org.gel.models.report.avro.ParticipantInterpretationFlags Maven / Gradle / Ivy
/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.gel.models.report.avro;
@SuppressWarnings("all")
/** Interpretation flags at the participant level */
@org.apache.avro.specific.AvroGenerated
public class ParticipantInterpretationFlags extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"ParticipantInterpretationFlags\",\"namespace\":\"org.gel.models.report.avro\",\"doc\":\"Interpretation flags at the participant level\",\"fields\":[{\"name\":\"interpretationFlag\",\"type\":{\"type\":\"enum\",\"name\":\"InterpretationFlags\",\"doc\":\"Some flags relevant to the interpretation of a case\",\"symbols\":[\"mixed_chemistries\",\"mixedLab_preparation\",\"low_tumour_purity\",\"uniparental_isodisomy\",\"uniparental_heterodisomy\",\"unusual_karyotype\",\"high_cnv_count\",\"high_estimate_human_contamination_fraction\",\"mixed_recruiting_gmc\",\"suspected_mosaicism\",\"low_quality_sample\",\"ffpe_tumour_sample\",\"ff_nano_tumour_sample\",\"missing_values_for_proband_in_reported_variant\",\"reissued\",\"supplementary_report_errors\",\"internal_use_only\",\"high_priority\",\"suspected_increased_number_of_false_positive_heterozygous_loss_calls\",\"suspected_poor_quality_cnv_calls\",\"cnv_calls_assumed_xx_karyo\",\"cnv_calls_assumed_xy_karyo\",\"other\"]},\"doc\":\"The interpretation flag\"},{\"name\":\"additionalDescription\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"The description for the flag\"},{\"name\":\"SampleId\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"doc\":\"Sample Id fron which this flag was reported\"},{\"name\":\"participantId\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"Participant Id as appeared in the pedigree\"}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
/** The interpretation flag */
private org.gel.models.report.avro.InterpretationFlags interpretationFlag;
/** The description for the flag */
private java.lang.String additionalDescription;
/** Sample Id fron which this flag was reported */
private java.lang.String SampleId;
/** Participant Id as appeared in the pedigree */
private java.lang.String participantId;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public ParticipantInterpretationFlags() {}
/**
* All-args constructor.
*/
public ParticipantInterpretationFlags(org.gel.models.report.avro.InterpretationFlags interpretationFlag, java.lang.String additionalDescription, java.lang.String SampleId, java.lang.String participantId) {
this.interpretationFlag = interpretationFlag;
this.additionalDescription = additionalDescription;
this.SampleId = SampleId;
this.participantId = participantId;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return interpretationFlag;
case 1: return additionalDescription;
case 2: return SampleId;
case 3: return participantId;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: interpretationFlag = (org.gel.models.report.avro.InterpretationFlags)value$; break;
case 1: additionalDescription = (java.lang.String)value$; break;
case 2: SampleId = (java.lang.String)value$; break;
case 3: participantId = (java.lang.String)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'interpretationFlag' field.
* The interpretation flag */
public org.gel.models.report.avro.InterpretationFlags getInterpretationFlag() {
return interpretationFlag;
}
/**
* Sets the value of the 'interpretationFlag' field.
* The interpretation flag * @param value the value to set.
*/
public void setInterpretationFlag(org.gel.models.report.avro.InterpretationFlags value) {
this.interpretationFlag = value;
}
/**
* Gets the value of the 'additionalDescription' field.
* The description for the flag */
public java.lang.String getAdditionalDescription() {
return additionalDescription;
}
/**
* Sets the value of the 'additionalDescription' field.
* The description for the flag * @param value the value to set.
*/
public void setAdditionalDescription(java.lang.String value) {
this.additionalDescription = value;
}
/**
* Gets the value of the 'SampleId' field.
* Sample Id fron which this flag was reported */
public java.lang.String getSampleId() {
return SampleId;
}
/**
* Sets the value of the 'SampleId' field.
* Sample Id fron which this flag was reported * @param value the value to set.
*/
public void setSampleId(java.lang.String value) {
this.SampleId = value;
}
/**
* Gets the value of the 'participantId' field.
* Participant Id as appeared in the pedigree */
public java.lang.String getParticipantId() {
return participantId;
}
/**
* Sets the value of the 'participantId' field.
* Participant Id as appeared in the pedigree * @param value the value to set.
