org.gel.models.participant.avro.MatchedSamples Maven / Gradle / Ivy

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/**
 * Autogenerated by Avro
 * 
 * DO NOT EDIT DIRECTLY
 */
package org.gel.models.participant.avro;  
@SuppressWarnings("all")
/** This defines a pair of germline and tumor, this pair should/must be analyzed together */
@org.apache.avro.specific.AvroGenerated
public class MatchedSamples extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
  public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"MatchedSamples\",\"namespace\":\"org.gel.models.participant.avro\",\"doc\":\"This defines a pair of germline and tumor, this pair should/must be analyzed together\",\"fields\":[{\"name\":\"germlineSampleId\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"Sample identifier (e.g, LP00012645_5GH)) for the germline\"},{\"name\":\"tumourSampleId\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"Sample identifier (e.g, LP00012643_7JS)) for the tumor\"}]}");
  public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
  /** Sample identifier (e.g, LP00012645_5GH)) for the germline */
   private java.lang.String germlineSampleId;
  /** Sample identifier (e.g, LP00012643_7JS)) for the tumor */
   private java.lang.String tumourSampleId;

  /**
   * Default constructor.  Note that this does not initialize fields
   * to their default values from the schema.  If that is desired then
   * one should use newBuilder(). 
   */
  public MatchedSamples() {}

  /**
   * All-args constructor.
   */
  public MatchedSamples(java.lang.String germlineSampleId, java.lang.String tumourSampleId) {
    this.germlineSampleId = germlineSampleId;
    this.tumourSampleId = tumourSampleId;
  }

  public org.apache.avro.Schema getSchema() { return SCHEMA$; }
  // Used by DatumWriter.  Applications should not call. 
  public java.lang.Object get(int field$) {
    switch (field$) {
    case 0: return germlineSampleId;
    case 1: return tumourSampleId;
    default: throw new org.apache.avro.AvroRuntimeException("Bad index");
    }
  }
  // Used by DatumReader.  Applications should not call. 
  @SuppressWarnings(value="unchecked")
  public void put(int field$, java.lang.Object value$) {
    switch (field$) {
    case 0: germlineSampleId = (java.lang.String)value$; break;
    case 1: tumourSampleId = (java.lang.String)value$; break;
    default: throw new org.apache.avro.AvroRuntimeException("Bad index");
    }
  }

  /**
   * Gets the value of the 'germlineSampleId' field.
   * Sample identifier (e.g, LP00012645_5GH)) for the germline   */
  public java.lang.String getGermlineSampleId() {
    return germlineSampleId;
  }

  /**
   * Sets the value of the 'germlineSampleId' field.
   * Sample identifier (e.g, LP00012645_5GH)) for the germline   * @param value the value to set.
   */
  public void setGermlineSampleId(java.lang.String value) {
    this.germlineSampleId = value;
  }

  /**
   * Gets the value of the 'tumourSampleId' field.
   * Sample identifier (e.g, LP00012643_7JS)) for the tumor   */
  public java.lang.String getTumourSampleId() {
    return tumourSampleId;
  }

  /**
   * Sets the value of the 'tumourSampleId' field.
   * Sample identifier (e.g, LP00012643_7JS)) for the tumor   * @param value the value to set.
   */
  public void setTumourSampleId(java.lang.String value) {
    this.tumourSampleId = value;
  }

  /** Creates a new MatchedSamples RecordBuilder */
  public static org.gel.models.participant.avro.MatchedSamples.Builder newBuilder() {
    return new org.gel.models.participant.avro.MatchedSamples.Builder();
  }
  
  /** Creates a new MatchedSamples RecordBuilder by copying an existing Builder */
  public static org.gel.models.participant.avro.MatchedSamples.Builder newBuilder(org.gel.models.participant.avro.MatchedSamples.Builder other) {
    return new org.gel.models.participant.avro.MatchedSamples.Builder(other);
  }
  
  /** Creates a new MatchedSamples RecordBuilder by copying an existing MatchedSamples instance */
  public static org.gel.models.participant.avro.MatchedSamples.Builder newBuilder(org.gel.models.participant.avro.MatchedSamples other) {
    return new org.gel.models.participant.avro.MatchedSamples.Builder(other);
  }
  
