org.opencb.biodata.models.variant.avro.Repeat Maven / Gradle / Ivy
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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.opencb.biodata.models.variant.avro;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class Repeat extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"Repeat\",\"namespace\":\"org.opencb.biodata.models.variant.avro\",\"fields\":[{\"name\":\"id\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"chromosome\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"start\",\"type\":[\"null\",\"int\"]},{\"name\":\"end\",\"type\":[\"null\",\"int\"]},{\"name\":\"period\",\"type\":[\"null\",\"int\"]},{\"name\":\"consensusSize\",\"type\":[\"null\",\"int\"]},{\"name\":\"copyNumber\",\"type\":[\"null\",\"float\"]},{\"name\":\"percentageMatch\",\"type\":[\"null\",\"float\"]},{\"name\":\"score\",\"type\":[\"null\",\"float\"]},{\"name\":\"sequence\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"source\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
private java.lang.String id;
private java.lang.String chromosome;
private java.lang.Integer start;
private java.lang.Integer end;
private java.lang.Integer period;
private java.lang.Integer consensusSize;
private java.lang.Float copyNumber;
private java.lang.Float percentageMatch;
private java.lang.Float score;
private java.lang.String sequence;
private java.lang.String source;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public Repeat() {}
/**
* All-args constructor.
*/
public Repeat(java.lang.String id, java.lang.String chromosome, java.lang.Integer start, java.lang.Integer end, java.lang.Integer period, java.lang.Integer consensusSize, java.lang.Float copyNumber, java.lang.Float percentageMatch, java.lang.Float score, java.lang.String sequence, java.lang.String source) {
this.id = id;
this.chromosome = chromosome;
this.start = start;
this.end = end;
this.period = period;
this.consensusSize = consensusSize;
this.copyNumber = copyNumber;
this.percentageMatch = percentageMatch;
this.score = score;
this.sequence = sequence;
this.source = source;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return id;
case 1: return chromosome;
case 2: return start;
case 3: return end;
case 4: return period;
case 5: return consensusSize;
case 6: return copyNumber;
case 7: return percentageMatch;
case 8: return score;
case 9: return sequence;
case 10: return source;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: id = (java.lang.String)value$; break;
case 1: chromosome = (java.lang.String)value$; break;
case 2: start = (java.lang.Integer)value$; break;
case 3: end = (java.lang.Integer)value$; break;
case 4: period = (java.lang.Integer)value$; break;
case 5: consensusSize = (java.lang.Integer)value$; break;
case 6: copyNumber = (java.lang.Float)value$; break;
case 7: percentageMatch = (java.lang.Float)value$; break;
case 8: score = (java.lang.Float)value$; break;
case 9: sequence = (java.lang.String)value$; break;
case 10: source = (java.lang.String)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'id' field.
*/
public java.lang.String getId() {
return id;
}
/**
* Sets the value of the 'id' field.
* @param value the value to set.
*/
public void setId(java.lang.String value) {
this.id = value;
}
/**
* Gets the value of the 'chromosome' field.
*/
public java.lang.String getChromosome() {
return chromosome;
}
/**
* Sets the value of the 'chromosome' field.
* @param value the value to set.
*/
public void setChromosome(java.lang.String value) {
this.chromosome = value;
}
/**
* Gets the value of the 'start' field.
*/
public java.lang.Integer getStart() {
return start;
}
/**
* Sets the value of the 'start' field.
* @param value the value to set.
*/
public void setStart(java.lang.Integer value) {
this.start = value;
}
/**
* Gets the value of the 'end' field.
*/
public java.lang.Integer getEnd() {
return end;
}
/**
* Sets the value of the 'end' field.
* @param value the value to set.
*/
public void setEnd(java.lang.Integer value) {
this.end = value;
}
/**
* Gets the value of the 'period' field.
*/
public java.lang.Integer getPeriod() {
return period;
}
/**
* Sets the value of the 'period' field.
* @param value the value to set.
*/
public void setPeriod(java.lang.Integer value) {
this.period = value;
}
/**
* Gets the value of the 'consensusSize' field.
*/
public java.lang.Integer getConsensusSize() {
return consensusSize;
}
/**
* Sets the value of the 'consensusSize' field.
* @param value the value to set.
*/
public void setConsensusSize(java.lang.Integer value) {
this.consensusSize = value;
}
/**
* Gets the value of the 'copyNumber' field.
*/
public java.lang.Float getCopyNumber() {
return copyNumber;
}
/**
* Sets the value of the 'copyNumber' field.