*/
public void setParticipantId(java.lang.String value) {
this.participantId = value;
}
/** Creates a new ParticipantInterpretationFlags RecordBuilder */
public static org.gel.models.report.avro.ParticipantInterpretationFlags.Builder newBuilder() {
return new org.gel.models.report.avro.ParticipantInterpretationFlags.Builder();
}
/** Creates a new ParticipantInterpretationFlags RecordBuilder by copying an existing Builder */
public static org.gel.models.report.avro.ParticipantInterpretationFlags.Builder newBuilder(org.gel.models.report.avro.ParticipantInterpretationFlags.Builder other) {
return new org.gel.models.report.avro.ParticipantInterpretationFlags.Builder(other);
}
/** Creates a new ParticipantInterpretationFlags RecordBuilder by copying an existing ParticipantInterpretationFlags instance */
public static org.gel.models.report.avro.ParticipantInterpretationFlags.Builder newBuilder(org.gel.models.report.avro.ParticipantInterpretationFlags other) {
return new org.gel.models.report.avro.ParticipantInterpretationFlags.Builder(other);
}
/**
* RecordBuilder for ParticipantInterpretationFlags instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private org.gel.models.report.avro.InterpretationFlags interpretationFlag;
private java.lang.String additionalDescription;
private java.lang.String SampleId;
private java.lang.String participantId;
/** Creates a new Builder */
private Builder() {
super(org.gel.models.report.avro.ParticipantInterpretationFlags.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.gel.models.report.avro.ParticipantInterpretationFlags.Builder other) {
super(other);
if (isValidValue(fields()[0], other.interpretationFlag)) {
this.interpretationFlag = data().deepCopy(fields()[0].schema(), other.interpretationFlag);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.additionalDescription)) {
this.additionalDescription = data().deepCopy(fields()[1].schema(), other.additionalDescription);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.SampleId)) {
this.SampleId = data().deepCopy(fields()[2].schema(), other.SampleId);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.participantId)) {
this.participantId = data().deepCopy(fields()[3].schema(), other.participantId);
fieldSetFlags()[3] = true;
}
}
/** Creates a Builder by copying an existing ParticipantInterpretationFlags instance */
private Builder(org.gel.models.report.avro.ParticipantInterpretationFlags other) {
super(org.gel.models.report.avro.ParticipantInterpretationFlags.SCHEMA$);
if (isValidValue(fields()[0], other.interpretationFlag)) {
this.interpretationFlag = data().deepCopy(fields()[0].schema(), other.interpretationFlag);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.additionalDescription)) {
this.additionalDescription = data().deepCopy(fields()[1].schema(), other.additionalDescription);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.SampleId)) {
this.SampleId = data().deepCopy(fields()[2].schema(), other.SampleId);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.participantId)) {
this.participantId = data().deepCopy(fields()[3].schema(), other.participantId);
fieldSetFlags()[3] = true;
}
}
/** Gets the value of the 'interpretationFlag' field */
public org.gel.models.report.avro.InterpretationFlags getInterpretationFlag() {
return interpretationFlag;
}
/** Sets the value of the 'interpretationFlag' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder setInterpretationFlag(org.gel.models.report.avro.InterpretationFlags value) {
validate(fields()[0], value);
this.interpretationFlag = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'interpretationFlag' field has been set */
public boolean hasInterpretationFlag() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'interpretationFlag' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder clearInterpretationFlag() {
interpretationFlag = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'additionalDescription' field */
public java.lang.String getAdditionalDescription() {
return additionalDescription;
}
/** Sets the value of the 'additionalDescription' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder setAdditionalDescription(java.lang.String value) {
validate(fields()[1], value);
this.additionalDescription = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'additionalDescription' field has been set */
public boolean hasAdditionalDescription() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'additionalDescription' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder clearAdditionalDescription() {
additionalDescription = null;
fieldSetFlags()[1] = false;
return this;
}
/** Gets the value of the 'SampleId' field */
public java.lang.String getSampleId() {
return SampleId;
}
/** Sets the value of the 'SampleId' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder setSampleId(java.lang.String value) {
validate(fields()[2], value);
this.SampleId = value;
fieldSetFlags()[2] = true;
return this;
}
/** Checks whether the 'SampleId' field has been set */
public boolean hasSampleId() {
return fieldSetFlags()[2];
}
/** Clears the value of the 'SampleId' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder clearSampleId() {
SampleId = null;
fieldSetFlags()[2] = false;
return this;
}
/** Gets the value of the 'participantId' field */
public java.lang.String getParticipantId() {
return participantId;
}
/** Sets the value of the 'participantId' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder setParticipantId(java.lang.String value) {
validate(fields()[3], value);
this.participantId = value;
fieldSetFlags()[3] = true;
return this;
}
/** Checks whether the 'participantId' field has been set */
public boolean hasParticipantId() {
return fieldSetFlags()[3];
}
/** Clears the value of the 'participantId' field */
public org.gel.models.report.avro.ParticipantInterpretationFlags.Builder clearParticipantId() {
participantId = null;
fieldSetFlags()[3] = false;
return this;
}
@Override
public ParticipantInterpretationFlags build() {
try {
ParticipantInterpretationFlags record = new ParticipantInterpretationFlags();
record.interpretationFlag = fieldSetFlags()[0] ? this.interpretationFlag : (org.gel.models.report.avro.InterpretationFlags) defaultValue(fields()[0]);
record.additionalDescription = fieldSetFlags()[1] ? this.additionalDescription : (java.lang.String) defaultValue(fields()[1]);
record.SampleId = fieldSetFlags()[2] ? this.SampleId : (java.lang.String) defaultValue(fields()[2]);
record.participantId = fieldSetFlags()[3] ? this.participantId : (java.lang.String) defaultValue(fields()[3]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}
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