
*
* @throws AccessControlException
* @throws java.security.cert.CertificateException
* @throws ca.nrc.cadc.net.ResourceNotFoundException
* @throws java.io.IOException
*/
protected void checkReadPermission() throws AccessControlException,
CertificateException, ResourceNotFoundException, IOException {
if (!readable) {
if (!writable) {
throw new IllegalStateException(STATE_OFFLINE_MSG);
}
throw new IllegalStateException(STATE_READ_ONLY_MSG);
}
initConfig();
CaomRepoConfig.Item i = repoConfig.getConfig(collection);
if (i == null) {
throw new ResourceNotFoundException("not found: " + uri);
}
if (i.getPublicRead()) {
return;
}
try {
if (CredUtil.checkCredentials()) {
GroupURI grw = i.getReadWriteGroup();
GMSClient gms = new GMSClient(grw.getServiceID());
if (gms.isMember(grw.getName())) {
return;
}
GroupURI gro = i.getReadOnlyGroup();
if (!grw.getServiceID().equals(gro.getServiceID())) {
gms = new GMSClient(gro.getServiceID());
}
if (gms.isMember(gro.getName())) {
return;
}
if (!gro.getServiceID().equals(CADC_GROUP_URI.getServiceID())) {
gms = new GMSClient(CADC_GROUP_URI.getServiceID());
}
if (gms.isMember(CADC_GROUP_URI.getName())) {
return;
}
}
} catch (AccessControlException ex) {
throw new AccessControlException(
"permission denied (credentials not found): " + collection);
} catch (UserNotFoundException ex) {
throw new AccessControlException(
"permission denied (user not found): " + collection);
}
throw new AccessControlException("permission denied: " + collection);
}
/**
* Check if the caller can create or modify the resource.
*
* @throws AccessControlException
* @throws java.security.cert.CertificateException
* @throws ca.nrc.cadc.net.ResourceNotFoundException
* @throws java.io.IOException
*/
protected void checkWritePermission() throws AccessControlException,
CertificateException, ResourceNotFoundException, IOException {
if (!writable) {
if (readable) {
throw new IllegalStateException(STATE_READ_ONLY_MSG);
}
throw new IllegalStateException(STATE_OFFLINE_MSG);
}
initConfig();
CaomRepoConfig.Item i = repoConfig.getConfig(collection);
if (i == null) {
throw new ResourceNotFoundException("not found: " + uri);
}
try {
if (CredUtil.checkCredentials()) {
GroupURI guri = i.getReadWriteGroup();
URI gmsUri = guri.getServiceID();
GMSClient gms = new GMSClient(gmsUri);
if (gms.isMember(guri.getName())) {
return;
}
}
} catch (AccessControlException ex) {
throw new AccessControlException(
"permission denied (credentials not found): " + collection);
} catch (UserNotFoundException ex) {
throw new AccessControlException(
"permission denied (user not found): " + collection);
}
throw new AccessControlException("permission denied: " + collection);
}
protected void validate(Observation obs)
throws AccessControlException, IOException, TransientException {
try {
if (computeMetadata) {
for (Plane p : obs.getPlanes()) {
ComputeUtil.clearTransientState(p);
}
}
CaomValidator.validate(obs);
for (Plane pl : obs.getPlanes()) {
for (Artifact a : pl.getArtifacts()) {
CaomWCSValidator.validate(a);
}
}
if (computeMetadata) {
String ostr = obs.getCollection() + "/" + obs.getObservationID();
String cur = ostr;
try {
for (Plane p : obs.getPlanes()) {
cur = ostr + "/" + p.getProductID();
ComputeUtil.computeTransientState(obs, p);
}
} catch (Error er) {
throw new RuntimeException("failed to compute metadata for plane " + cur, er);
} catch (Exception ex) {
throw new IllegalArgumentException(
"failed to compute metadata for plane " + cur, ex);
}
}
ReadAccessGenerator ratGenerator = getReadAccessTuplesGenerator(getCollection(), raGroupConfig);
if (ratGenerator != null) {
ratGenerator.generateTuples(obs);
}
} catch (IllegalArgumentException ex) {
log.debug(ex.getMessage(), ex);
throw new IllegalArgumentException("invalid input: " + uri + " reason: " + ex.getMessage(), ex);
}
}
@Override
protected InlineContentHandler getInlineContentHandler() {
return null;
}
private void initConfig() throws IOException {
if (this.repoConfig == null) {
String serviceName = syncInput.getContextPath();
File config = new File(System.getProperty("user.home") + "/config",
serviceName + ".properties");
this.repoConfig = new CaomRepoConfig(config);
if (this.repoConfig.isEmpty()) {
throw new IllegalStateException("no RepoConfig.Item(s)found");
}
}
}
/**
* Returns an instance of ReadAccessTuplesGenerator if the read access group are configured.
* Returns null otherwise.
*
* @param collection
* @param raGroupConfig read access group data from configuration file
* @return read access generator plugin or null if not configured
*/
protected ReadAccessGenerator getReadAccessTuplesGenerator(String collection, Map raGroupConfig) {
ReadAccessGenerator ratGenerator = null;
if (raGroupConfig.get(ReadAccessGenerator.STAFF_GROUP_KEY) != null
|| raGroupConfig.get(ReadAccessGenerator.OPERATOR_GROUP_KEY) != null) {
ratGenerator = new ReadAccessGenerator(collection, raGroupConfig);
}
return ratGenerator;
}
}