  /**
   * RecordBuilder for MatchedSamples instances.
   */
  public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
    implements org.apache.avro.data.RecordBuilder {

    private java.lang.String germlineSampleId;
    private java.lang.String tumourSampleId;

    /** Creates a new Builder */
    private Builder() {
      super(org.gel.models.participant.avro.MatchedSamples.SCHEMA$);
    }
    
    /** Creates a Builder by copying an existing Builder */
    private Builder(org.gel.models.participant.avro.MatchedSamples.Builder other) {
      super(other);
      if (isValidValue(fields()[0], other.germlineSampleId)) {
        this.germlineSampleId = data().deepCopy(fields()[0].schema(), other.germlineSampleId);
        fieldSetFlags()[0] = true;
      }
      if (isValidValue(fields()[1], other.tumourSampleId)) {
        this.tumourSampleId = data().deepCopy(fields()[1].schema(), other.tumourSampleId);
        fieldSetFlags()[1] = true;
      }
    }
    
    /** Creates a Builder by copying an existing MatchedSamples instance */
    private Builder(org.gel.models.participant.avro.MatchedSamples other) {
            super(org.gel.models.participant.avro.MatchedSamples.SCHEMA$);
      if (isValidValue(fields()[0], other.germlineSampleId)) {
        this.germlineSampleId = data().deepCopy(fields()[0].schema(), other.germlineSampleId);
        fieldSetFlags()[0] = true;
      }
      if (isValidValue(fields()[1], other.tumourSampleId)) {
        this.tumourSampleId = data().deepCopy(fields()[1].schema(), other.tumourSampleId);
        fieldSetFlags()[1] = true;
      }
    }

    /** Gets the value of the 'germlineSampleId' field */
    public java.lang.String getGermlineSampleId() {
      return germlineSampleId;
    }
    
    /** Sets the value of the 'germlineSampleId' field */
    public org.gel.models.participant.avro.MatchedSamples.Builder setGermlineSampleId(java.lang.String value) {
      validate(fields()[0], value);
      this.germlineSampleId = value;
      fieldSetFlags()[0] = true;
      return this; 
    }
    
    /** Checks whether the 'germlineSampleId' field has been set */
    public boolean hasGermlineSampleId() {
      return fieldSetFlags()[0];
    }
    
    /** Clears the value of the 'germlineSampleId' field */
    public org.gel.models.participant.avro.MatchedSamples.Builder clearGermlineSampleId() {
      germlineSampleId = null;
      fieldSetFlags()[0] = false;
      return this;
    }

    /** Gets the value of the 'tumourSampleId' field */
    public java.lang.String getTumourSampleId() {
      return tumourSampleId;
    }
    
    /** Sets the value of the 'tumourSampleId' field */
    public org.gel.models.participant.avro.MatchedSamples.Builder setTumourSampleId(java.lang.String value) {
      validate(fields()[1], value);
      this.tumourSampleId = value;
      fieldSetFlags()[1] = true;
      return this; 
    }
    
    /** Checks whether the 'tumourSampleId' field has been set */
    public boolean hasTumourSampleId() {
      return fieldSetFlags()[1];
    }
    
    /** Clears the value of the 'tumourSampleId' field */
    public org.gel.models.participant.avro.MatchedSamples.Builder clearTumourSampleId() {
      tumourSampleId = null;
      fieldSetFlags()[1] = false;
      return this;
    }

    @Override
    public MatchedSamples build() {
      try {
        MatchedSamples record = new MatchedSamples();
        record.germlineSampleId = fieldSetFlags()[0] ? this.germlineSampleId : (java.lang.String) defaultValue(fields()[0]);
        record.tumourSampleId = fieldSetFlags()[1] ? this.tumourSampleId : (java.lang.String) defaultValue(fields()[1]);
        return record;
      } catch (Exception e) {
        throw new org.apache.avro.AvroRuntimeException(e);
      }
    }
  }
}