Download biodata-tools JAR 1.1.1 with all dependencies

Files of the artifact biodata-tools version 1.1.1 from the group org.opencb.biodata.

Artifact biodata-tools
Group org.opencb.biodata
Version 1.1.1

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Source code of biodata-tools version 1.1.1

META-INF

META-INF.META-INF.MANIFEST.MF

META-INF.maven.org.opencb.biodata.biodata-tools

META-INF.maven.org.opencb.biodata.biodata-tools.META-INF.maven.org.opencb.biodata.biodata-tools.pom.properties

META-INF.maven.org.opencb.biodata.biodata-tools.META-INF.maven.org.opencb.biodata.biodata-tools.pom.xml

org.opencb.biodata.tools

org.opencb.biodata.tools.org.opencb.biodata.tools.Converter

org.opencb.biodata.tools.alignment

org.opencb.biodata.tools.alignment.org.opencb.biodata.tools.alignment.AlignmentOptions

org.opencb.biodata.tools.alignment.org.opencb.biodata.tools.alignment.BamManager

org.opencb.biodata.tools.alignment.org.opencb.biodata.tools.alignment.BamUtils

org.opencb.biodata.tools.alignment.converters

org.opencb.biodata.tools.alignment.converters.org.opencb.biodata.tools.alignment.converters.AlignmentConverter

org.opencb.biodata.tools.alignment.converters.org.opencb.biodata.tools.alignment.converters.SAMRecordToAvroReadAlignmentConverter

org.opencb.biodata.tools.alignment.converters.org.opencb.biodata.tools.alignment.converters.SAMRecordToProtoReadAlignmentConverter

org.opencb.biodata.tools.alignment.coverage

org.opencb.biodata.tools.alignment.coverage.org.opencb.biodata.tools.alignment.coverage.AvroRegionCoverageCalculator

org.opencb.biodata.tools.alignment.coverage.org.opencb.biodata.tools.alignment.coverage.RegionCoverageCalculator

org.opencb.biodata.tools.alignment.coverage.org.opencb.biodata.tools.alignment.coverage.SamRecordRegionCoverageCalculator

org.opencb.biodata.tools.alignment.filters

org.opencb.biodata.tools.alignment.filters.org.opencb.biodata.tools.alignment.filters.AlignmentFilters

org.opencb.biodata.tools.alignment.filters.org.opencb.biodata.tools.alignment.filters.ReadAlignmentFilters

org.opencb.biodata.tools.alignment.filters.org.opencb.biodata.tools.alignment.filters.SamRecordFilters

org.opencb.biodata.tools.alignment.iterators

org.opencb.biodata.tools.alignment.iterators.org.opencb.biodata.tools.alignment.iterators.AvroFileIterator

org.opencb.biodata.tools.alignment.iterators.org.opencb.biodata.tools.alignment.iterators.BamIterator

org.opencb.biodata.tools.alignment.iterators.org.opencb.biodata.tools.alignment.iterators.SAMRecordToAvroReadAlignmentBamIterator

org.opencb.biodata.tools.alignment.iterators.org.opencb.biodata.tools.alignment.iterators.SAMRecordToProtoReadAlignmentBamIterator

org.opencb.biodata.tools.alignment.iterators.org.opencb.biodata.tools.alignment.iterators.SamRecordBamIterator

org.opencb.biodata.tools.alignment.stats

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.AlignmentGlobalStats

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.AlignmentGlobalStatsCalculator

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.AvroAlignmentGlobalStatsCalculator

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.ProtoAlignmentGlobalStatsCalculator

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.SamRecordAlignmentGlobalStatsCalculator