* @param value the value to set.
*/
public void setCopyNumber(java.lang.Float value) {
this.copyNumber = value;
}
/**
* Gets the value of the 'percentageMatch' field.
*/
public java.lang.Float getPercentageMatch() {
return percentageMatch;
}
/**
* Sets the value of the 'percentageMatch' field.
* @param value the value to set.
*/
public void setPercentageMatch(java.lang.Float value) {
this.percentageMatch = value;
}
/**
* Gets the value of the 'score' field.
*/
public java.lang.Float getScore() {
return score;
}
/**
* Sets the value of the 'score' field.
* @param value the value to set.
*/
public void setScore(java.lang.Float value) {
this.score = value;
}
/**
* Gets the value of the 'sequence' field.
*/
public java.lang.String getSequence() {
return sequence;
}
/**
* Sets the value of the 'sequence' field.
* @param value the value to set.
*/
public void setSequence(java.lang.String value) {
this.sequence = value;
}
/**
* Gets the value of the 'source' field.
*/
public java.lang.String getSource() {
return source;
}
/**
* Sets the value of the 'source' field.
* @param value the value to set.
*/
public void setSource(java.lang.String value) {
this.source = value;
}
/** Creates a new Repeat RecordBuilder */
public static org.opencb.biodata.models.variant.avro.Repeat.Builder newBuilder() {
return new org.opencb.biodata.models.variant.avro.Repeat.Builder();
}
/** Creates a new Repeat RecordBuilder by copying an existing Builder */
public static org.opencb.biodata.models.variant.avro.Repeat.Builder newBuilder(org.opencb.biodata.models.variant.avro.Repeat.Builder other) {
return new org.opencb.biodata.models.variant.avro.Repeat.Builder(other);
}
/** Creates a new Repeat RecordBuilder by copying an existing Repeat instance */
public static org.opencb.biodata.models.variant.avro.Repeat.Builder newBuilder(org.opencb.biodata.models.variant.avro.Repeat other) {
return new org.opencb.biodata.models.variant.avro.Repeat.Builder(other);
}
/**
* RecordBuilder for Repeat instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String id;
private java.lang.String chromosome;
private java.lang.Integer start;
private java.lang.Integer end;
private java.lang.Integer period;
private java.lang.Integer consensusSize;
private java.lang.Float copyNumber;
private java.lang.Float percentageMatch;
private java.lang.Float score;
private java.lang.String sequence;
private java.lang.String source;
/** Creates a new Builder */
private Builder() {
super(org.opencb.biodata.models.variant.avro.Repeat.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.opencb.biodata.models.variant.avro.Repeat.Builder other) {
super(other);
if (isValidValue(fields()[0], other.id)) {
this.id = data().deepCopy(fields()[0].schema(), other.id);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.chromosome)) {
this.chromosome = data().deepCopy(fields()[1].schema(), other.chromosome);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.start)) {
this.start = data().deepCopy(fields()[2].schema(), other.start);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.end)) {
this.end = data().deepCopy(fields()[3].schema(), other.end);
fieldSetFlags()[3] = true;
}
if (isValidValue(fields()[4], other.period)) {
this.period = data().deepCopy(fields()[4].schema(), other.period);
fieldSetFlags()[4] = true;
}
if (isValidValue(fields()[5], other.consensusSize)) {
this.consensusSize = data().deepCopy(fields()[5].schema(), other.consensusSize);
fieldSetFlags()[5] = true;
}
if (isValidValue(fields()[6], other.copyNumber)) {
this.copyNumber = data().deepCopy(fields()[6].schema(), other.copyNumber);
fieldSetFlags()[6] = true;
}
if (isValidValue(fields()[7], other.percentageMatch)) {
this.percentageMatch = data().deepCopy(fields()[7].schema(), other.percentageMatch);
fieldSetFlags()[7] = true;
}
if (isValidValue(fields()[8], other.score)) {
this.score = data().deepCopy(fields()[8].schema(), other.score);
fieldSetFlags()[8] = true;
}
if (isValidValue(fields()[9], other.sequence)) {
this.sequence = data().deepCopy(fields()[9].schema(), other.sequence);
fieldSetFlags()[9] = true;
}
if (isValidValue(fields()[10], other.source)) {
this.source = data().deepCopy(fields()[10].schema(), other.source);
fieldSetFlags()[10] = true;
}
}
/** Creates a Builder by copying an existing Repeat instance */
private Builder(org.opencb.biodata.models.variant.avro.Repeat other) {
super(org.opencb.biodata.models.variant.avro.Repeat.SCHEMA$);
if (isValidValue(fields()[0], other.id)) {
this.id = data().deepCopy(fields()[0].schema(), other.id);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.chromosome)) {
