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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.gel.models.report.avro;
@SuppressWarnings("all")
/** Evidences as defined in AMP guidelines, they are composed by a evidence type (first column in the evidence table of
the guidlines) and a assessment of the evicence, this last one will define the streght of the evidence, supporting
the variant to be classified as TierI-IV */
@org.apache.avro.specific.AvroGenerated
public class AmpEvidence extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"AmpEvidence\",\"namespace\":\"org.gel.models.report.avro\",\"doc\":\"Evidences as defined in AMP guidelines, they are composed by a evidence type (first column in the evidence table of\\n the guidlines) and a assessment of the evicence, this last one will define the streght of the evidence, supporting\\n the variant to be classified as TierI-IV\",\"fields\":[{\"name\":\"type\",\"type\":{\"type\":\"enum\",\"name\":\"AmpEvidenceType\",\"doc\":\"Type of evidence in the AMP guideline\",\"symbols\":[\"mutation_type\",\"therapies\",\"variant_frequencies\",\"potential_germline\",\"population_database_presence\",\"germline_database_presence\",\"somatic_database_presence\",\"impact_predictive_software\",\"pathway_involvement\",\"publications\"]},\"doc\":\"AMP evidence type according to Guidlines, i.e germline_database_presence\"},{\"name\":\"evidenceAssessment\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"doc\":\"Assessment for AMP evidence, i.e Present in ClinVar\"}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
/** AMP evidence type according to Guidlines, i.e germline_database_presence */
private org.gel.models.report.avro.AmpEvidenceType type;
/** Assessment for AMP evidence, i.e Present in ClinVar */
private java.lang.String evidenceAssessment;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public AmpEvidence() {}
/**
* All-args constructor.
*/
public AmpEvidence(org.gel.models.report.avro.AmpEvidenceType type, java.lang.String evidenceAssessment) {
this.type = type;
this.evidenceAssessment = evidenceAssessment;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return type;
case 1: return evidenceAssessment;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: type = (org.gel.models.report.avro.AmpEvidenceType)value$; break;
case 1: evidenceAssessment = (java.lang.String)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'type' field.
* AMP evidence type according to Guidlines, i.e germline_database_presence */
public org.gel.models.report.avro.AmpEvidenceType getType() {
return type;
}
/**
* Sets the value of the 'type' field.
* AMP evidence type according to Guidlines, i.e germline_database_presence * @param value the value to set.
*/
public void setType(org.gel.models.report.avro.AmpEvidenceType value) {
this.type = value;
}
/**
* Gets the value of the 'evidenceAssessment' field.
* Assessment for AMP evidence, i.e Present in ClinVar */
public java.lang.String getEvidenceAssessment() {
return evidenceAssessment;
}
/**
* Sets the value of the 'evidenceAssessment' field.
* Assessment for AMP evidence, i.e Present in ClinVar * @param value the value to set.
*/
public void setEvidenceAssessment(java.lang.String value) {
this.evidenceAssessment = value;
}
/** Creates a new AmpEvidence RecordBuilder */
public static org.gel.models.report.avro.AmpEvidence.Builder newBuilder() {
return new org.gel.models.report.avro.AmpEvidence.Builder();
}
/** Creates a new AmpEvidence RecordBuilder by copying an existing Builder */
public static org.gel.models.report.avro.AmpEvidence.Builder newBuilder(org.gel.models.report.avro.AmpEvidence.Builder other) {
return new org.gel.models.report.avro.AmpEvidence.Builder(other);
}
/** Creates a new AmpEvidence RecordBuilder by copying an existing AmpEvidence instance */
public static org.gel.models.report.avro.AmpEvidence.Builder newBuilder(org.gel.models.report.avro.AmpEvidence other) {
return new org.gel.models.report.avro.AmpEvidence.Builder(other);
}
/**
* RecordBuilder for AmpEvidence instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private org.gel.models.report.avro.AmpEvidenceType type;
private java.lang.String evidenceAssessment;
/** Creates a new Builder */
private Builder() {
super(org.gel.models.report.avro.AmpEvidence.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.gel.models.report.avro.AmpEvidence.Builder other) {
super(other);
if (isValidValue(fields()[0], other.type)) {
this.type = data().deepCopy(fields()[0].schema(), other.type);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.evidenceAssessment)) {
this.evidenceAssessment = data().deepCopy(fields()[1].schema(), other.evidenceAssessment);
fieldSetFlags()[1] = true;
}
}
/** Creates a Builder by copying an existing AmpEvidence instance */
private Builder(org.gel.models.report.avro.AmpEvidence other) {
super(org.gel.models.report.avro.AmpEvidence.SCHEMA$);
if (isValidValue(fields()[0], other.type)) {
this.type = data().deepCopy(fields()[0].schema(), other.type);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.evidenceAssessment)) {
this.evidenceAssessment = data().deepCopy(fields()[1].schema(), other.evidenceAssessment);
fieldSetFlags()[1] = true;
}
}
/** Gets the value of the 'type' field */
public org.gel.models.report.avro.AmpEvidenceType getType() {
return type;
}
/** Sets the value of the 'type' field */
public org.gel.models.report.avro.AmpEvidence.Builder setType(org.gel.models.report.avro.AmpEvidenceType value) {
validate(fields()[0], value);
this.type = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'type' field has been set */
public boolean hasType() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'type' field */
public org.gel.models.report.avro.AmpEvidence.Builder clearType() {
type = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'evidenceAssessment' field */
public java.lang.String getEvidenceAssessment() {
return evidenceAssessment;
}
/** Sets the value of the 'evidenceAssessment' field */
public org.gel.models.report.avro.AmpEvidence.Builder setEvidenceAssessment(java.lang.String value) {
validate(fields()[1], value);
this.evidenceAssessment = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'evidenceAssessment' field has been set */
public boolean hasEvidenceAssessment() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'evidenceAssessment' field */
public org.gel.models.report.avro.AmpEvidence.Builder clearEvidenceAssessment() {
evidenceAssessment = null;
fieldSetFlags()[1] = false;
return this;
}
@Override
public AmpEvidence build() {
try {
AmpEvidence record = new AmpEvidence();
record.type = fieldSetFlags()[0] ? this.type : (org.gel.models.report.avro.AmpEvidenceType) defaultValue(fields()[0]);
record.evidenceAssessment = fieldSetFlags()[1] ? this.evidenceAssessment : (java.lang.String) defaultValue(fields()[1]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}
