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Artifact opencga-storage-hadoop-core
Group org.opencb.opencga
Version 2.12.7
Last update 02. September 2024
Tags: implements projects data genomic opencga analysis platform
Organization not specified
URL Not specified
License not specified
Dependencies amount 35
Dependencies opencga-core, opencga-storage-core, opencga-storage-hadoop-compat-api, commons-lib, commons-datastore-core, commons-datastore-solr, biodata-tools, biodata-formats, biodata-models, oskar-analysis, ga4gh, cellbase-client, guava, parquet-avro, annotations, jersey-hk2, jersey-container-servlet, solr-solrj, htsjdk, slf4j-api, commons-io, jcl-over-slf4j, protobuf-java, parquet-hadoop, ant, commons-lang3, commons-collections4, avro, avro-mapred, commons-logging, parquet-common, log4j-api, jackson-core, jackson-databind, jackson-annotations,
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Source code of opencga-storage-hadoop-core version 2.12.7

META-INF

META-INF.META-INF.MANIFEST.MF

META-INF.maven.org.opencb.opencga.opencga-storage-hadoop-core

META-INF.maven.org.opencb.opencga.opencga-storage-hadoop-core.META-INF.maven.org.opencb.opencga.opencga-storage-hadoop-core.pom.properties

META-INF.maven.org.opencb.opencga.opencga-storage-hadoop-core.META-INF.maven.org.opencb.opencga.opencga-storage-hadoop-core.pom.xml

org.opencb.opencga.storage.hadoop.app

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.AbstractMain

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.HBaseMain

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.Main

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.PendingVariantsMain

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.PhoenixMain

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.SampleIndexMain

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.VariantEngineUtilsMain

org.opencb.opencga.storage.hadoop.app.org.opencb.opencga.storage.hadoop.app.VariantMetadataMain

org.opencb.opencga.storage.hadoop.auth

org.opencb.opencga.storage.hadoop.auth.org.opencb.opencga.storage.hadoop.auth.HBaseCredentials

org.opencb.opencga.storage.hadoop.exceptions

org.opencb.opencga.storage.hadoop.exceptions.org.opencb.opencga.storage.hadoop.exceptions.StorageHadoopException

org.opencb.opencga.storage.hadoop.io

org.opencb.opencga.storage.hadoop.io.org.opencb.opencga.storage.hadoop.io.HDFSIOConnector

org.opencb.opencga.storage.hadoop.utils

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.AbstractHBaseDataReader

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.AbstractHBaseDataWriter

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.AbstractHBaseDriver

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.AvroWritable

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.CopyHBaseColumnDriver

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.DeleteHBaseColumnDriver

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.HBaseDataReader

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.HBaseDataWriter

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.HBaseLockManager

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.HBaseManager

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.HBaseWriterDriver

org.opencb.opencga.storage.hadoop.utils.org.opencb.opencga.storage.hadoop.utils.PersistentResultScanner

org.opencb.opencga.storage.hadoop.variant

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.AbstractVariantsTableDriver

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.GenomeHelper

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.HadoopLocalLoadVariantStoragePipeline

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.HadoopMRLoadVariantStoragePipeline

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.HadoopVariantQueryParser

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.HadoopVariantStorageEngine

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.HadoopVariantStorageOptions

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.HadoopVariantStoragePipeline

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.VariantTableAggregationDriver

org.opencb.opencga.storage.hadoop.variant.org.opencb.opencga.storage.hadoop.variant.VariantsTableDeleteColumnTask

org.opencb.opencga.storage.hadoop.variant.adaptors

org.opencb.opencga.storage.hadoop.variant.adaptors.org.opencb.opencga.storage.hadoop.variant.adaptors.HBaseColumnIntersectVariantQueryExecutor

org.opencb.opencga.storage.hadoop.variant.adaptors.org.opencb.opencga.storage.hadoop.variant.adaptors.VariantHBaseQueryParser

org.opencb.opencga.storage.hadoop.variant.adaptors.org.opencb.opencga.storage.hadoop.variant.adaptors.VariantHadoopDBAdaptor

