org.gel.models.report.avro.Diagnostic Maven / Gradle / Ivy
/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.gel.models.report.avro;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class Diagnostic extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"Diagnostic\",\"namespace\":\"org.gel.models.report.avro\",\"fields\":[{\"name\":\"referenceUrl\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"doc\":\"URL where reference information for this prognosis can be found\"},{\"name\":\"sources\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}],\"doc\":\"Sources if known\"},{\"name\":\"references\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}],\"doc\":\"References\"},{\"name\":\"biomarkers\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}],\"doc\":\"Biomarkers\"},{\"name\":\"conditions\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}],\"doc\":\"Associated conditions\"},{\"name\":\"diagnosis\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"Diagnosis\"},{\"name\":\"diagnosisStatus\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"Diagnosis status\"},{\"name\":\"otherCondition\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"Other condition\"},{\"name\":\"variantActionable\",\"type\":\"boolean\",\"doc\":\"If true, the association was made at the variant level, if not the association was made at Genomic Entity level\"}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
/** URL where reference information for this prognosis can be found */
private java.lang.String referenceUrl;
/** Sources if known */
private java.util.List sources;
/** References */
private java.util.List references;
/** Biomarkers */
private java.util.List biomarkers;
/** Associated conditions */
private java.util.List conditions;
/** Diagnosis */
private java.lang.String diagnosis;
/** Diagnosis status */
private java.lang.String diagnosisStatus;
/** Other condition */
private java.lang.String otherCondition;
/** If true, the association was made at the variant level, if not the association was made at Genomic Entity level */
private boolean variantActionable;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public Diagnostic() {}
/**
* All-args constructor.
*/
public Diagnostic(java.lang.String referenceUrl, java.util.List sources, java.util.List references, java.util.List biomarkers, java.util.List conditions, java.lang.String diagnosis, java.lang.String diagnosisStatus, java.lang.String otherCondition, java.lang.Boolean variantActionable) {
this.referenceUrl = referenceUrl;
this.sources = sources;
this.references = references;
this.biomarkers = biomarkers;
this.conditions = conditions;
this.diagnosis = diagnosis;
this.diagnosisStatus = diagnosisStatus;
this.otherCondition = otherCondition;
this.variantActionable = variantActionable;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return referenceUrl;
case 1: return sources;
case 2: return references;
case 3: return biomarkers;
case 4: return conditions;
case 5: return diagnosis;
case 6: return diagnosisStatus;
case 7: return otherCondition;
case 8: return variantActionable;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: referenceUrl = (java.lang.String)value$; break;
case 1: sources = (java.util.List)value$; break;
case 2: references = (java.util.List)value$; break;
case 3: biomarkers = (java.util.List)value$; break;
case 4: conditions = (java.util.List)value$; break;
case 5: diagnosis = (java.lang.String)value$; break;
case 6: diagnosisStatus = (java.lang.String)value$; break;
case 7: otherCondition = (java.lang.String)value$; break;
case 8: variantActionable = (java.lang.Boolean)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'referenceUrl' field.
* URL where reference information for this prognosis can be found */
public java.lang.String getReferenceUrl() {
return referenceUrl;
}
/**
* Sets the value of the 'referenceUrl' field.
* URL where reference information for this prognosis can be found * @param value the value to set.
*/
public void setReferenceUrl(java.lang.String value) {
this.referenceUrl = value;
}
/**
* Gets the value of the 'sources' field.
* Sources if known */
public java.util.List getSources() {
return sources;
}
/**
* Sets the value of the 'sources' field.
* Sources if known * @param value the value to set.
*/
public void setSources(java.util.List value) {
this.sources = value;
}
/**
* Gets the value of the 'references' field.
* References */
public java.util.List getReferences() {
return references;
}
/**
* Sets the value of the 'references' field.
* References * @param value the value to set.
*/
public void setReferences(java.util.List value) {
this.references = value;
}
/**
* Gets the value of the 'biomarkers' field.
* Biomarkers */
public java.util.List getBiomarkers() {
return biomarkers;
}
/**
* Sets the value of the 'biomarkers' field.
* Biomarkers * @param value the value to set.
*/
public void setBiomarkers(java.util.List value) {
this.biomarkers = value;
}
/**
* Gets the value of the 'conditions' field.
* Associated conditions */
public java.util.List getConditions() {
return conditions;
}
/**
* Sets the value of the 'conditions' field.
* Associated conditions * @param value the value to set.
