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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.gel.models.report.avro;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class VariantIdentifiers extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"VariantIdentifiers\",\"namespace\":\"org.gel.models.report.avro\",\"fields\":[{\"name\":\"dbSnpId\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}],\"doc\":\"Variant identifier in dbSNP\"},{\"name\":\"cosmicIds\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}],\"doc\":\"Variant identifier in Cosmic\"},{\"name\":\"clinVarIds\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}],\"doc\":\"Variant identifier in ClinVar\"},{\"name\":\"otherIds\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"record\",\"name\":\"Identifier\",\"fields\":[{\"name\":\"source\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"doc\":\"Source i.e, esenmbl\"},{\"name\":\"identifier\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"doc\":\"identifier\"}]}}]}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
/** Variant identifier in dbSNP */
private java.lang.String dbSnpId;
/** Variant identifier in Cosmic */
private java.util.List cosmicIds;
/** Variant identifier in ClinVar */
private java.util.List clinVarIds;
private java.util.List otherIds;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public VariantIdentifiers() {}
/**
* All-args constructor.
*/
public VariantIdentifiers(java.lang.String dbSnpId, java.util.List cosmicIds, java.util.List clinVarIds, java.util.List otherIds) {
this.dbSnpId = dbSnpId;
this.cosmicIds = cosmicIds;
this.clinVarIds = clinVarIds;
this.otherIds = otherIds;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return dbSnpId;
case 1: return cosmicIds;
case 2: return clinVarIds;
case 3: return otherIds;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: dbSnpId = (java.lang.String)value$; break;
case 1: cosmicIds = (java.util.List)value$; break;
case 2: clinVarIds = (java.util.List)value$; break;
case 3: otherIds = (java.util.List)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'dbSnpId' field.
* Variant identifier in dbSNP */
public java.lang.String getDbSnpId() {
return dbSnpId;
}
/**
* Sets the value of the 'dbSnpId' field.
* Variant identifier in dbSNP * @param value the value to set.
*/
public void setDbSnpId(java.lang.String value) {
this.dbSnpId = value;
}
/**
* Gets the value of the 'cosmicIds' field.
* Variant identifier in Cosmic */
public java.util.List getCosmicIds() {
return cosmicIds;
}
/**
* Sets the value of the 'cosmicIds' field.
* Variant identifier in Cosmic * @param value the value to set.
*/
public void setCosmicIds(java.util.List value) {
this.cosmicIds = value;
}
/**
* Gets the value of the 'clinVarIds' field.
* Variant identifier in ClinVar */
public java.util.List getClinVarIds() {
return clinVarIds;
}
/**
* Sets the value of the 'clinVarIds' field.
* Variant identifier in ClinVar * @param value the value to set.
*/
public void setClinVarIds(java.util.List value) {
this.clinVarIds = value;
}
/**
* Gets the value of the 'otherIds' field.
*/
public java.util.List getOtherIds() {
return otherIds;
}
/**
* Sets the value of the 'otherIds' field.
* @param value the value to set.