org.opencb.opencga.storage.hadoop.variant.adaptors.iterators

org.opencb.opencga.storage.hadoop.variant.adaptors.iterators.org.opencb.opencga.storage.hadoop.variant.adaptors.iterators.VariantHBaseResultSetIterator

org.opencb.opencga.storage.hadoop.variant.adaptors.iterators.org.opencb.opencga.storage.hadoop.variant.adaptors.iterators.VariantHBaseScanIterator

org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix

org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.PhoenixHelper

org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.VariantPhoenixKeyFactory

org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.VariantPhoenixSchema

org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.VariantPhoenixSchemaManager

org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.org.opencb.opencga.storage.hadoop.variant.adaptors.phoenix.VariantSqlQueryParser

org.opencb.opencga.storage.hadoop.variant.adaptors.sample

org.opencb.opencga.storage.hadoop.variant.adaptors.sample.org.opencb.opencga.storage.hadoop.variant.adaptors.sample.HBaseVariantSampleDataManager

org.opencb.opencga.storage.hadoop.variant.analysis

org.opencb.opencga.storage.hadoop.variant.analysis.org.opencb.opencga.storage.hadoop.variant.analysis.HadoopVariantStorageToolExecutor

org.opencb.opencga.storage.hadoop.variant.analysis.gwas

org.opencb.opencga.storage.hadoop.variant.analysis.gwas.org.opencb.opencga.storage.hadoop.variant.analysis.gwas.FisherTestDriver

org.opencb.opencga.storage.hadoop.variant.analysis.gwas.org.opencb.opencga.storage.hadoop.variant.analysis.gwas.GwasHBaseMapReduceAnalysisExecutor

org.opencb.opencga.storage.hadoop.variant.analysis.julie

org.opencb.opencga.storage.hadoop.variant.analysis.julie.org.opencb.opencga.storage.hadoop.variant.analysis.julie.JulieHBaseMapReduceToolExecutor

org.opencb.opencga.storage.hadoop.variant.analysis.julie.org.opencb.opencga.storage.hadoop.variant.analysis.julie.JulieToolDriver

org.opencb.opencga.storage.hadoop.variant.analysis.julie.org.opencb.opencga.storage.hadoop.variant.analysis.julie.JulieToolMapper

org.opencb.opencga.storage.hadoop.variant.analysis.stats

org.opencb.opencga.storage.hadoop.variant.analysis.stats.org.opencb.opencga.storage.hadoop.variant.analysis.stats.CohortVariantStatsHBaseMapReduceAnalysisExecutor

org.opencb.opencga.storage.hadoop.variant.analysis.stats.org.opencb.opencga.storage.hadoop.variant.analysis.stats.SampleVariantStatsHBaseMapReduceAnalysisExecutor

org.opencb.opencga.storage.hadoop.variant.analysis.stats.org.opencb.opencga.storage.hadoop.variant.analysis.stats.VariantStatsHBaseMapReduceAnalysisExecutor

org.opencb.opencga.storage.hadoop.variant.annotation

org.opencb.opencga.storage.hadoop.variant.annotation.org.opencb.opencga.storage.hadoop.variant.annotation.HadoopDefaultVariantAnnotationManager

org.opencb.opencga.storage.hadoop.variant.annotation.org.opencb.opencga.storage.hadoop.variant.annotation.VariantAnnotationHadoopDBWriter

org.opencb.opencga.storage.hadoop.variant.annotation.mr

org.opencb.opencga.storage.hadoop.variant.annotation.mr.org.opencb.opencga.storage.hadoop.variant.annotation.mr.AnalysisAnnotateMapper

org.opencb.opencga.storage.hadoop.variant.annotation.mr.org.opencb.opencga.storage.hadoop.variant.annotation.mr.PhoenixVariantAnnotationWritable

org.opencb.opencga.storage.hadoop.variant.annotation.mr.org.opencb.opencga.storage.hadoop.variant.annotation.mr.VariantAnnotationRebuilderDriver