*/
public void setConditions(java.util.List value) {
this.conditions = value;
}
/**
* Gets the value of the 'diagnosis' field.
* Diagnosis */
public java.lang.String getDiagnosis() {
return diagnosis;
}
/**
* Sets the value of the 'diagnosis' field.
* Diagnosis * @param value the value to set.
*/
public void setDiagnosis(java.lang.String value) {
this.diagnosis = value;
}
/**
* Gets the value of the 'diagnosisStatus' field.
* Diagnosis status */
public java.lang.String getDiagnosisStatus() {
return diagnosisStatus;
}
/**
* Sets the value of the 'diagnosisStatus' field.
* Diagnosis status * @param value the value to set.
*/
public void setDiagnosisStatus(java.lang.String value) {
this.diagnosisStatus = value;
}
/**
* Gets the value of the 'otherCondition' field.
* Other condition */
public java.lang.String getOtherCondition() {
return otherCondition;
}
/**
* Sets the value of the 'otherCondition' field.
* Other condition * @param value the value to set.
*/
public void setOtherCondition(java.lang.String value) {
this.otherCondition = value;
}
/**
* Gets the value of the 'variantActionable' field.
* If true, the association was made at the variant level, if not the association was made at Genomic Entity level */
public java.lang.Boolean getVariantActionable() {
return variantActionable;
}
/**
* Sets the value of the 'variantActionable' field.
* If true, the association was made at the variant level, if not the association was made at Genomic Entity level * @param value the value to set.
*/
public void setVariantActionable(java.lang.Boolean value) {
this.variantActionable = value;
}
/** Creates a new Diagnostic RecordBuilder */
public static org.gel.models.report.avro.Diagnostic.Builder newBuilder() {
return new org.gel.models.report.avro.Diagnostic.Builder();
}
/** Creates a new Diagnostic RecordBuilder by copying an existing Builder */
public static org.gel.models.report.avro.Diagnostic.Builder newBuilder(org.gel.models.report.avro.Diagnostic.Builder other) {
return new org.gel.models.report.avro.Diagnostic.Builder(other);
}
/** Creates a new Diagnostic RecordBuilder by copying an existing Diagnostic instance */
public static org.gel.models.report.avro.Diagnostic.Builder newBuilder(org.gel.models.report.avro.Diagnostic other) {
return new org.gel.models.report.avro.Diagnostic.Builder(other);
}
/**
* RecordBuilder for Diagnostic instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String referenceUrl;
private java.util.List sources;
private java.util.List references;
private java.util.List biomarkers;
private java.util.List conditions;
private java.lang.String diagnosis;
private java.lang.String diagnosisStatus;
private java.lang.String otherCondition;
private boolean variantActionable;
/** Creates a new Builder */
private Builder() {
super(org.gel.models.report.avro.Diagnostic.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.gel.models.report.avro.Diagnostic.Builder other) {
super(other);
if (isValidValue(fields()[0], other.referenceUrl)) {
this.referenceUrl = data().deepCopy(fields()[0].schema(), other.referenceUrl);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.sources)) {
this.sources = data().deepCopy(fields()[1].schema(), other.sources);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.references)) {
this.references = data().deepCopy(fields()[2].schema(), other.references);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.biomarkers)) {
this.biomarkers = data().deepCopy(fields()[3].schema(), other.biomarkers);
fieldSetFlags()[3] = true;
}
if (isValidValue(fields()[4], other.conditions)) {
this.conditions = data().deepCopy(fields()[4].schema(), other.conditions);
fieldSetFlags()[4] = true;
}
if (isValidValue(fields()[5], other.diagnosis)) {
this.diagnosis = data().deepCopy(fields()[5].schema(), other.diagnosis);
fieldSetFlags()[5] = true;
}
if (isValidValue(fields()[6], other.diagnosisStatus)) {
this.diagnosisStatus = data().deepCopy(fields()[6].schema(), other.diagnosisStatus);
fieldSetFlags()[6] = true;
}
if (isValidValue(fields()[7], other.otherCondition)) {
this.otherCondition = data().deepCopy(fields()[7].schema(), other.otherCondition);
fieldSetFlags()[7] = true;
}
if (isValidValue(fields()[8], other.variantActionable)) {
this.variantActionable = data().deepCopy(fields()[8].schema(), other.variantActionable);
fieldSetFlags()[8] = true;
