org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait Maven / Gradle / Ivy
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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.opencb.biodata.models.variant.avro;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class GwasAssociationStudyTrait extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"GwasAssociationStudyTrait\",\"namespace\":\"org.opencb.biodata.models.variant.avro\",\"fields\":[{\"name\":\"diseaseTrait\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"strongestSnpRiskAllele\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}]},{\"name\":\"ontologies\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"record\",\"name\":\"OntologyTermAnnotation\",\"fields\":[{\"name\":\"id\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"name\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"description\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"source\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"url\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"attributes\",\"type\":[\"null\",{\"type\":\"map\",\"values\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"avro.java.string\":\"String\"}]}]}}]},{\"name\":\"scores\",\"type\":[\"null\",{\"type\":\"array\",\"items\":{\"type\":\"record\",\"name\":\"GwasAssociationStudyTraitScores\",\"fields\":[{\"name\":\"pValue\",\"type\":[\"null\",\"double\"]},{\"name\":\"pValueMlog\",\"type\":[\"null\",\"double\"]},{\"name\":\"pValueText\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"orBeta\",\"type\":[\"null\",\"double\"]},{\"name\":\"percentCI\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]}]}}]}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
private java.lang.String diseaseTrait;
private java.util.List strongestSnpRiskAllele;
private java.util.List ontologies;
private java.util.List scores;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public GwasAssociationStudyTrait() {}
/**
* All-args constructor.
*/
public GwasAssociationStudyTrait(java.lang.String diseaseTrait, java.util.List strongestSnpRiskAllele, java.util.List ontologies, java.util.List scores) {
this.diseaseTrait = diseaseTrait;
this.strongestSnpRiskAllele = strongestSnpRiskAllele;
this.ontologies = ontologies;
this.scores = scores;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return diseaseTrait;
case 1: return strongestSnpRiskAllele;
case 2: return ontologies;
case 3: return scores;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: diseaseTrait = (java.lang.String)value$; break;
case 1: strongestSnpRiskAllele = (java.util.List)value$; break;
case 2: ontologies = (java.util.List)value$; break;
case 3: scores = (java.util.List)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'diseaseTrait' field.
*/
public java.lang.String getDiseaseTrait() {
return diseaseTrait;
}
/**
* Sets the value of the 'diseaseTrait' field.
* @param value the value to set.
*/
public void setDiseaseTrait(java.lang.String value) {
this.diseaseTrait = value;
}
/**
* Gets the value of the 'strongestSnpRiskAllele' field.
*/
public java.util.List getStrongestSnpRiskAllele() {
return strongestSnpRiskAllele;
}
/**
* Sets the value of the 'strongestSnpRiskAllele' field.
* @param value the value to set.
*/
public void setStrongestSnpRiskAllele(java.util.List value) {
this.strongestSnpRiskAllele = value;
}
/**
* Gets the value of the 'ontologies' field.
*/
public java.util.List getOntologies() {
return ontologies;
}
/**
* Sets the value of the 'ontologies' field.
* @param value the value to set.
*/
public void setOntologies(java.util.List value) {
this.ontologies = value;
}
/**
* Gets the value of the 'scores' field.
*/
public java.util.List getScores() {
return scores;
}
/**
* Sets the value of the 'scores' field.
* @param value the value to set.