*/
public void setOtherIds(java.util.List value) {
this.otherIds = value;
}
/** Creates a new VariantIdentifiers RecordBuilder */
public static org.gel.models.report.avro.VariantIdentifiers.Builder newBuilder() {
return new org.gel.models.report.avro.VariantIdentifiers.Builder();
}
/** Creates a new VariantIdentifiers RecordBuilder by copying an existing Builder */
public static org.gel.models.report.avro.VariantIdentifiers.Builder newBuilder(org.gel.models.report.avro.VariantIdentifiers.Builder other) {
return new org.gel.models.report.avro.VariantIdentifiers.Builder(other);
}
/** Creates a new VariantIdentifiers RecordBuilder by copying an existing VariantIdentifiers instance */
public static org.gel.models.report.avro.VariantIdentifiers.Builder newBuilder(org.gel.models.report.avro.VariantIdentifiers other) {
return new org.gel.models.report.avro.VariantIdentifiers.Builder(other);
}
/**
* RecordBuilder for VariantIdentifiers instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String dbSnpId;
private java.util.List cosmicIds;
private java.util.List clinVarIds;
private java.util.List otherIds;
/** Creates a new Builder */
private Builder() {
super(org.gel.models.report.avro.VariantIdentifiers.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.gel.models.report.avro.VariantIdentifiers.Builder other) {
super(other);
if (isValidValue(fields()[0], other.dbSnpId)) {
this.dbSnpId = data().deepCopy(fields()[0].schema(), other.dbSnpId);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.cosmicIds)) {
this.cosmicIds = data().deepCopy(fields()[1].schema(), other.cosmicIds);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.clinVarIds)) {
this.clinVarIds = data().deepCopy(fields()[2].schema(), other.clinVarIds);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.otherIds)) {
this.otherIds = data().deepCopy(fields()[3].schema(), other.otherIds);
fieldSetFlags()[3] = true;
}
}
/** Creates a Builder by copying an existing VariantIdentifiers instance */
private Builder(org.gel.models.report.avro.VariantIdentifiers other) {
super(org.gel.models.report.avro.VariantIdentifiers.SCHEMA$);
if (isValidValue(fields()[0], other.dbSnpId)) {
this.dbSnpId = data().deepCopy(fields()[0].schema(), other.dbSnpId);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.cosmicIds)) {
this.cosmicIds = data().deepCopy(fields()[1].schema(), other.cosmicIds);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.clinVarIds)) {
this.clinVarIds = data().deepCopy(fields()[2].schema(), other.clinVarIds);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.otherIds)) {
this.otherIds = data().deepCopy(fields()[3].schema(), other.otherIds);
fieldSetFlags()[3] = true;
}
}
/** Gets the value of the 'dbSnpId' field */
public java.lang.String getDbSnpId() {
return dbSnpId;
}
/** Sets the value of the 'dbSnpId' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder setDbSnpId(java.lang.String value) {
validate(fields()[0], value);
this.dbSnpId = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'dbSnpId' field has been set */
public boolean hasDbSnpId() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'dbSnpId' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder clearDbSnpId() {
dbSnpId = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'cosmicIds' field */
public java.util.List getCosmicIds() {
return cosmicIds;
}
/** Sets the value of the 'cosmicIds' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder setCosmicIds(java.util.List value) {
validate(fields()[1], value);
this.cosmicIds = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'cosmicIds' field has been set */
public boolean hasCosmicIds() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'cosmicIds' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder clearCosmicIds() {
cosmicIds = null;
fieldSetFlags()[1] = false;
return this;
}
/** Gets the value of the 'clinVarIds' field */
public java.util.List getClinVarIds() {
return clinVarIds;
}
/** Sets the value of the 'clinVarIds' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder setClinVarIds(java.util.List value) {
validate(fields()[2], value);
this.clinVarIds = value;
fieldSetFlags()[2] = true;
return this;
}
/** Checks whether the 'clinVarIds' field has been set */
public boolean hasClinVarIds() {
return fieldSetFlags()[2];
}
/** Clears the value of the 'clinVarIds' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder clearClinVarIds() {
clinVarIds = null;
fieldSetFlags()[2] = false;
return this;
}
/** Gets the value of the 'otherIds' field */
public java.util.List getOtherIds() {
return otherIds;
}
/** Sets the value of the 'otherIds' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder setOtherIds(java.util.List value) {
validate(fields()[3], value);
this.otherIds = value;
fieldSetFlags()[3] = true;
return this;
}
/** Checks whether the 'otherIds' field has been set */
public boolean hasOtherIds() {
return fieldSetFlags()[3];
}
/** Clears the value of the 'otherIds' field */
public org.gel.models.report.avro.VariantIdentifiers.Builder clearOtherIds() {
otherIds = null;
fieldSetFlags()[3] = false;
return this;
}
@Override
public VariantIdentifiers build() {
try {
VariantIdentifiers record = new VariantIdentifiers();
record.dbSnpId = fieldSetFlags()[0] ? this.dbSnpId : (java.lang.String) defaultValue(fields()[0]);
record.cosmicIds = fieldSetFlags()[1] ? this.cosmicIds : (java.util.List) defaultValue(fields()[1]);
record.clinVarIds = fieldSetFlags()[2] ? this.clinVarIds : (java.util.List) defaultValue(fields()[2]);
record.otherIds = fieldSetFlags()[3] ? this.otherIds : (java.util.List) defaultValue(fields()[3]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}