}
}
/** Creates a Builder by copying an existing Diagnostic instance */
private Builder(org.gel.models.report.avro.Diagnostic other) {
super(org.gel.models.report.avro.Diagnostic.SCHEMA$);
if (isValidValue(fields()[0], other.referenceUrl)) {
this.referenceUrl = data().deepCopy(fields()[0].schema(), other.referenceUrl);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.sources)) {
this.sources = data().deepCopy(fields()[1].schema(), other.sources);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.references)) {
this.references = data().deepCopy(fields()[2].schema(), other.references);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.biomarkers)) {
this.biomarkers = data().deepCopy(fields()[3].schema(), other.biomarkers);
fieldSetFlags()[3] = true;
}
if (isValidValue(fields()[4], other.conditions)) {
this.conditions = data().deepCopy(fields()[4].schema(), other.conditions);
fieldSetFlags()[4] = true;
}
if (isValidValue(fields()[5], other.diagnosis)) {
this.diagnosis = data().deepCopy(fields()[5].schema(), other.diagnosis);
fieldSetFlags()[5] = true;
}
if (isValidValue(fields()[6], other.diagnosisStatus)) {
this.diagnosisStatus = data().deepCopy(fields()[6].schema(), other.diagnosisStatus);
fieldSetFlags()[6] = true;
}
if (isValidValue(fields()[7], other.otherCondition)) {
this.otherCondition = data().deepCopy(fields()[7].schema(), other.otherCondition);
fieldSetFlags()[7] = true;
}
if (isValidValue(fields()[8], other.variantActionable)) {
this.variantActionable = data().deepCopy(fields()[8].schema(), other.variantActionable);
fieldSetFlags()[8] = true;
}
}
/** Gets the value of the 'referenceUrl' field */
public java.lang.String getReferenceUrl() {
return referenceUrl;
}
/** Sets the value of the 'referenceUrl' field */
public org.gel.models.report.avro.Diagnostic.Builder setReferenceUrl(java.lang.String value) {
validate(fields()[0], value);
this.referenceUrl = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'referenceUrl' field has been set */
public boolean hasReferenceUrl() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'referenceUrl' field */
public org.gel.models.report.avro.Diagnostic.Builder clearReferenceUrl() {
referenceUrl = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'sources' field */
public java.util.List getSources() {
return sources;
}
/** Sets the value of the 'sources' field */
public org.gel.models.report.avro.Diagnostic.Builder setSources(java.util.List value) {
validate(fields()[1], value);
this.sources = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'sources' field has been set */
public boolean hasSources() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'sources' field */
public org.gel.models.report.avro.Diagnostic.Builder clearSources() {
sources = null;
fieldSetFlags()[1] = false;
return this;
}
/** Gets the value of the 'references' field */
public java.util.List getReferences() {
return references;
}
/** Sets the value of the 'references' field */
public org.gel.models.report.avro.Diagnostic.Builder setReferences(java.util.List value) {
validate(fields()[2], value);
this.references = value;
fieldSetFlags()[2] = true;
return this;
}
/** Checks whether the 'references' field has been set */
public boolean hasReferences() {
return fieldSetFlags()[2];
}
/** Clears the value of the 'references' field */
public org.gel.models.report.avro.Diagnostic.Builder clearReferences() {
references = null;
fieldSetFlags()[2] = false;
return this;
}
/** Gets the value of the 'biomarkers' field */
public java.util.List getBiomarkers() {
return biomarkers;
}
/** Sets the value of the 'biomarkers' field */
public org.gel.models.report.avro.Diagnostic.Builder setBiomarkers(java.util.List value) {
validate(fields()[3], value);
this.biomarkers = value;
fieldSetFlags()[3] = true;
return this;
}
/** Checks whether the 'biomarkers' field has been set */
public boolean hasBiomarkers() {
return fieldSetFlags()[3];
}
/** Clears the value of the 'biomarkers' field */
public org.gel.models.report.avro.Diagnostic.Builder clearBiomarkers() {
biomarkers = null;
fieldSetFlags()[3] = false;
return this;
}
/** Gets the value of the 'conditions' field */
public java.util.List getConditions() {
return conditions;
}
/** Sets the value of the 'conditions' field */
public org.gel.models.report.avro.Diagnostic.Builder setConditions(java.util.List value) {
