org.opencb.biodata.models.variant.avro.Expression Maven / Gradle / Ivy
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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.opencb.biodata.models.variant.avro;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class Expression extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"Expression\",\"namespace\":\"org.opencb.biodata.models.variant.avro\",\"fields\":[{\"name\":\"geneName\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"transcriptId\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"experimentalFactor\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"factorValue\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"experimentId\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"technologyPlatform\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"expression\",\"type\":[\"null\",{\"type\":\"enum\",\"name\":\"ExpressionCall\",\"symbols\":[\"UP\",\"DOWN\"],\"javaAnnotation\":\"Deprecated\"}]},{\"name\":\"pvalue\",\"type\":[\"null\",\"float\"]}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
private java.lang.String geneName;
private java.lang.String transcriptId;
private java.lang.String experimentalFactor;
private java.lang.String factorValue;
private java.lang.String experimentId;
private java.lang.String technologyPlatform;
private org.opencb.biodata.models.variant.avro.ExpressionCall expression;
private java.lang.Float pvalue;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public Expression() {}
/**
* All-args constructor.
*/
public Expression(java.lang.String geneName, java.lang.String transcriptId, java.lang.String experimentalFactor, java.lang.String factorValue, java.lang.String experimentId, java.lang.String technologyPlatform, org.opencb.biodata.models.variant.avro.ExpressionCall expression, java.lang.Float pvalue) {
this.geneName = geneName;
this.transcriptId = transcriptId;
this.experimentalFactor = experimentalFactor;
this.factorValue = factorValue;
this.experimentId = experimentId;
this.technologyPlatform = technologyPlatform;
this.expression = expression;
this.pvalue = pvalue;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return geneName;
case 1: return transcriptId;
case 2: return experimentalFactor;
case 3: return factorValue;
case 4: return experimentId;
case 5: return technologyPlatform;
case 6: return expression;
case 7: return pvalue;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: geneName = (java.lang.String)value$; break;
case 1: transcriptId = (java.lang.String)value$; break;
case 2: experimentalFactor = (java.lang.String)value$; break;
case 3: factorValue = (java.lang.String)value$; break;
case 4: experimentId = (java.lang.String)value$; break;
case 5: technologyPlatform = (java.lang.String)value$; break;
case 6: expression = (org.opencb.biodata.models.variant.avro.ExpressionCall)value$; break;
case 7: pvalue = (java.lang.Float)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'geneName' field.
*/
public java.lang.String getGeneName() {
return geneName;
}
/**
* Sets the value of the 'geneName' field.
* @param value the value to set.
*/
public void setGeneName(java.lang.String value) {
this.geneName = value;
}
/**
* Gets the value of the 'transcriptId' field.
*/
public java.lang.String getTranscriptId() {
return transcriptId;
}
/**
* Sets the value of the 'transcriptId' field.
* @param value the value to set.
*/
public void setTranscriptId(java.lang.String value) {
this.transcriptId = value;
}
/**
* Gets the value of the 'experimentalFactor' field.
*/
public java.lang.String getExperimentalFactor() {
return experimentalFactor;
}
/**
* Sets the value of the 'experimentalFactor' field.
* @param value the value to set.
*/
public void setExperimentalFactor(java.lang.String value) {
this.experimentalFactor = value;
}
/**
* Gets the value of the 'factorValue' field.
*/
public java.lang.String getFactorValue() {
return factorValue;
}
/**
* Sets the value of the 'factorValue' field.
* @param value the value to set.
*/
public void setFactorValue(java.lang.String value) {
this.factorValue = value;
}
/**
* Gets the value of the 'experimentId' field.
*/
public java.lang.String getExperimentId() {
return experimentId;
}
/**
* Sets the value of the 'experimentId' field.
* @param value the value to set.
*/
public void setExperimentId(java.lang.String value) {
this.experimentId = value;
}
/**
* Gets the value of the 'technologyPlatform' field.
*/
public java.lang.String getTechnologyPlatform() {
return technologyPlatform;
}
/**
* Sets the value of the 'technologyPlatform' field.
* @param value the value to set.
*/
public void setTechnologyPlatform(java.lang.String value) {
this.technologyPlatform = value;
}
/**
* Gets the value of the 'expression' field.
*/
public org.opencb.biodata.models.variant.avro.ExpressionCall getExpression() {
return expression;
}
/**
* Sets the value of the 'expression' field.
* @param value the value to set.
*/
public void setExpression(org.opencb.biodata.models.variant.avro.ExpressionCall value) {
this.expression = value;
}
/**
* Gets the value of the 'pvalue' field.
*/
public java.lang.Float getPvalue() {
return pvalue;
}
/**
* Sets the value of the 'pvalue' field.
* @param value the value to set.
