org.opencb.biodata.models.variant.avro.IssueEntry Maven / Gradle / Ivy

Go to download
Show more of this group Show more artifacts with this name
Show all versions of biodata-models Show documentation
The newest version!
/**
 * Autogenerated by Avro
 * 
 * DO NOT EDIT DIRECTLY
 */
package org.opencb.biodata.models.variant.avro;  
@SuppressWarnings("all")
@org.apache.avro.specific.AvroGenerated
public class IssueEntry extends org.apache.avro.specific.SpecificRecordBase implements org.apache.avro.specific.SpecificRecord {
  public static final org.apache.avro.Schema SCHEMA$ = new org.apache.avro.Schema.Parser().parse("{\"type\":\"record\",\"name\":\"IssueEntry\",\"namespace\":\"org.opencb.biodata.models.variant.avro\",\"fields\":[{\"name\":\"type\",\"type\":{\"type\":\"enum\",\"name\":\"IssueType\",\"symbols\":[\"DUPLICATION\",\"DISCREPANCY\",\"MENDELIAN_ERROR\",\"DE_NOVO\",\"COMPOUND_HETEROZYGOUS\"]}},{\"name\":\"sample\",\"type\":{\"type\":\"record\",\"name\":\"SampleEntry\",\"fields\":[{\"name\":\"sampleId\",\"type\":[\"null\",{\"type\":\"string\",\"avro.java.string\":\"String\"}]},{\"name\":\"fileIndex\",\"type\":[\"null\",\"int\"]},{\"name\":\"data\",\"type\":{\"type\":\"array\",\"items\":{\"type\":\"string\",\"avro.java.string\":\"String\"}}}]}},{\"name\":\"data\",\"type\":{\"type\":\"map\",\"values\":{\"type\":\"string\",\"avro.java.string\":\"String\"},\"avro.java.string\":\"String\"}}]}");
  public static org.apache.avro.Schema getClassSchema() { return SCHEMA$; }
   private org.opencb.biodata.models.variant.avro.IssueType type;
   private org.opencb.biodata.models.variant.avro.SampleEntry sample;
   private java.util.Map data;

  /**
   * Default constructor.  Note that this does not initialize fields
   * to their default values from the schema.  If that is desired then
   * one should use newBuilder(). 
   */
  public IssueEntry() {}

  /**
   * All-args constructor.
   */
  public IssueEntry(org.opencb.biodata.models.variant.avro.IssueType type, org.opencb.biodata.models.variant.avro.SampleEntry sample, java.util.Map data) {
    this.type = type;
    this.sample = sample;
    this.data = data;
  }

  public org.apache.avro.Schema getSchema() { return SCHEMA$; }
  // Used by DatumWriter.  Applications should not call. 
  public java.lang.Object get(int field$) {
    switch (field$) {
    case 0: return type;
    case 1: return sample;
    case 2: return data;
    default: throw new org.apache.avro.AvroRuntimeException("Bad index");
    }
  }
  // Used by DatumReader.  Applications should not call. 
  @SuppressWarnings(value="unchecked")
  public void put(int field$, java.lang.Object value$) {
    switch (field$) {
    case 0: type = (org.opencb.biodata.models.variant.avro.IssueType)value$; break;
    case 1: sample = (org.opencb.biodata.models.variant.avro.SampleEntry)value$; break;
    case 2: data = (java.util.Map)value$; break;
    default: throw new org.apache.avro.AvroRuntimeException("Bad index");
    }
  }

  /**
   * Gets the value of the 'type' field.
   */
  public org.opencb.biodata.models.variant.avro.IssueType getType() {
    return type;
  }

  /**
   * Sets the value of the 'type' field.
   * @param value the value to set.
   */
  public void setType(org.opencb.biodata.models.variant.avro.IssueType value) {
    this.type = value;
  }

  /**
   * Gets the value of the 'sample' field.
   */
  public org.opencb.biodata.models.variant.avro.SampleEntry getSample() {
    return sample;
  }

  /**
   * Sets the value of the 'sample' field.
   * @param value the value to set.
   */
  public void setSample(org.opencb.biodata.models.variant.avro.SampleEntry value) {
    this.sample = value;
  }

  /**
   * Gets the value of the 'data' field.
   */
  public java.util.Map getData() {
    return data;
  }

  /**
   * Sets the value of the 'data' field.
   * @param value the value to set.
   */
  public void setData(java.util.Map value) {
    this.data = value;
  }

  /** Creates a new IssueEntry RecordBuilder */
  public static org.opencb.biodata.models.variant.avro.IssueEntry.Builder newBuilder() {
    return new org.opencb.biodata.models.variant.avro.IssueEntry.Builder();
  }
  
  /** Creates a new IssueEntry RecordBuilder by copying an existing Builder */
  public static org.opencb.biodata.models.variant.avro.IssueEntry.Builder newBuilder(org.opencb.biodata.models.variant.avro.IssueEntry.Builder other) {
    return new org.opencb.biodata.models.variant.avro.IssueEntry.Builder(other);
  }
  