validate(fields()[4], value);
this.conditions = value;
fieldSetFlags()[4] = true;
return this;
}
/** Checks whether the 'conditions' field has been set */
public boolean hasConditions() {
return fieldSetFlags()[4];
}
/** Clears the value of the 'conditions' field */
public org.gel.models.report.avro.Diagnostic.Builder clearConditions() {
conditions = null;
fieldSetFlags()[4] = false;
return this;
}
/** Gets the value of the 'diagnosis' field */
public java.lang.String getDiagnosis() {
return diagnosis;
}
/** Sets the value of the 'diagnosis' field */
public org.gel.models.report.avro.Diagnostic.Builder setDiagnosis(java.lang.String value) {
validate(fields()[5], value);
this.diagnosis = value;
fieldSetFlags()[5] = true;
return this;
}
/** Checks whether the 'diagnosis' field has been set */
public boolean hasDiagnosis() {
return fieldSetFlags()[5];
}
/** Clears the value of the 'diagnosis' field */
public org.gel.models.report.avro.Diagnostic.Builder clearDiagnosis() {
diagnosis = null;
fieldSetFlags()[5] = false;
return this;
}
/** Gets the value of the 'diagnosisStatus' field */
public java.lang.String getDiagnosisStatus() {
return diagnosisStatus;
}
/** Sets the value of the 'diagnosisStatus' field */
public org.gel.models.report.avro.Diagnostic.Builder setDiagnosisStatus(java.lang.String value) {
validate(fields()[6], value);
this.diagnosisStatus = value;
fieldSetFlags()[6] = true;
return this;
}
/** Checks whether the 'diagnosisStatus' field has been set */
public boolean hasDiagnosisStatus() {
return fieldSetFlags()[6];
}
/** Clears the value of the 'diagnosisStatus' field */
public org.gel.models.report.avro.Diagnostic.Builder clearDiagnosisStatus() {
diagnosisStatus = null;
fieldSetFlags()[6] = false;
return this;
}
/** Gets the value of the 'otherCondition' field */
public java.lang.String getOtherCondition() {
return otherCondition;
}
/** Sets the value of the 'otherCondition' field */
public org.gel.models.report.avro.Diagnostic.Builder setOtherCondition(java.lang.String value) {
validate(fields()[7], value);
this.otherCondition = value;
fieldSetFlags()[7] = true;
return this;
}
/** Checks whether the 'otherCondition' field has been set */
public boolean hasOtherCondition() {
return fieldSetFlags()[7];
}
/** Clears the value of the 'otherCondition' field */
public org.gel.models.report.avro.Diagnostic.Builder clearOtherCondition() {
otherCondition = null;
fieldSetFlags()[7] = false;
return this;
}
/** Gets the value of the 'variantActionable' field */
public java.lang.Boolean getVariantActionable() {
return variantActionable;
}
/** Sets the value of the 'variantActionable' field */
public org.gel.models.report.avro.Diagnostic.Builder setVariantActionable(boolean value) {
validate(fields()[8], value);
this.variantActionable = value;
fieldSetFlags()[8] = true;
return this;
}
/** Checks whether the 'variantActionable' field has been set */
public boolean hasVariantActionable() {
return fieldSetFlags()[8];
}
/** Clears the value of the 'variantActionable' field */
public org.gel.models.report.avro.Diagnostic.Builder clearVariantActionable() {
fieldSetFlags()[8] = false;
return this;
}
@Override
public Diagnostic build() {
try {
Diagnostic record = new Diagnostic();
record.referenceUrl = fieldSetFlags()[0] ? this.referenceUrl : (java.lang.String) defaultValue(fields()[0]);
record.sources = fieldSetFlags()[1] ? this.sources : (java.util.List) defaultValue(fields()[1]);
record.references = fieldSetFlags()[2] ? this.references : (java.util.List) defaultValue(fields()[2]);
record.biomarkers = fieldSetFlags()[3] ? this.biomarkers : (java.util.List) defaultValue(fields()[3]);
record.conditions = fieldSetFlags()[4] ? this.conditions : (java.util.List) defaultValue(fields()[4]);
record.diagnosis = fieldSetFlags()[5] ? this.diagnosis : (java.lang.String) defaultValue(fields()[5]);
record.diagnosisStatus = fieldSetFlags()[6] ? this.diagnosisStatus : (java.lang.String) defaultValue(fields()[6]);
record.otherCondition = fieldSetFlags()[7] ? this.otherCondition : (java.lang.String) defaultValue(fields()[7]);
record.variantActionable = fieldSetFlags()[8] ? this.variantActionable : (java.lang.Boolean) defaultValue(fields()[8]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}
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