org.opencb.opencga.storage.hadoop.variant.annotation.mr.org.opencb.opencga.storage.hadoop.variant.annotation.mr.VariantAnnotationRebuilderToolExecutor

org.opencb.opencga.storage.hadoop.variant.annotation.mr.org.opencb.opencga.storage.hadoop.variant.annotation.mr.VariantsTableAnnotateDriver

org.opencb.opencga.storage.hadoop.variant.annotation.pending

org.opencb.opencga.storage.hadoop.variant.annotation.pending.org.opencb.opencga.storage.hadoop.variant.annotation.pending.AnnotationPendingVariantsDescriptor

org.opencb.opencga.storage.hadoop.variant.annotation.pending.org.opencb.opencga.storage.hadoop.variant.annotation.pending.AnnotationPendingVariantsManager

org.opencb.opencga.storage.hadoop.variant.annotation.phoenix

org.opencb.opencga.storage.hadoop.variant.annotation.phoenix.org.opencb.opencga.storage.hadoop.variant.annotation.phoenix.VariantAnnotationPhoenixDBWriter

org.opencb.opencga.storage.hadoop.variant.annotation.phoenix.org.opencb.opencga.storage.hadoop.variant.annotation.phoenix.VariantAnnotationUpsertExecutor

org.opencb.opencga.storage.hadoop.variant.archive

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.ArchiveDriver

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.ArchiveResultToVariantConverter

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.ArchiveRowKeyFactory

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.ArchiveTableHelper

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.VariantHBaseArchiveDataWriter

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.VariantHadoopArchiveDBIterator

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.VariantHbaseTransformTask

org.opencb.opencga.storage.hadoop.variant.archive.org.opencb.opencga.storage.hadoop.variant.archive.VcfRecordComparator

org.opencb.opencga.storage.hadoop.variant.archive.mr

org.opencb.opencga.storage.hadoop.variant.archive.mr.org.opencb.opencga.storage.hadoop.variant.archive.mr.VariantLocalConflictResolver

org.opencb.opencga.storage.hadoop.variant.archive.mr.org.opencb.opencga.storage.hadoop.variant.archive.mr.VariantToVcfSliceMapper

org.opencb.opencga.storage.hadoop.variant.archive.mr.org.opencb.opencga.storage.hadoop.variant.archive.mr.VcfSliceCombiner

org.opencb.opencga.storage.hadoop.variant.archive.mr.org.opencb.opencga.storage.hadoop.variant.archive.mr.VcfSliceReducer

org.opencb.opencga.storage.hadoop.variant.archive.mr.org.opencb.opencga.storage.hadoop.variant.archive.mr.VcfSliceWritable

org.opencb.opencga.storage.hadoop.variant.converters

org.opencb.opencga.storage.hadoop.variant.converters.org.opencb.opencga.storage.hadoop.variant.converters.AbstractPhoenixConverter

org.opencb.opencga.storage.hadoop.variant.converters.org.opencb.opencga.storage.hadoop.variant.converters.HBaseToVariantConverter

org.opencb.opencga.storage.hadoop.variant.converters.org.opencb.opencga.storage.hadoop.variant.converters.HBaseVariantConverterConfiguration

org.opencb.opencga.storage.hadoop.variant.converters.org.opencb.opencga.storage.hadoop.variant.converters.VariantRow

org.opencb.opencga.storage.hadoop.variant.converters.annotation

org.opencb.opencga.storage.hadoop.variant.converters.annotation.org.opencb.opencga.storage.hadoop.variant.converters.annotation.HBaseToVariantAnnotationConverter

org.opencb.opencga.storage.hadoop.variant.converters.annotation.org.opencb.opencga.storage.hadoop.variant.converters.annotation.VariantAnnotationToHBaseConverter

org.opencb.opencga.storage.hadoop.variant.converters.annotation.org.opencb.opencga.storage.hadoop.variant.converters.annotation.VariantAnnotationToPhoenixConverter