  /** Creates a new IssueEntry RecordBuilder by copying an existing IssueEntry instance */
  public static org.opencb.biodata.models.variant.avro.IssueEntry.Builder newBuilder(org.opencb.biodata.models.variant.avro.IssueEntry other) {
    return new org.opencb.biodata.models.variant.avro.IssueEntry.Builder(other);
  }
  
  /**
   * RecordBuilder for IssueEntry instances.
   */
  public static class Builder extends org.apache.avro.specific.SpecificRecordBuilderBase
    implements org.apache.avro.data.RecordBuilder {

    private org.opencb.biodata.models.variant.avro.IssueType type;
    private org.opencb.biodata.models.variant.avro.SampleEntry sample;
    private java.util.Map data;

    /** Creates a new Builder */
    private Builder() {
      super(org.opencb.biodata.models.variant.avro.IssueEntry.SCHEMA$);
    }
    
    /** Creates a Builder by copying an existing Builder */
    private Builder(org.opencb.biodata.models.variant.avro.IssueEntry.Builder other) {
      super(other);
      if (isValidValue(fields()[0], other.type)) {
        this.type = data().deepCopy(fields()[0].schema(), other.type);
        fieldSetFlags()[0] = true;
      }
      if (isValidValue(fields()[1], other.sample)) {
        this.sample = data().deepCopy(fields()[1].schema(), other.sample);
        fieldSetFlags()[1] = true;
      }
      if (isValidValue(fields()[2], other.data)) {
        this.data = data().deepCopy(fields()[2].schema(), other.data);
        fieldSetFlags()[2] = true;
      }
    }
    
    /** Creates a Builder by copying an existing IssueEntry instance */
    private Builder(org.opencb.biodata.models.variant.avro.IssueEntry other) {
            super(org.opencb.biodata.models.variant.avro.IssueEntry.SCHEMA$);
      if (isValidValue(fields()[0], other.type)) {
        this.type = data().deepCopy(fields()[0].schema(), other.type);
        fieldSetFlags()[0] = true;
      }
      if (isValidValue(fields()[1], other.sample)) {
        this.sample = data().deepCopy(fields()[1].schema(), other.sample);
        fieldSetFlags()[1] = true;
      }
      if (isValidValue(fields()[2], other.data)) {
        this.data = data().deepCopy(fields()[2].schema(), other.data);
        fieldSetFlags()[2] = true;
      }
    }

    /** Gets the value of the 'type' field */
    public org.opencb.biodata.models.variant.avro.IssueType getType() {
      return type;
    }
    
    /** Sets the value of the 'type' field */
    public org.opencb.biodata.models.variant.avro.IssueEntry.Builder setType(org.opencb.biodata.models.variant.avro.IssueType value) {
      validate(fields()[0], value);
      this.type = value;
      fieldSetFlags()[0] = true;
      return this; 
    }
    
    /** Checks whether the 'type' field has been set */
    public boolean hasType() {
      return fieldSetFlags()[0];
    }
    
    /** Clears the value of the 'type' field */
    public org.opencb.biodata.models.variant.avro.IssueEntry.Builder clearType() {
      type = null;
      fieldSetFlags()[0] = false;
      return this;
    }

    /** Gets the value of the 'sample' field */
    public org.opencb.biodata.models.variant.avro.SampleEntry getSample() {
      return sample;
    }
    
    /** Sets the value of the 'sample' field */
    public org.opencb.biodata.models.variant.avro.IssueEntry.Builder setSample(org.opencb.biodata.models.variant.avro.SampleEntry value) {
      validate(fields()[1], value);
      this.sample = value;
      fieldSetFlags()[1] = true;
      return this; 
    }
    
    /** Checks whether the 'sample' field has been set */
    public boolean hasSample() {
      return fieldSetFlags()[1];
    }
    
    /** Clears the value of the 'sample' field */
    public org.opencb.biodata.models.variant.avro.IssueEntry.Builder clearSample() {
      sample = null;
      fieldSetFlags()[1] = false;
      return this;
    }

    /** Gets the value of the 'data' field */
    public java.util.Map getData() {
      return data;
    }
    
    /** Sets the value of the 'data' field */
    public org.opencb.biodata.models.variant.avro.IssueEntry.Builder setData(java.util.Map value) {
      validate(fields()[2], value);
      this.data = value;
      fieldSetFlags()[2] = true;
      return this; 
    }
    
    /** Checks whether the 'data' field has been set */
    public boolean hasData() {
      return fieldSetFlags()[2];
    }
    
    /** Clears the value of the 'data' field */
    public org.opencb.biodata.models.variant.avro.IssueEntry.Builder clearData() {
      data = null;
      fieldSetFlags()[2] = false;
      return this;
    }

    @Override
    public IssueEntry build() {
      try {
        IssueEntry record = new IssueEntry();
        record.type = fieldSetFlags()[0] ? this.type : (org.opencb.biodata.models.variant.avro.IssueType) defaultValue(fields()[0]);
        record.sample = fieldSetFlags()[1] ? this.sample : (org.opencb.biodata.models.variant.avro.SampleEntry) defaultValue(fields()[1]);
        record.data = fieldSetFlags()[2] ? this.data : (java.util.Map) defaultValue(fields()[2]);
        return record;
      } catch (Exception e) {
        throw new org.apache.avro.AvroRuntimeException(e);
      }
    }
  }
}