this.chromosome = data().deepCopy(fields()[1].schema(), other.chromosome);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.start)) {
this.start = data().deepCopy(fields()[2].schema(), other.start);
fieldSetFlags()[2] = true;
}
if (isValidValue(fields()[3], other.end)) {
this.end = data().deepCopy(fields()[3].schema(), other.end);
fieldSetFlags()[3] = true;
}
if (isValidValue(fields()[4], other.period)) {
this.period = data().deepCopy(fields()[4].schema(), other.period);
fieldSetFlags()[4] = true;
}
if (isValidValue(fields()[5], other.consensusSize)) {
this.consensusSize = data().deepCopy(fields()[5].schema(), other.consensusSize);
fieldSetFlags()[5] = true;
}
if (isValidValue(fields()[6], other.copyNumber)) {
this.copyNumber = data().deepCopy(fields()[6].schema(), other.copyNumber);
fieldSetFlags()[6] = true;
}
if (isValidValue(fields()[7], other.percentageMatch)) {
this.percentageMatch = data().deepCopy(fields()[7].schema(), other.percentageMatch);
fieldSetFlags()[7] = true;
}
if (isValidValue(fields()[8], other.score)) {
this.score = data().deepCopy(fields()[8].schema(), other.score);
fieldSetFlags()[8] = true;
}
if (isValidValue(fields()[9], other.sequence)) {
this.sequence = data().deepCopy(fields()[9].schema(), other.sequence);
fieldSetFlags()[9] = true;
}
if (isValidValue(fields()[10], other.source)) {
this.source = data().deepCopy(fields()[10].schema(), other.source);
fieldSetFlags()[10] = true;
}
}
/** Gets the value of the 'id' field */
public java.lang.String getId() {
return id;
}
/** Sets the value of the 'id' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setId(java.lang.String value) {
validate(fields()[0], value);
this.id = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'id' field has been set */
public boolean hasId() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'id' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearId() {
id = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'chromosome' field */
public java.lang.String getChromosome() {
return chromosome;
}
/** Sets the value of the 'chromosome' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setChromosome(java.lang.String value) {
validate(fields()[1], value);
this.chromosome = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'chromosome' field has been set */
public boolean hasChromosome() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'chromosome' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearChromosome() {
chromosome = null;
fieldSetFlags()[1] = false;
return this;
}
/** Gets the value of the 'start' field */
public java.lang.Integer getStart() {
return start;
}
/** Sets the value of the 'start' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setStart(java.lang.Integer value) {
validate(fields()[2], value);
this.start = value;
fieldSetFlags()[2] = true;
return this;
}
/** Checks whether the 'start' field has been set */
public boolean hasStart() {
return fieldSetFlags()[2];
}
/** Clears the value of the 'start' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearStart() {
start = null;
fieldSetFlags()[2] = false;
return this;
}
/** Gets the value of the 'end' field */
public java.lang.Integer getEnd() {
return end;
}
/** Sets the value of the 'end' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setEnd(java.lang.Integer value) {
validate(fields()[3], value);
this.end = value;
fieldSetFlags()[3] = true;
return this;
}
/** Checks whether the 'end' field has been set */
public boolean hasEnd() {
return fieldSetFlags()[3];
}
/** Clears the value of the 'end' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearEnd() {
end = null;
fieldSetFlags()[3] = false;
return this;
}
/** Gets the value of the 'period' field */
public java.lang.Integer getPeriod() {
return period;
}
/** Sets the value of the 'period' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setPeriod(java.lang.Integer value) {
validate(fields()[4], value);
this.period = value;
fieldSetFlags()[4] = true;
return this;
}
/** Checks whether the 'period' field has been set */
public boolean hasPeriod() {
return fieldSetFlags()[4];
}
/** Clears the value of the 'period' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearPeriod() {
period = null;
fieldSetFlags()[4] = false;
return this;
}
/** Gets the value of the 'consensusSize' field */
public java.lang.Integer getConsensusSize() {
return consensusSize;
}
/** Sets the value of the 'consensusSize' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setConsensusSize(java.lang.Integer value) {
validate(fields()[5], value);
this.consensusSize = value;
fieldSetFlags()[5] = true;
return this;
}