org.opencb.opencga.storage.hadoop.variant.converters.stats

org.opencb.opencga.storage.hadoop.variant.converters.stats.org.opencb.opencga.storage.hadoop.variant.converters.stats.HBaseToVariantStatsConverter

org.opencb.opencga.storage.hadoop.variant.converters.stats.org.opencb.opencga.storage.hadoop.variant.converters.stats.VariantStatsToHBaseConverter

org.opencb.opencga.storage.hadoop.variant.converters.study

org.opencb.opencga.storage.hadoop.variant.converters.study.org.opencb.opencga.storage.hadoop.variant.converters.study.HBaseToStudyEntryConverter

org.opencb.opencga.storage.hadoop.variant.converters.study.org.opencb.opencga.storage.hadoop.variant.converters.study.StudyEntryMultiFileToHBaseConverter

org.opencb.opencga.storage.hadoop.variant.converters.study.org.opencb.opencga.storage.hadoop.variant.converters.study.StudyEntrySingleFileToHBaseConverter

org.opencb.opencga.storage.hadoop.variant.converters.study.org.opencb.opencga.storage.hadoop.variant.converters.study.StudyEntryToHBaseConverter

org.opencb.opencga.storage.hadoop.variant.executors

org.opencb.opencga.storage.hadoop.variant.executors.org.opencb.opencga.storage.hadoop.variant.executors.MRExecutor

org.opencb.opencga.storage.hadoop.variant.executors.org.opencb.opencga.storage.hadoop.variant.executors.MRExecutorFactory

org.opencb.opencga.storage.hadoop.variant.executors.org.opencb.opencga.storage.hadoop.variant.executors.SshMRExecutor

org.opencb.opencga.storage.hadoop.variant.executors.org.opencb.opencga.storage.hadoop.variant.executors.SystemMRExecutor

org.opencb.opencga.storage.hadoop.variant.filters

org.opencb.opencga.storage.hadoop.variant.filters.org.opencb.opencga.storage.hadoop.variant.filters.VariantRowFilterFactory

org.opencb.opencga.storage.hadoop.variant.gaps

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.AbstractFillFromArchiveTask

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillGapsDriver

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillGapsFromArchiveMapper

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillGapsFromArchiveTask

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillGapsFromVariantTask

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillGapsMapper

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillGapsTask

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillMissingFromArchiveMapper

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.FillMissingFromArchiveTask

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.PrepareFillMissingDriver

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.PrepareFillMissingMapper

org.opencb.opencga.storage.hadoop.variant.gaps.org.opencb.opencga.storage.hadoop.variant.gaps.VariantOverlappingStatus

org.opencb.opencga.storage.hadoop.variant.gaps.write

org.opencb.opencga.storage.hadoop.variant.gaps.write.org.opencb.opencga.storage.hadoop.variant.gaps.write.FillMissingHBaseWriterDriver

org.opencb.opencga.storage.hadoop.variant.gaps.write.org.opencb.opencga.storage.hadoop.variant.gaps.write.FillMissingHBaseWriterMapper

org.opencb.opencga.storage.hadoop.variant.index

org.opencb.opencga.storage.hadoop.variant.index.org.opencb.opencga.storage.hadoop.variant.index.IndexUtils

org.opencb.opencga.storage.hadoop.variant.index.org.opencb.opencga.storage.hadoop.variant.index.SampleIndexCompoundHeterozygousQueryExecutor

org.opencb.opencga.storage.hadoop.variant.index.org.opencb.opencga.storage.hadoop.variant.index.SampleIndexMendelianErrorQueryExecutor

org.opencb.opencga.storage.hadoop.variant.index.org.opencb.opencga.storage.hadoop.variant.index.SampleIndexOnlyVariantQueryExecutor

org.opencb.opencga.storage.hadoop.variant.index.org.opencb.opencga.storage.hadoop.variant.index.SampleIndexVariantAggregationExecutor

org.opencb.opencga.storage.hadoop.variant.index.org.opencb.opencga.storage.hadoop.variant.index.SampleIndexVariantQueryExecutor