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.SequenceInfo

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.SequenceKmers

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.SequenceKmersCalculator

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.SequenceStats

org.opencb.biodata.tools.alignment.stats.org.opencb.biodata.tools.alignment.stats.SequenceStatsCalculator

org.opencb.biodata.tools.alignment.tasks

org.opencb.biodata.tools.alignment.tasks.org.opencb.biodata.tools.alignment.tasks.AlignmentRegionCoverageCalculatorTask

org.opencb.biodata.tools.commons

org.opencb.biodata.tools.commons.org.opencb.biodata.tools.commons.ChunkFrequencyManager

org.opencb.biodata.tools.commons.org.opencb.biodata.tools.commons.CommonsFilters

org.opencb.biodata.tools.feature

org.opencb.biodata.tools.feature.org.opencb.biodata.tools.feature.BedManager

org.opencb.biodata.tools.feature.org.opencb.biodata.tools.feature.FeatureManager

org.opencb.biodata.tools.sequence

org.opencb.biodata.tools.sequence.org.opencb.biodata.tools.sequence.FastaIndexManager

org.opencb.biodata.tools.sequence.org.opencb.biodata.tools.sequence.SamtoolsFastaIndex

org.opencb.biodata.tools.variant

org.opencb.biodata.tools.variant.org.opencb.biodata.tools.variant.VariantFileUtils

org.opencb.biodata.tools.variant.org.opencb.biodata.tools.variant.VariantOptions

org.opencb.biodata.tools.variant.org.opencb.biodata.tools.variant.VariantVcfHtsjdkReader

org.opencb.biodata.tools.variant.org.opencb.biodata.tools.variant.VcfManager

org.opencb.biodata.tools.variant.algorithm

org.opencb.biodata.tools.variant.algorithm.org.opencb.biodata.tools.variant.algorithm.IdentityByState

org.opencb.biodata.tools.variant.algorithm.org.opencb.biodata.tools.variant.algorithm.IdentityByStateClustering

org.opencb.biodata.tools.variant.converters

org.opencb.biodata.tools.variant.converters.org.opencb.biodata.tools.variant.converters.Converter

org.opencb.biodata.tools.variant.converters.org.opencb.biodata.tools.variant.converters.VariantContextConverter

org.opencb.biodata.tools.variant.converters.org.opencb.biodata.tools.variant.converters.VariantContextToAvroVariantConverter

org.opencb.biodata.tools.variant.converters.org.opencb.biodata.tools.variant.converters.VariantContextToProtoVariantConverter

org.opencb.biodata.tools.variant.converters.avro

org.opencb.biodata.tools.variant.converters.avro.org.opencb.biodata.tools.variant.converters.avro.VCFHeaderToAvroVcfHeaderConverter

org.opencb.biodata.tools.variant.converters.avro.org.opencb.biodata.tools.variant.converters.avro.VariantContextToVariantConverter

org.opencb.biodata.tools.variant.converters.avro.org.opencb.biodata.tools.variant.converters.avro.VariantFileMetadataToVCFHeaderConverter

org.opencb.biodata.tools.variant.converters.avro.org.opencb.biodata.tools.variant.converters.avro.VariantStatsToPopulationFrequencyConverter

org.opencb.biodata.tools.variant.converters.ga4gh

org.opencb.biodata.tools.variant.converters.ga4gh.org.opencb.biodata.tools.variant.converters.ga4gh.Ga4ghCallSetConverter

org.opencb.biodata.tools.variant.converters.ga4gh.org.opencb.biodata.tools.variant.converters.ga4gh.Ga4ghVariantConverter

org.opencb.biodata.tools.variant.converters.ga4gh.org.opencb.biodata.tools.variant.converters.ga4gh.Ga4ghVariantSetConverter

org.opencb.biodata.tools.variant.converters.ga4gh.factories

org.opencb.biodata.tools.variant.converters.ga4gh.factories.org.opencb.biodata.tools.variant.converters.ga4gh.factories.AvroGa4GhVariantFactory

org.opencb.biodata.tools.variant.converters.ga4gh.factories.org.opencb.biodata.tools.variant.converters.ga4gh.factories.Ga4ghVariantFactory

org.opencb.biodata.tools.variant.converters.ga4gh.factories.org.opencb.biodata.tools.variant.converters.ga4gh.factories.ProtoGa4GhVariantFactory

