org.opencb.biodata.models.metadata.Sample Maven / Gradle / Ivy
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/**
* Autogenerated by Avro
*
* DO NOT EDIT DIRECTLY
*/
package org.opencb.biodata.models.metadata;
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class Sample extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"Sample\",\"namespace\":\"org.opencb.biodata.models.metadata\",\"fields\":[{\"name\":\"id\",\"type\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"doc\":\"Sample identifier\"},{\"name\":\"annotations\",\"type\":{\"type\":\"map\",\"values\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"avro.java.string\":\"String\"},\"doc\":\"Sample annotations stored in a map of attributes according to the format:\\n attribute_name[:x] where x defines the attribute type, its valid values are:\\n n for numeric (i = integer, f = float)\\n s for string\\n b for boolean\\n\\n e.g. age:n, population:s, height:n, weight, risk factors, secondary conditions,...\",\"default\":{}}]}");
public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
/** Sample identifier */
private java.lang.String id;
/** Sample annotations stored in a map of attributes according to the format:
attribute_name[:x] where x defines the attribute type, its valid values are:
n for numeric (i = integer, f = float)
s for string
b for boolean
e.g. age:n, population:s, height:n, weight, risk factors, secondary conditions,... */
private java.util.Map annotations;
/**
* Default constructor. Note that this does not initialize fields
* to their default values from the schema. If that is desired then
* one should use newBuilder().
*/
public Sample() {}
/**
* All-args constructor.
*/
public Sample(java.lang.String id, java.util.Map annotations) {
this.id = id;
this.annotations = annotations;
}
public org.apache.avro.Schema getSchema() { return SCHEMA$; }
// Used by DatumWriter. Applications should not call.
public java.lang.Object get(int field$) {
switch (field$) {
case 0: return id;
case 1: return annotations;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
// Used by DatumReader. Applications should not call.
@SuppressWarnings(value="unchecked")
public void put(int field$, java.lang.Object value$) {
switch (field$) {
case 0: id = (java.lang.String)value$; break;
case 1: annotations = (java.util.Map)value$; break;
default: throw new org.apache.avro.AvroRuntimeException("Bad index");
}
}
/**
* Gets the value of the 'id' field.
* Sample identifier */
public java.lang.String getId() {
return id;
}
/**
* Sets the value of the 'id' field.
* Sample identifier * @param value the value to set.
*/
public void setId(java.lang.String value) {
this.id = value;
}
/**
* Gets the value of the 'annotations' field.
* Sample annotations stored in a map of attributes according to the format:
attribute_name[:x] where x defines the attribute type, its valid values are:
n for numeric (i = integer, f = float)
s for string
b for boolean
e.g. age:n, population:s, height:n, weight, risk factors, secondary conditions,... */
public java.util.Map getAnnotations() {
return annotations;
}
/**
* Sets the value of the 'annotations' field.
* Sample annotations stored in a map of attributes according to the format:
attribute_name[:x] where x defines the attribute type, its valid values are:
n for numeric (i = integer, f = float)
s for string
b for boolean
e.g. age:n, population:s, height:n, weight, risk factors, secondary conditions,... * @param value the value to set.
*/
public void setAnnotations(java.util.Map value) {
this.annotations = value;
}
/** Creates a new Sample RecordBuilder */
public static org.opencb.biodata.models.metadata.Sample.Builder newBuilder() {
return new org.opencb.biodata.models.metadata.Sample.Builder();
}
/** Creates a new Sample RecordBuilder by copying an existing Builder */
public static org.opencb.biodata.models.metadata.Sample.Builder newBuilder(org.opencb.biodata.models.metadata.Sample.Builder other) {
return new org.opencb.biodata.models.metadata.Sample.Builder(other);
}
/** Creates a new Sample RecordBuilder by copying an existing Sample instance */
public static org.opencb.biodata.models.metadata.Sample.Builder newBuilder(org.opencb.biodata.models.metadata.Sample other) {
return new org.opencb.biodata.models.metadata.Sample.Builder(other);
}
/**
* RecordBuilder for Sample instances.
*/
public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
implements org.apache.avro.data.RecordBuilder {
private java.lang.String id;
private java.util.Map annotations;
/** Creates a new Builder */
private Builder() {
super(org.opencb.biodata.models.metadata.Sample.SCHEMA$);
}
/** Creates a Builder by copying an existing Builder */
private Builder(org.opencb.biodata.models.metadata.Sample.Builder other) {
super(other);
if (isValidValue(fields()[0], other.id)) {
this.id = data().deepCopy(fields()[0].schema(), other.id);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.annotations)) {
this.annotations = data().deepCopy(fields()[1].schema(), other.annotations);
fieldSetFlags()[1] = true;
}
}
/** Creates a Builder by copying an existing Sample instance */
private Builder(org.opencb.biodata.models.metadata.Sample other) {
super(org.opencb.biodata.models.metadata.Sample.SCHEMA$);
if (isValidValue(fields()[0], other.id)) {
this.id = data().deepCopy(fields()[0].schema(), other.id);
fieldSetFlags()[0] = true;
}
if (isValidValue(fields()[1], other.annotations)) {
this.annotations = data().deepCopy(fields()[1].schema(), other.annotations);
fieldSetFlags()[1] = true;
}
}
/** Gets the value of the 'id' field */
public java.lang.String getId() {
return id;
}
/** Sets the value of the 'id' field */
public org.opencb.biodata.models.metadata.Sample.Builder setId(java.lang.String value) {
validate(fields()[0], value);
this.id = value;
fieldSetFlags()[0] = true;
return this;
}
/** Checks whether the 'id' field has been set */
public boolean hasId() {
return fieldSetFlags()[0];
}
/** Clears the value of the 'id' field */
public org.opencb.biodata.models.metadata.Sample.Builder clearId() {
id = null;
fieldSetFlags()[0] = false;
return this;
}
/** Gets the value of the 'annotations' field */
public java.util.Map getAnnotations() {
return annotations;
}
/** Sets the value of the 'annotations' field */
public org.opencb.biodata.models.metadata.Sample.Builder setAnnotations(java.util.Map value) {
validate(fields()[1], value);
this.annotations = value;
fieldSetFlags()[1] = true;
return this;
}
/** Checks whether the 'annotations' field has been set */
public boolean hasAnnotations() {
return fieldSetFlags()[1];
}
/** Clears the value of the 'annotations' field */
public org.opencb.biodata.models.metadata.Sample.Builder clearAnnotations() {
annotations = null;
fieldSetFlags()[1] = false;
return this;
}
@Override
public Sample build() {
try {
Sample record = new Sample();
record.id = fieldSetFlags()[0] ? this.id : (java.lang.String) defaultValue(fields()[0]);
record.annotations = fieldSetFlags()[1] ? this.annotations : (java.util.Map) defaultValue(fields()[1]);
return record;
} catch (Exception e) {
throw new org.apache.avro.AvroRuntimeException(e);
}
}
}
}
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