org.opencb.opencga.storage.hadoop.variant.index.annotation

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.AnnotationIndexConverter

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.AnnotationIndexEntry

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.AnnotationIndexPutBuilder

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.AnnotationSummaryIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.BiotypeIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.ClinicalIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.ConsequenceTypeIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.CtBtFtCombinationIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.PopulationFrequencyIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.annotation.org.opencb.opencga.storage.hadoop.variant.index.annotation.TranscriptFlagIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.annotation.mr

org.opencb.opencga.storage.hadoop.variant.index.annotation.mr.org.opencb.opencga.storage.hadoop.variant.index.annotation.mr.SampleIndexAnnotationLoaderDriver

org.opencb.opencga.storage.hadoop.variant.index.annotation.mr.org.opencb.opencga.storage.hadoop.variant.index.annotation.mr.SampleIndexAnnotationLoaderMapper

org.opencb.opencga.storage.hadoop.variant.index.annotation.mr.org.opencb.opencga.storage.hadoop.variant.index.annotation.mr.VariantTableSampleIndexOrderMapper

org.opencb.opencga.storage.hadoop.variant.index.core

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.CategoricalIndexField

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.CategoricalMultiValuedIndexField

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.CombinationIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.CombinationTripleIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.DynamicIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.FixedSizeIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.IndexCodec

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.IndexField

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.IndexSchema

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.RangeIndexField

org.opencb.opencga.storage.hadoop.variant.index.core.org.opencb.opencga.storage.hadoop.variant.index.core.SingleFieldIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.core.filters

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.AndIndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.IndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.IndexFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.MaskIndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.MultiValueIndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.NoOpIndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.OrIndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.RangeIndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.core.filters.org.opencb.opencga.storage.hadoop.variant.index.core.filters.SingleValueIndexFieldFilter

org.opencb.opencga.storage.hadoop.variant.index.family

org.opencb.opencga.storage.hadoop.variant.index.family.org.opencb.opencga.storage.hadoop.variant.index.family.FamilyIndexDriver

org.opencb.opencga.storage.hadoop.variant.index.family.org.opencb.opencga.storage.hadoop.variant.index.family.FamilyIndexLoader

org.opencb.opencga.storage.hadoop.variant.index.family.org.opencb.opencga.storage.hadoop.variant.index.family.FamilyIndexPutBuilder

org.opencb.opencga.storage.hadoop.variant.index.family.org.opencb.opencga.storage.hadoop.variant.index.family.GenotypeCodec

org.opencb.opencga.storage.hadoop.variant.index.family.org.opencb.opencga.storage.hadoop.variant.index.family.MendelianErrorSampleIndexConverter

org.opencb.opencga.storage.hadoop.variant.index.family.org.opencb.opencga.storage.hadoop.variant.index.family.MendelianErrorSampleIndexEntryIterator

org.opencb.opencga.storage.hadoop.variant.index.query

org.opencb.opencga.storage.hadoop.variant.index.query.org.opencb.opencga.storage.hadoop.variant.index.query.LocusQuery

org.opencb.opencga.storage.hadoop.variant.index.query.org.opencb.opencga.storage.hadoop.variant.index.query.RangeQuery

org.opencb.opencga.storage.hadoop.variant.index.query.org.opencb.opencga.storage.hadoop.variant.index.query.SampleAnnotationIndexQuery

org.opencb.opencga.storage.hadoop.variant.index.query.org.opencb.opencga.storage.hadoop.variant.index.query.SampleFileIndexQuery

org.opencb.opencga.storage.hadoop.variant.index.query.org.opencb.opencga.storage.hadoop.variant.index.query.SampleIndexQuery

org.opencb.opencga.storage.hadoop.variant.index.query.org.opencb.opencga.storage.hadoop.variant.index.query.SingleSampleIndexQuery

org.opencb.opencga.storage.hadoop.variant.index.sample

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.AbstractSampleIndexEntryFilter

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.AlleleCodec

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.FileIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.HBaseToSampleIndexConverter