*/
public void setPvalue(java.lang.Float value) {
this.pvalue = value;
}
/** Creates a new Expression RecordBuilder */
public static org.opencb.biodata.models.variant.avro.Expression.Builder newBuilder() {
return new org.opencb.biodata.models.variant.avro.Expression.Builder();
}
/** Creates a new Expression RecordBuilder by copying an existing Builder */
public static org.opencb.biodata.models.variant.avro.Expression.Builder newBuilder(org.opencb.biodata.models.variant.avro.Expression.Builder other) {
return new org.opencb.biodata.models.variant.avro.Expression.Builder(other);
}
/** Creates a new Expression RecordBuilder by copying an existing Expression instance */
public static org.opencb.biodata.models.variant.avro.Expression.Builder newBuilder(org.opencb.biodata.models.variant.avro.Expression other) {
return new org.opencb.biodata.models.variant.avro.Expression.Builder(other);
}
/**
* RecordBuilder for Expression instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String geneName;
private java.lang.String transcriptId;
private java.lang.String experimentalFactor;
private java.lang.String factorValue;
private java.lang.String experimentId;
private java.lang.String technologyPlatform;
private org.opencb.biodata.models.variant.avro.ExpressionCall expression;
private java.lang.Float pvalue;
/** Creates a new Builder */
private Builder() {
super(org.opencb.biodata.models.variant.avro.Expression.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.opencb.biodata.models.variant.avro.Expression.Builder other) {
super(other);
if (isValidValue(fields()[0], other.geneName)) {
this.geneName = data().deepCopy(fields()[0].schema(), other.geneName);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.transcriptId)) {
this.transcriptId = data().deepCopy(fields()[1].schema(), other.transcriptId);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.experimentalFactor)) {
this.experimentalFactor = data().deepCopy(fields()[2].schema(), other.experimentalFactor);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.factorValue)) {
this.factorValue = data().deepCopy(fields()[3].schema(), other.factorValue);
fieldSetFlags()[3] = true;
}
if (isValidValue(fields()[4], other.experimentId)) {
this.experimentId = data().deepCopy(fields()[4].schema(), other.experimentId);
fieldSetFlags()[4] = true;
}
if (isValidValue(fields()[5], other.technologyPlatform)) {
this.technologyPlatform = data().deepCopy(fields()[5].schema(), other.technologyPlatform);
fieldSetFlags()[5] = true;
}
if (isValidValue(fields()[6], other.expression)) {
this.expression = data().deepCopy(fields()[6].schema(), other.expression);
fieldSetFlags()[6] = true;
}
if (isValidValue(fields()[7], other.pvalue)) {
this.pvalue = data().deepCopy(fields()[7].schema(), other.pvalue);
fieldSetFlags()[7] = true;
}
}
/** Creates a Builder by copying an existing Expression instance */
private Builder(org.opencb.biodata.models.variant.avro.Expression other) {
super(org.opencb.biodata.models.variant.avro.Expression.SCHEMA$);
if (isValidValue(fields()[0], other.geneName)) {
this.geneName = data().deepCopy(fields()[0].schema(), other.geneName);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.transcriptId)) {
this.transcriptId = data().deepCopy(fields()[1].schema(), other.transcriptId);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.experimentalFactor)) {
this.experimentalFactor = data().deepCopy(fields()[2].schema(), other.experimentalFactor);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.factorValue)) {
this.factorValue = data().deepCopy(fields()[3].schema(), other.factorValue);
fieldSetFlags()[3] = true;
}
if (isValidValue(fields()[4], other.experimentId)) {
this.experimentId = data().deepCopy(fields()[4].schema(), other.experimentId);
fieldSetFlags()[4] = true;
}
if (isValidValue(fields()[5], other.technologyPlatform)) {
this.technologyPlatform = data().deepCopy(fields()[5].schema(), other.technologyPlatform);
fieldSetFlags()[5] = true;
}
if (isValidValue(fields()[6], other.expression)) {
this.expression = data().deepCopy(fields()[6].schema(), other.expression);
fieldSetFlags()[6] = true;
}
if (isValidValue(fields()[7], other.pvalue)) {
this.pvalue = data().deepCopy(fields()[7].schema(), other.pvalue);
fieldSetFlags()[7] = true;
}
}
/** Gets the value of the 'geneName' field */
public java.lang.String getGeneName() {
return geneName;
}
/** Sets the value of the 'geneName' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setGeneName(java.lang.String value) {
validate(fields()[0], value);
this.geneName = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'geneName' field has been set */
public boolean hasGeneName() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'geneName' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearGeneName() {
geneName = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'transcriptId' field */
public java.lang.String getTranscriptId() {
return transcriptId;
}
/** Sets the value of the 'transcriptId' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setTranscriptId(java.lang.String value) {
validate(fields()[1], value);
this.transcriptId = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'transcriptId' field has been set */
