org.opencb.biodata.models.variant.avro.OriginalCall Maven / Gradle / Ivy
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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.opencb.biodata.models.variant.avro;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class OriginalCall extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"OriginalCall\",\"namespace\":\"org.opencb.biodata.models.variant.avro\",\"fields\":[{\"name\":\"variantId\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"doc\":\"* Original variant ID before normalization including all secondary alternates.\"},{\"name\":\"alleleIndex\",\"type\":[\"null\",\"int\"],\"doc\":\"* Alternate allele index of the original multi-allellic variant call in which was decomposed.\"}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
/** * Original variant ID before normalization including all secondary alternates. */
private java.lang.String variantId;
/** * Alternate allele index of the original multi-allellic variant call in which was decomposed. */
private java.lang.Integer alleleIndex;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public OriginalCall() {}
/**
* All-args constructor.
*/
public OriginalCall(java.lang.String variantId, java.lang.Integer alleleIndex) {
this.variantId = variantId;
this.alleleIndex = alleleIndex;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return variantId;
case 1: return alleleIndex;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: variantId = (java.lang.String)value$; break;
case 1: alleleIndex = (java.lang.Integer)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'variantId' field.
* * Original variant ID before normalization including all secondary alternates. */
public java.lang.String getVariantId() {
return variantId;
}
/**
* Sets the value of the 'variantId' field.
* * Original variant ID before normalization including all secondary alternates. * @param value the value to set.
*/
public void setVariantId(java.lang.String value) {
this.variantId = value;
}
/**
* Gets the value of the 'alleleIndex' field.
* * Alternate allele index of the original multi-allellic variant call in which was decomposed. */
public java.lang.Integer getAlleleIndex() {
return alleleIndex;
}
/**
* Sets the value of the 'alleleIndex' field.
* * Alternate allele index of the original multi-allellic variant call in which was decomposed. * @param value the value to set.
*/
public void setAlleleIndex(java.lang.Integer value) {
this.alleleIndex = value;
}
/** Creates a new OriginalCall RecordBuilder */
public static org.opencb.biodata.models.variant.avro.OriginalCall.Builder newBuilder() {
return new org.opencb.biodata.models.variant.avro.OriginalCall.Builder();
}
/** Creates a new OriginalCall RecordBuilder by copying an existing Builder */
public static org.opencb.biodata.models.variant.avro.OriginalCall.Builder newBuilder(org.opencb.biodata.models.variant.avro.OriginalCall.Builder other) {
return new org.opencb.biodata.models.variant.avro.OriginalCall.Builder(other);
}
/** Creates a new OriginalCall RecordBuilder by copying an existing OriginalCall instance */
public static org.opencb.biodata.models.variant.avro.OriginalCall.Builder newBuilder(org.opencb.biodata.models.variant.avro.OriginalCall other) {
return new org.opencb.biodata.models.variant.avro.OriginalCall.Builder(other);
}
/**
* RecordBuilder for OriginalCall instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String variantId;
private java.lang.Integer alleleIndex;
/** Creates a new Builder */
private Builder() {
super(org.opencb.biodata.models.variant.avro.OriginalCall.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.opencb.biodata.models.variant.avro.OriginalCall.Builder other) {
super(other);
if (isValidValue(fields()[0], other.variantId)) {
this.variantId = data().deepCopy(fields()[0].schema(), other.variantId);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.alleleIndex)) {
this.alleleIndex = data().deepCopy(fields()[1].schema(), other.alleleIndex);
fieldSetFlags()[1] = true;
}
}
/** Creates a Builder by copying an existing OriginalCall instance */
private Builder(org.opencb.biodata.models.variant.avro.OriginalCall other) {
super(org.opencb.biodata.models.variant.avro.OriginalCall.SCHEMA$);
if (isValidValue(fields()[0], other.variantId)) {
this.variantId = data().deepCopy(fields()[0].schema(), other.variantId);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.alleleIndex)) {
this.alleleIndex = data().deepCopy(fields()[1].schema(), other.alleleIndex);
fieldSetFlags()[1] = true;
}
}
/** Gets the value of the 'variantId' field */
public java.lang.String getVariantId() {
return variantId;
}
/** Sets the value of the 'variantId' field */
public org.opencb.biodata.models.variant.avro.OriginalCall.Builder setVariantId(java.lang.String value) {
validate(fields()[0], value);
this.variantId = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'variantId' field has been set */
public boolean hasVariantId() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'variantId' field */
public org.opencb.biodata.models.variant.avro.OriginalCall.Builder clearVariantId() {
variantId = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'alleleIndex' field */
public java.lang.Integer getAlleleIndex() {
return alleleIndex;
}
/** Sets the value of the 'alleleIndex' field */
public org.opencb.biodata.models.variant.avro.OriginalCall.Builder setAlleleIndex(java.lang.Integer value) {
validate(fields()[1], value);
this.alleleIndex = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'alleleIndex' field has been set */
public boolean hasAlleleIndex() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'alleleIndex' field */
public org.opencb.biodata.models.variant.avro.OriginalCall.Builder clearAlleleIndex() {
alleleIndex = null;
fieldSetFlags()[1] = false;
return this;
}
@Override
public OriginalCall build() {
try {
OriginalCall record = new OriginalCall();
record.variantId = fieldSetFlags()[0] ? this.variantId : (java.lang.String) defaultValue(fields()[0]);
record.alleleIndex = fieldSetFlags()[1] ? this.alleleIndex : (java.lang.Integer) defaultValue(fields()[1]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}