/** Checks whether the 'consensusSize' field has been set */
public boolean hasConsensusSize() {
return fieldSetFlags()[5];
}
/** Clears the value of the 'consensusSize' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearConsensusSize() {
consensusSize = null;
fieldSetFlags()[5] = false;
return this;
}
/** Gets the value of the 'copyNumber' field */
public java.lang.Float getCopyNumber() {
return copyNumber;
}
/** Sets the value of the 'copyNumber' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setCopyNumber(java.lang.Float value) {
validate(fields()[6], value);
this.copyNumber = value;
fieldSetFlags()[6] = true;
return this;
}
/** Checks whether the 'copyNumber' field has been set */
public boolean hasCopyNumber() {
return fieldSetFlags()[6];
}
/** Clears the value of the 'copyNumber' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearCopyNumber() {
copyNumber = null;
fieldSetFlags()[6] = false;
return this;
}
/** Gets the value of the 'percentageMatch' field */
public java.lang.Float getPercentageMatch() {
return percentageMatch;
}
/** Sets the value of the 'percentageMatch' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setPercentageMatch(java.lang.Float value) {
validate(fields()[7], value);
this.percentageMatch = value;
fieldSetFlags()[7] = true;
return this;
}
/** Checks whether the 'percentageMatch' field has been set */
public boolean hasPercentageMatch() {
return fieldSetFlags()[7];
}
/** Clears the value of the 'percentageMatch' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearPercentageMatch() {
percentageMatch = null;
fieldSetFlags()[7] = false;
return this;
}
/** Gets the value of the 'score' field */
public java.lang.Float getScore() {
return score;
}
/** Sets the value of the 'score' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setScore(java.lang.Float value) {
validate(fields()[8], value);
this.score = value;
fieldSetFlags()[8] = true;
return this;
}
/** Checks whether the 'score' field has been set */
public boolean hasScore() {
return fieldSetFlags()[8];
}
/** Clears the value of the 'score' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearScore() {
score = null;
fieldSetFlags()[8] = false;
return this;
}
/** Gets the value of the 'sequence' field */
public java.lang.String getSequence() {
return sequence;
}
/** Sets the value of the 'sequence' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setSequence(java.lang.String value) {
validate(fields()[9], value);
this.sequence = value;
fieldSetFlags()[9] = true;
return this;
}
/** Checks whether the 'sequence' field has been set */
public boolean hasSequence() {
return fieldSetFlags()[9];
}
/** Clears the value of the 'sequence' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearSequence() {
sequence = null;
fieldSetFlags()[9] = false;
return this;
}
/** Gets the value of the 'source' field */
public java.lang.String getSource() {
return source;
}
/** Sets the value of the 'source' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder setSource(java.lang.String value) {
validate(fields()[10], value);
this.source = value;
fieldSetFlags()[10] = true;
return this;
}
/** Checks whether the 'source' field has been set */
public boolean hasSource() {
return fieldSetFlags()[10];
}
/** Clears the value of the 'source' field */
public org.opencb.biodata.models.variant.avro.Repeat.Builder clearSource() {
source = null;
fieldSetFlags()[10] = false;
return this;
}
@Override
public Repeat build() {
try {
Repeat record = new Repeat();
record.id = fieldSetFlags()[0] ? this.id : (java.lang.String) defaultValue(fields()[0]);
record.chromosome = fieldSetFlags()[1] ? this.chromosome : (java.lang.String) defaultValue(fields()[1]);
record.start = fieldSetFlags()[2] ? this.start : (java.lang.Integer) defaultValue(fields()[2]);
record.end = fieldSetFlags()[3] ? this.end : (java.lang.Integer) defaultValue(fields()[3]);
record.period = fieldSetFlags()[4] ? this.period : (java.lang.Integer) defaultValue(fields()[4]);
record.consensusSize = fieldSetFlags()[5] ? this.consensusSize : (java.lang.Integer) defaultValue(fields()[5]);
record.copyNumber = fieldSetFlags()[6] ? this.copyNumber : (java.lang.Float) defaultValue(fields()[6]);
record.percentageMatch = fieldSetFlags()[7] ? this.percentageMatch : (java.lang.Float) defaultValue(fields()[7]);
record.score = fieldSetFlags()[8] ? this.score : (java.lang.Float) defaultValue(fields()[8]);
record.sequence = fieldSetFlags()[9] ? this.sequence : (java.lang.String) defaultValue(fields()[9]);
record.source = fieldSetFlags()[10] ? this.source : (java.lang.String) defaultValue(fields()[10]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}