public boolean hasTranscriptId() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'transcriptId' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearTranscriptId() {
transcriptId = null;
fieldSetFlags()[1] = false;
return this;
}
/** Gets the value of the 'experimentalFactor' field */
public java.lang.String getExperimentalFactor() {
return experimentalFactor;
}
/** Sets the value of the 'experimentalFactor' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setExperimentalFactor(java.lang.String value) {
validate(fields()[2], value);
this.experimentalFactor = value;
fieldSetFlags()[2] = true;
return this;
}
/** Checks whether the 'experimentalFactor' field has been set */
public boolean hasExperimentalFactor() {
return fieldSetFlags()[2];
}
/** Clears the value of the 'experimentalFactor' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearExperimentalFactor() {
experimentalFactor = null;
fieldSetFlags()[2] = false;
return this;
}
/** Gets the value of the 'factorValue' field */
public java.lang.String getFactorValue() {
return factorValue;
}
/** Sets the value of the 'factorValue' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setFactorValue(java.lang.String value) {
validate(fields()[3], value);
this.factorValue = value;
fieldSetFlags()[3] = true;
return this;
}
/** Checks whether the 'factorValue' field has been set */
public boolean hasFactorValue() {
return fieldSetFlags()[3];
}
/** Clears the value of the 'factorValue' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearFactorValue() {
factorValue = null;
fieldSetFlags()[3] = false;
return this;
}
/** Gets the value of the 'experimentId' field */
public java.lang.String getExperimentId() {
return experimentId;
}
/** Sets the value of the 'experimentId' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setExperimentId(java.lang.String value) {
validate(fields()[4], value);
this.experimentId = value;
fieldSetFlags()[4] = true;
return this;
}
/** Checks whether the 'experimentId' field has been set */
public boolean hasExperimentId() {
return fieldSetFlags()[4];
}
/** Clears the value of the 'experimentId' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearExperimentId() {
experimentId = null;
fieldSetFlags()[4] = false;
return this;
}
/** Gets the value of the 'technologyPlatform' field */
public java.lang.String getTechnologyPlatform() {
return technologyPlatform;
}
/** Sets the value of the 'technologyPlatform' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setTechnologyPlatform(java.lang.String value) {
validate(fields()[5], value);
this.technologyPlatform = value;
fieldSetFlags()[5] = true;
return this;
}
/** Checks whether the 'technologyPlatform' field has been set */
public boolean hasTechnologyPlatform() {
return fieldSetFlags()[5];
}
/** Clears the value of the 'technologyPlatform' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearTechnologyPlatform() {
technologyPlatform = null;
fieldSetFlags()[5] = false;
return this;
}
/** Gets the value of the 'expression' field */
public org.opencb.biodata.models.variant.avro.ExpressionCall getExpression() {
return expression;
}
/** Sets the value of the 'expression' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setExpression(org.opencb.biodata.models.variant.avro.ExpressionCall value) {
validate(fields()[6], value);
this.expression = value;
fieldSetFlags()[6] = true;
return this;
}
/** Checks whether the 'expression' field has been set */
public boolean hasExpression() {
return fieldSetFlags()[6];
}
/** Clears the value of the 'expression' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearExpression() {
expression = null;
fieldSetFlags()[6] = false;
return this;
}
/** Gets the value of the 'pvalue' field */
public java.lang.Float getPvalue() {
return pvalue;
}
/** Sets the value of the 'pvalue' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder setPvalue(java.lang.Float value) {
validate(fields()[7], value);
this.pvalue = value;
fieldSetFlags()[7] = true;
return this;
}
/** Checks whether the 'pvalue' field has been set */
public boolean hasPvalue() {
return fieldSetFlags()[7];
}
/** Clears the value of the 'pvalue' field */
public org.opencb.biodata.models.variant.avro.Expression.Builder clearPvalue() {
pvalue = null;
fieldSetFlags()[7] = false;
return this;
}
@Override
public Expression build() {
try {
Expression record = new Expression();
record.geneName = fieldSetFlags()[0] ? this.geneName : (java.lang.String) defaultValue(fields()[0]);
record.transcriptId = fieldSetFlags()[1] ? this.transcriptId : (java.lang.String) defaultValue(fields()[1]);
record.experimentalFactor = fieldSetFlags()[2] ? this.experimentalFactor : (java.lang.String) defaultValue(fields()[2]);
record.factorValue = fieldSetFlags()[3] ? this.factorValue : (java.lang.String) defaultValue(fields()[3]);
record.experimentId = fieldSetFlags()[4] ? this.experimentId : (java.lang.String) defaultValue(fields()[4]);
record.technologyPlatform = fieldSetFlags()[5] ? this.technologyPlatform : (java.lang.String) defaultValue(fields()[5]);
record.expression = fieldSetFlags()[6] ? this.expression : (org.opencb.biodata.models.variant.avro.ExpressionCall) defaultValue(fields()[6]);
record.pvalue = fieldSetFlags()[7] ? this.pvalue : (java.lang.Float) defaultValue(fields()[7]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}