org.opencb.cellbase.lib.managers.MetaManager Maven / Gradle / Ivy
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/*
* Copyright 2015-2020 OpenCB
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.opencb.cellbase.lib.managers;
import org.opencb.cellbase.core.api.key.ApiKeyJwtPayload;
import org.opencb.cellbase.core.api.key.ApiKeyStats;
import org.opencb.cellbase.core.config.CellBaseConfiguration;
import org.opencb.cellbase.core.exception.CellBaseException;
import org.opencb.cellbase.core.result.CellBaseDataResult;
import org.opencb.cellbase.lib.impl.core.MetaMongoDBAdaptor;
import org.opencb.commons.monitor.DatastoreStatus;
import java.time.LocalDate;
import java.util.Map;
public class MetaManager extends AbstractManager {
public MetaManager(CellBaseConfiguration configuration) throws CellBaseException {
super("Homo sapiens", null, configuration);
}
@Deprecated
public CellBaseDataResult getVersions(String species, String assembly) {
MetaMongoDBAdaptor metaDBAdaptor = dbAdaptorFactory.getMetaDBAdaptor();
return metaDBAdaptor.getAll();
}
public CellBaseDataResult getVersions() {
MetaMongoDBAdaptor metaDBAdaptor = dbAdaptorFactory.getMetaDBAdaptor();
return metaDBAdaptor.getAll();
}
public String getMaintenanceFlagFile() {
return configuration.getMaintenanceFlagFile();
}
public String getMaintainerContact() {
return configuration.getMaintainerContact();
}
public Map getDatabaseStatus(String species, String assembly) {
return this.mongoDBManager.getDatabaseStatus(species, assembly);
}
public void checkQuota(String apiKey, ApiKeyJwtPayload payload) throws CellBaseException {
String date = getApiKeyStatsDate();
MetaMongoDBAdaptor metaDBAdaptor = dbAdaptorFactory.getMetaDBAdaptor();
CellBaseDataResult quotaResult = metaDBAdaptor.getQuota(apiKey, date);
long numQueries = 0;
if (quotaResult.getNumResults() == 0) {
metaDBAdaptor.initApiKeyStats(apiKey, date);
} else {
numQueries = quotaResult.first().getNumQueries();
}
if (numQueries >= payload.getQuota().getMaxNumQueries()) {
throw new CellBaseException("Maximum query limit reached: Your current API key has a quota of "
+ payload.getQuota().getMaxNumQueries() + " queries");
}
}
public CellBaseDataResult incApiKeyStats(String apiKey, long incNumQueries, long incDuration, long incBytes) {
String date = getApiKeyStatsDate();
MetaMongoDBAdaptor metaDBAdaptor = dbAdaptorFactory.getMetaDBAdaptor();
return metaDBAdaptor.incApiKeyStats(apiKey, date, incNumQueries, incDuration, incBytes);
}
private String getApiKeyStatsDate() {
// Get the current year and month as yyyymm, e.g.:202309
LocalDate currentDate = LocalDate.now();
return currentDate.getYear() + String.format("%02d", currentDate.getMonthValue());
}
}
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