*/
public void setScores(java.util.List value) {
this.scores = value;
}
/** Creates a new GwasAssociationStudyTrait RecordBuilder */
public static org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder newBuilder() {
return new org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder();
}
/** Creates a new GwasAssociationStudyTrait RecordBuilder by copying an existing Builder */
public static org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder newBuilder(org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder other) {
return new org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder(other);
}
/** Creates a new GwasAssociationStudyTrait RecordBuilder by copying an existing GwasAssociationStudyTrait instance */
public static org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder newBuilder(org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait other) {
return new org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder(other);
}
/**
* RecordBuilder for GwasAssociationStudyTrait instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String diseaseTrait;
private java.util.List strongestSnpRiskAllele;
private java.util.List ontologies;
private java.util.List scores;
/** Creates a new Builder */
private Builder() {
super(org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder other) {
super(other);
if (isValidValue(fields()[0], other.diseaseTrait)) {
this.diseaseTrait = data().deepCopy(fields()[0].schema(), other.diseaseTrait);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.strongestSnpRiskAllele)) {
this.strongestSnpRiskAllele = data().deepCopy(fields()[1].schema(), other.strongestSnpRiskAllele);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.ontologies)) {
this.ontologies = data().deepCopy(fields()[2].schema(), other.ontologies);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.scores)) {
this.scores = data().deepCopy(fields()[3].schema(), other.scores);
fieldSetFlags()[3] = true;
}
}
/** Creates a Builder by copying an existing GwasAssociationStudyTrait instance */
private Builder(org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait other) {
super(org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.SCHEMA$);
if (isValidValue(fields()[0], other.diseaseTrait)) {
this.diseaseTrait = data().deepCopy(fields()[0].schema(), other.diseaseTrait);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.strongestSnpRiskAllele)) {
this.strongestSnpRiskAllele = data().deepCopy(fields()[1].schema(), other.strongestSnpRiskAllele);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.ontologies)) {
this.ontologies = data().deepCopy(fields()[2].schema(), other.ontologies);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.scores)) {
this.scores = data().deepCopy(fields()[3].schema(), other.scores);
fieldSetFlags()[3] = true;
}
}
/** Gets the value of the 'diseaseTrait' field */
public java.lang.String getDiseaseTrait() {
return diseaseTrait;
}
/** Sets the value of the 'diseaseTrait' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder setDiseaseTrait(java.lang.String value) {
validate(fields()[0], value);
this.diseaseTrait = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'diseaseTrait' field has been set */
public boolean hasDiseaseTrait() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'diseaseTrait' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder clearDiseaseTrait() {
diseaseTrait = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'strongestSnpRiskAllele' field */
public java.util.List getStrongestSnpRiskAllele() {
return strongestSnpRiskAllele;
}
/** Sets the value of the 'strongestSnpRiskAllele' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder setStrongestSnpRiskAllele(java.util.List value) {
validate(fields()[1], value);
this.strongestSnpRiskAllele = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'strongestSnpRiskAllele' field has been set */
public boolean hasStrongestSnpRiskAllele() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'strongestSnpRiskAllele' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder clearStrongestSnpRiskAllele() {
strongestSnpRiskAllele = null;
fieldSetFlags()[1] = false;
return this;
}
/** Gets the value of the 'ontologies' field */
public java.util.List getOntologies() {
return ontologies;
}
/** Sets the value of the 'ontologies' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder setOntologies(java.util.List value) {
validate(fields()[2], value);
this.ontologies = value;
fieldSetFlags()[2] = true;
return this;
}
/** Checks whether the 'ontologies' field has been set */
public boolean hasOntologies() {
return fieldSetFlags()[2];
}
/** Clears the value of the 'ontologies' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder clearOntologies() {
ontologies = null;
fieldSetFlags()[2] = false;
return this;
}
/** Gets the value of the 'scores' field */
public java.util.List getScores() {
return scores;
}
/** Sets the value of the 'scores' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder setScores(java.util.List value) {
validate(fields()[3], value);
this.scores = value;
fieldSetFlags()[3] = true;
return this;
}
/** Checks whether the 'scores' field has been set */
public boolean hasScores() {
return fieldSetFlags()[3];
}
/** Clears the value of the 'scores' field */
public org.opencb.biodata.models.variant.avro.GwasAssociationStudyTrait.Builder clearScores() {
scores = null;
fieldSetFlags()[3] = false;
return this;
}
@Override
public GwasAssociationStudyTrait build() {
try {
GwasAssociationStudyTrait record = new GwasAssociationStudyTrait();
record.diseaseTrait = fieldSetFlags()[0] ? this.diseaseTrait : (java.lang.String) defaultValue(fields()[0]);
record.strongestSnpRiskAllele = fieldSetFlags()[1] ? this.strongestSnpRiskAllele : (java.util.List) defaultValue(fields()[1]);
record.ontologies = fieldSetFlags()[2] ? this.ontologies : (java.util.List) defaultValue(fields()[2]);
record.scores = fieldSetFlags()[3] ? this.scores : (java.util.List) defaultValue(fields()[3]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}