org.opencb.biodata.models.metadata.Cohort Maven / Gradle / Ivy
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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.opencb.biodata.models.metadata;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class Cohort extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"Cohort\",\"namespace\":\"org.opencb.biodata.models.metadata\",\"fields\":[{\"name\":\"id\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"}},{\"name\":\"sampleIds\",\"type\":{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}},\"default\":[]},{\"name\":\"sampleSetType\",\"type\":{\"type\":\"enum\",\"name\":\"SampleSetType\",\"symbols\":[\"CASE_CONTROL\",\"CASE_SET\",\"CONTROL_SET\",\"PAIRED\",\"TIME_SERIES\",\"FAMILY\",\"TRIO\",\"MISCELLANEOUS\",\"UNKNOWN\"]}}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
private java.lang.String id;
private java.util.List sampleIds;
private org.opencb.biodata.models.metadata.SampleSetType sampleSetType;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public Cohort() {}
/**
* All-args constructor.
*/
public Cohort(java.lang.String id, java.util.List sampleIds, org.opencb.biodata.models.metadata.SampleSetType sampleSetType) {
this.id = id;
this.sampleIds = sampleIds;
this.sampleSetType = sampleSetType;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return id;
case 1: return sampleIds;
case 2: return sampleSetType;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: id = (java.lang.String)value$; break;
case 1: sampleIds = (java.util.List)value$; break;
case 2: sampleSetType = (org.opencb.biodata.models.metadata.SampleSetType)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'id' field.
*/
public java.lang.String getId() {
return id;
}
/**
* Sets the value of the 'id' field.
* @param value the value to set.
*/
public void setId(java.lang.String value) {
this.id = value;
}
/**
* Gets the value of the 'sampleIds' field.
*/
public java.util.List getSampleIds() {
return sampleIds;
}
/**
* Sets the value of the 'sampleIds' field.
* @param value the value to set.
*/
public void setSampleIds(java.util.List value) {
this.sampleIds = value;
}
/**
* Gets the value of the 'sampleSetType' field.
*/
public org.opencb.biodata.models.metadata.SampleSetType getSampleSetType() {
return sampleSetType;
}
/**
* Sets the value of the 'sampleSetType' field.
* @param value the value to set.
*/
public void setSampleSetType(org.opencb.biodata.models.metadata.SampleSetType value) {
this.sampleSetType = value;
}
/** Creates a new Cohort RecordBuilder */
public static org.opencb.biodata.models.metadata.Cohort.Builder newBuilder() {
return new org.opencb.biodata.models.metadata.Cohort.Builder();
}
/** Creates a new Cohort RecordBuilder by copying an existing Builder */
public static org.opencb.biodata.models.metadata.Cohort.Builder newBuilder(org.opencb.biodata.models.metadata.Cohort.Builder other) {
return new org.opencb.biodata.models.metadata.Cohort.Builder(other);
}
/** Creates a new Cohort RecordBuilder by copying an existing Cohort instance */
public static org.opencb.biodata.models.metadata.Cohort.Builder newBuilder(org.opencb.biodata.models.metadata.Cohort other) {
return new org.opencb.biodata.models.metadata.Cohort.Builder(other);
}
/**
* RecordBuilder for Cohort instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String id;
private java.util.List sampleIds;
private org.opencb.biodata.models.metadata.SampleSetType sampleSetType;
/** Creates a new Builder */
private Builder() {
super(org.opencb.biodata.models.metadata.Cohort.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.opencb.biodata.models.metadata.Cohort.Builder other) {
super(other);
if (isValidValue(fields()[0], other.id)) {
this.id = data().deepCopy(fields()[0].schema(), other.id);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.sampleIds)) {
this.sampleIds = data().deepCopy(fields()[1].schema(), other.sampleIds);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.sampleSetType)) {
this.sampleSetType = data().deepCopy(fields()[2].schema(), other.sampleSetType);
fieldSetFlags()[2] = true;
}
}
/** Creates a Builder by copying an existing Cohort instance */
private Builder(org.opencb.biodata.models.metadata.Cohort other) {
super(org.opencb.biodata.models.metadata.Cohort.SCHEMA$);
if (isValidValue(fields()[0], other.id)) {
this.id = data().deepCopy(fields()[0].schema(), other.id);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.sampleIds)) {
this.sampleIds = data().deepCopy(fields()[1].schema(), other.sampleIds);
fieldSetFlags()[1] = true;
}
if (isValidValue(fields()[2], other.sampleSetType)) {
this.sampleSetType = data().deepCopy(fields()[2].schema(), other.sampleSetType);
fieldSetFlags()[2] = true;
}
}
/** Gets the value of the 'id' field */
public java.lang.String getId() {
return id;
}
/** Sets the value of the 'id' field */
public org.opencb.biodata.models.metadata.Cohort.Builder setId(java.lang.String value) {
validate(fields()[0], value);
this.id = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'id' field has been set */
public boolean hasId() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'id' field */
public org.opencb.biodata.models.metadata.Cohort.Builder clearId() {
id = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'sampleIds' field */
public java.util.List getSampleIds() {
return sampleIds;
}
/** Sets the value of the 'sampleIds' field */
public org.opencb.biodata.models.metadata.Cohort.Builder setSampleIds(java.util.List value) {
validate(fields()[1], value);
this.sampleIds = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'sampleIds' field has been set */
public boolean hasSampleIds() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'sampleIds' field */
public org.opencb.biodata.models.metadata.Cohort.Builder clearSampleIds() {
sampleIds = null;
fieldSetFlags()[1] = false;
return this;
}
/** Gets the value of the 'sampleSetType' field */
public org.opencb.biodata.models.metadata.SampleSetType getSampleSetType() {
return sampleSetType;
}
/** Sets the value of the 'sampleSetType' field */
public org.opencb.biodata.models.metadata.Cohort.Builder setSampleSetType(org.opencb.biodata.models.metadata.SampleSetType value) {
validate(fields()[2], value);
this.sampleSetType = value;
fieldSetFlags()[2] = true;
return this;
}
/** Checks whether the 'sampleSetType' field has been set */
public boolean hasSampleSetType() {
return fieldSetFlags()[2];
}
/** Clears the value of the 'sampleSetType' field */
public org.opencb.biodata.models.metadata.Cohort.Builder clearSampleSetType() {
sampleSetType = null;
fieldSetFlags()[2] = false;
return this;
}
@Override
public Cohort build() {
try {
Cohort record = new Cohort();
record.id = fieldSetFlags()[0] ? this.id : (java.lang.String) defaultValue(fields()[0]);
record.sampleIds = fieldSetFlags()[1] ? this.sampleIds : (java.util.List) defaultValue(fields()[1]);
record.sampleSetType = fieldSetFlags()[2] ? this.sampleSetType : (org.opencb.biodata.models.metadata.SampleSetType) defaultValue(fields()[2]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}
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