org.opencb.biodata.tools.variant.converters.proto

org.opencb.biodata.tools.variant.converters.proto.org.opencb.biodata.tools.variant.converters.proto.VariantAvroToVariantProtoConverter

org.opencb.biodata.tools.variant.converters.proto.org.opencb.biodata.tools.variant.converters.proto.VariantContextToVariantProtoConverter

org.opencb.biodata.tools.variant.converters.proto.org.opencb.biodata.tools.variant.converters.proto.VariantTabix

org.opencb.biodata.tools.variant.converters.proto.org.opencb.biodata.tools.variant.converters.proto.VariantToProtoVcfRecord

org.opencb.biodata.tools.variant.converters.proto.org.opencb.biodata.tools.variant.converters.proto.VariantToVcfSliceConverter

org.opencb.biodata.tools.variant.converters.proto.org.opencb.biodata.tools.variant.converters.proto.VcfRecordProtoToVariantConverter

org.opencb.biodata.tools.variant.converters.proto.org.opencb.biodata.tools.variant.converters.proto.VcfSliceToVariantListConverter

org.opencb.biodata.tools.variant.filters

org.opencb.biodata.tools.variant.filters.org.opencb.biodata.tools.variant.filters.VariantAvroFilters

org.opencb.biodata.tools.variant.filters.org.opencb.biodata.tools.variant.filters.VariantContextFilters

org.opencb.biodata.tools.variant.filters.org.opencb.biodata.tools.variant.filters.VariantFilters

org.opencb.biodata.tools.variant.filters.org.opencb.biodata.tools.variant.filters.VariantProtoFilters

org.opencb.biodata.tools.variant.iterators

org.opencb.biodata.tools.variant.iterators.org.opencb.biodata.tools.variant.iterators.VariantContextToAvroVariantVcfIterator

org.opencb.biodata.tools.variant.iterators.org.opencb.biodata.tools.variant.iterators.VariantContextToProtoVariantVcfIterator

org.opencb.biodata.tools.variant.iterators.org.opencb.biodata.tools.variant.iterators.VariantContextVcfIterator

org.opencb.biodata.tools.variant.iterators.org.opencb.biodata.tools.variant.iterators.VcfIterator

org.opencb.biodata.tools.variant.merge

org.opencb.biodata.tools.variant.merge.org.opencb.biodata.tools.variant.merge.VariantMerger

org.opencb.biodata.tools.variant.simulator

org.opencb.biodata.tools.variant.simulator.org.opencb.biodata.tools.variant.simulator.VariantSimulator

org.opencb.biodata.tools.variant.simulator.org.opencb.biodata.tools.variant.simulator.VariantSimulatorConfiguration

org.opencb.biodata.tools.variant.stats

org.opencb.biodata.tools.variant.stats.org.opencb.biodata.tools.variant.stats.VariantAggregatedEVSStatsCalculator

org.opencb.biodata.tools.variant.stats.org.opencb.biodata.tools.variant.stats.VariantAggregatedExacStatsCalculator

org.opencb.biodata.tools.variant.stats.org.opencb.biodata.tools.variant.stats.VariantAggregatedStatsCalculator

org.opencb.biodata.tools.variant.stats.org.opencb.biodata.tools.variant.stats.VariantGlobalStatsCalculator

org.opencb.biodata.tools.variant.stats.org.opencb.biodata.tools.variant.stats.VariantStatsCalculator

org.opencb.biodata.tools.variant.stats.writer

org.opencb.biodata.tools.variant.stats.writer.org.opencb.biodata.tools.variant.stats.writer.VariantStatsPopulationFrequencyExporter

org.opencb.biodata.tools.variant.stats.writer.org.opencb.biodata.tools.variant.stats.writer.VariantStatsTsvExporter

org.opencb.biodata.tools.variant.tasks

org.opencb.biodata.tools.variant.tasks.org.opencb.biodata.tools.variant.tasks.VariantRunner

org.opencb.biodata.tools.variant.tasks.org.opencb.biodata.tools.variant.tasks.VariantStatsTask