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encga.opencga-catalog.3.3.0.source-code.catalog-indexes.txt Maven / Gradle / Ivy

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{"collections": ["note", "note_archive"], "fields": {"id": 1, "studyUid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["note", "note_archive"], "fields": {"uid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["note", "note_archive"], "fields": {"uuid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["note", "note_archive"], "fields": {"scope": 1, "studyUid": 1}, "options": {}}
{"collections": ["note", "note_archive"], "fields": {"studyUid": 1}, "options": {}}
{"collections": ["note", "note_archive"], "fields": {"visibility": 1, "studyUid": 1}, "options": {}}
{"collections": ["note", "note_archive"], "fields": {"userId": 1, "studyUid": 1}, "options": {}}
{"collections": ["note", "note_archive"], "fields": {"tags": 1, "studyUid": 1}, "options": {}}
{"collections": ["note", "note_archive"], "fields": {"_creationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["note", "note_archive"], "fields": {"_modificationDate": 1, "studyUid": 1}, "options": {}}

{"collections": ["project"], "fields": {"id": 1}, "options": {"unique": true}}
{"collections": ["project"], "fields": {"uid": 1}, "options": {"unique": true}}
{"collections": ["project"], "fields": {"uuid": 1}, "options": {"unique": true}}
{"collections": ["project"], "fields": {"fqn": 1}, "options": {"unique": true}}

{"collections": ["user"], "fields": {"id": 1}, "options": {"unique": true}}

{"collections": ["study"], "fields": {"uid": 1}, "options": {"unique": true}}
{"collections": ["study"], "fields": {"uuid": 1}, "options": {"unique": true}}
{"collections": ["study"], "fields": {"fqn": 1}, "options": {"unique": true}}
{"collections": ["study"], "fields": {"id": 1, "_project.uid": 1}, "options": {"unique": true}}
{"collections": ["study"], "fields": {"groups.id": 1, "uid": 1}, "options": {"unique": true}}
{"collections": ["study"], "fields": {"groups.userIds": 1, "uid": 1}, "options": {"unique": true}}
{"collections": ["study"], "fields": {"_acl": 1}, "options": {}}
{"collections": ["study"], "fields": {"_project.uid": 1}, "options": {}}
{"collections": ["study"], "fields": {"variableSets.id": 1, "uid": 1}, "options": {"unique": true}}

{"collections": ["job"], "fields": {"uuid": 1}, "options": {"unique": true}}
{"collections": ["job"], "fields": {"uid": 1}, "options": {"unique": true}}
{"collections": ["job"], "fields": {"id": 1, "studyUid": 1}, "options": {"unique": true}}
{"collections": ["job"], "fields": {"tool.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"tool.type": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"userId": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"input.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"output.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"outDir.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"tags": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"visited": 1, "studyUid": 1}, "options": {}}
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{"collections": ["job"], "fields": {"_modificationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["job"], "fields": {"studyUid": 1, "_acl": 1}, "options": {}}
{"collections": ["job"], "fields": {"studyUid": 1, "release": 1, "_acl": 1}, "options": {}}

{"collections": ["file"], "fields": {"uuid": 1}, "options": {"unique": true}}
{"collections": ["file"], "fields": {"uid": 1}, "options": {"unique": true}}
{"collections": ["file"], "fields": {"id": 1, "studyUid": 1}, "options": {"unique": true}}
{"collections": ["file"], "fields": {"path": 1, "studyUid": 1}, "options": {"unique": true}}
{"collections": ["file"], "fields": {"name": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"uri": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_reverse": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"type": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"format": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"bioformat": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"tags": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"size": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"software.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"external": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_samples.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_samples.uuid": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_creationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_modificationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"jobId": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"status.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"internal.status.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"internal.variant.index.status.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"studyUid": 1, "_acl": 1}, "options": {}}
{"collections": ["file"], "fields": {"studyUid": 1, "release": 1, "_acl": 1}, "options": {}}
{"collections": ["file"], "fields": {"_as.as": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_as.vs": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_as.id": 1, "_as.value": 1, "studyUid": 1}, "options": {}}
{"collections": ["file"], "fields": {"_ias.as": 1, "studyUid": 1}, "options": {}}
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{"collections": ["file"], "fields": {"_ias.id": 1, "_ias.value": 1, "studyUid": 1}, "options": {}}

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{"collections": ["sample", "sample_archive"], "fields": {"somatic": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"phenotypes.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"phenotypes.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"fileIds": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"cohortIds": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"individualId": 1, "studyUid": 1}, "options": {}}
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{"collections": ["sample", "sample_archive"], "fields": {"_modificationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"processing.product.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"processing.preparationMethod": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"processing.extractionMethod": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"processing.labSampleId": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"collection.from.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"collection.method": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"collection.type": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"studyUid": 1, "_lastOfVersion": 1, "_acl": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"studyUid": 1, "_releaseFromVersion": 1, "_lastOfRelease": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"studyUid": 1, "release": 1, "_acl": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"_as.as": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"_as.vs": 1, "studyUid": 1}, "options": {}}
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{"collections": ["sample", "sample_archive"], "fields": {"_ias.as": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"_ias.vs": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"_ias.id": 1, "_ias.value": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"internal.status.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"status.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["sample", "sample_archive"], "fields": {"internal.rga.status": 1, "studyUid": 1}, "options": {}}

{"collections": ["individual", "individual_archive"], "fields": {"uuid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["individual", "individual_archive"], "fields": {"uid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["individual", "individual_archive"], "fields": {"id": 1, "studyUid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["individual", "individual_archive"], "fields": {"name": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"father.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"mother.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"familyIds": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"sex.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"karyotypicSex": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"ethnicity.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"dateOfBirth": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"lifeStatus": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"samples.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"phenotypes.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"phenotypes.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"disorders.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"disorders.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"population.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"population.subpopulation": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"_creationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"_modificationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"studyUid": 1, "_lastOfVersion": 1, "_acl": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"studyUid": 1, "_releaseFromVersion": 1, "_lastOfRelease": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"studyUid": 1, "release": 1, "_acl": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"_as.as": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"_as.vs": 1, "studyUid": 1}, "options": {}}
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{"collections": ["individual", "individual_archive"], "fields": {"_ias.as": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"_ias.vs": 1, "studyUid": 1}, "options": {}}
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{"collections": ["individual", "individual_archive"], "fields": {"status.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["individual", "individual_archive"], "fields": {"internal.status.id": 1, "studyUid": 1}, "options": {}}

{"collections": ["cohort"], "fields": {"uuid": 1}, "options": {"unique": true}}
{"collections": ["cohort"], "fields": {"uid": 1}, "options": {"unique": true}}
{"collections": ["cohort"], "fields": {"id": 1, "studyUid": 1}, "options": {"unique": true}}
{"collections": ["cohort"], "fields": {"name": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"type": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"samples.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"numSamples": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"_creationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"_modificationDate": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"studyUid": 1, "_acl": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"studyUid": 1, "release": 1, "_acl": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"_as.as": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"_as.vs": 1, "studyUid": 1}, "options": {}}
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{"collections": ["cohort"], "fields": {"status.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["cohort"], "fields": {"internal.status.id": 1, "studyUid": 1}, "options": {}}

{"collections": ["family", "family_archive"], "fields": {"uuid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["family", "family_archive"], "fields": {"uid": 1, "version": 1}, "options": {"unique": true}}
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{"collections": ["family", "family_archive"], "fields": {"name": 1, "studyUid": 1}, "options": {}}
{"collections": ["family", "family_archive"], "fields": {"members.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["family", "family_archive"], "fields": {"phenotypes.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["family", "family_archive"], "fields": {"phenotypes.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["family", "family_archive"], "fields": {"disorders.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["family", "family_archive"], "fields": {"disorders.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["family", "family_archive"], "fields": {"expectedSize": 1, "studyUid": 1}, "options": {}}
{"collections": ["family", "family_archive"], "fields": {"_creationDate": 1, "studyUid": 1}, "options": {}}
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{"collections": ["family", "family_archive"], "fields": {"_as.as": 1, "studyUid": 1}, "options": {}}
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{"collections": ["family", "family_archive"], "fields": {"internal.status.id": 1, "studyUid": 1}, "options": {}}

{"collections": ["panel", "panel_archive"], "fields": {"uuid": 1, "version": 1}, "options": {"unique": true}}
{"collections": ["panel", "panel_archive"], "fields": {"uid": 1, "version": 1}, "options": {"unique": true}}
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{"collections": ["panel", "panel_archive"], "fields": {"name": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"tags": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"disorders.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"disorders.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"variants.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"genes.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"genes.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"source.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"source.name": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"regions.id": 1, "studyUid": 1}, "options": {}}
{"collections": ["panel", "panel_archive"], "fields": {"categories.name": 1, "studyUid": 1}, "options": {}}
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{"collections": ["panel", "panel_archive"], "fields": {"internal.status.id": 1, "studyUid": 1}, "options": {}}

{"collections": ["clinical", "clinical_archive"], "fields": {"id": 1, "studyUid": 1}, "options": {"unique": true}}
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{"collections": ["clinical", "clinical_archive"], "fields": {"files.uid": 1, "studyUid": 1}, "options": {}}
{"collections": ["clinical", "clinical_archive"], "fields": {"proband.uid": 1, "studyUid": 1}, "options": {}}
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{"collections": ["clinical", "clinical_archive"], "fields": {"qualityControl.summary": 1, "studyUid": 1}, "options": {}}
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{"collections": ["interpretation", "interpretation_archive"], "fields": {"uuid": 1, "version": 1}, "options": {"unique": true}}
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