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.RawSampleIndexEntryFilter

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.RawSingleSampleIndexVariantDBIterator

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexAnnotationLoader

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexBuilder

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexDBAdaptor

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexDBLoader

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexDeleteHBaseColumnTask

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexDriver

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexEntry

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexEntryFilter

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexEntryIterator

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexEntryPutBuilder

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexQueryParser

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexSchema

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexSchemaFactory

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleIndexVariantBiConverter

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SampleVariantIndexEntry

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.SingleSampleIndexVariantDBIterator

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.VariantFileIndexConverter

org.opencb.opencga.storage.hadoop.variant.index.sample.org.opencb.opencga.storage.hadoop.variant.index.sample.VariantTypeIndexCodec

org.opencb.opencga.storage.hadoop.variant.io

org.opencb.opencga.storage.hadoop.variant.io.org.opencb.opencga.storage.hadoop.variant.io.HadoopVariantExporter

org.opencb.opencga.storage.hadoop.variant.io.org.opencb.opencga.storage.hadoop.variant.io.VariantExporterDriver

org.opencb.opencga.storage.hadoop.variant.io.org.opencb.opencga.storage.hadoop.variant.io.VariantParquetWriter

org.opencb.opencga.storage.hadoop.variant.load

org.opencb.opencga.storage.hadoop.variant.load.org.opencb.opencga.storage.hadoop.variant.load.VariantHadoopDBWriter

org.opencb.opencga.storage.hadoop.variant.metadata

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.AbstractHBaseDBAdaptor

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseCohortMetadataDBAdaptor

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseFileMetadataDBAdaptor

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseProjectMetadataDBAdaptor

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseSampleMetadataDBAdaptor

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseStudyMetadataDBAdaptor

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseTaskMetadataDBAdaptor

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseVariantMetadataUtils

org.opencb.opencga.storage.hadoop.variant.metadata.org.opencb.opencga.storage.hadoop.variant.metadata.HBaseVariantStorageMetadataDBAdaptorFactory

org.opencb.opencga.storage.hadoop.variant.migration.v2_0_0

org.opencb.opencga.storage.hadoop.variant.migration.v2_0_0.org.opencb.opencga.storage.hadoop.variant.migration.v2_0_0.HadoopVariantStorage200MigrationToolExecutor

org.opencb.opencga.storage.hadoop.variant.migration.v2_0_0.org.opencb.opencga.storage.hadoop.variant.migration.v2_0_0.VariantMigration200Driver

org.opencb.opencga.storage.hadoop.variant.migration.v2_3_0

org.opencb.opencga.storage.hadoop.variant.migration.v2_3_0.org.opencb.opencga.storage.hadoop.variant.migration.v2_3_0.AddMissingColumns

org.opencb.opencga.storage.hadoop.variant.migration.v2_4_13

org.opencb.opencga.storage.hadoop.variant.migration.v2_4_13.org.opencb.opencga.storage.hadoop.variant.migration.v2_4_13.ConvertIntoVirtual

org.opencb.opencga.storage.hadoop.variant.models.protobuf

org.opencb.opencga.storage.hadoop.variant.models.protobuf.org.opencb.opencga.storage.hadoop.variant.models.protobuf.VariantHBase

org.opencb.opencga.storage.hadoop.variant.mr

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.AbstractArchiveTableMapper

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.AbstractHBaseVariantMapper

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.AbstractHBaseVariantTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.CustomPhoenixInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.ExposedResultSetDBWritable

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.HBaseVariantRowTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.HBaseVariantTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.MultiRegionSampleIndexTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.PartialResultTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.PhoenixVariantRowTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.PhoenixVariantTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.SampleIndexTableInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.SampleIndexTableRecordReader

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.TransformInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantAlignedInputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantFileOutputFormat

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantMapReduceUtil

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantMapper

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantRowMapper

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantTableHelper

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantsTableInputSplitter

org.opencb.opencga.storage.hadoop.variant.mr.org.opencb.opencga.storage.hadoop.variant.mr.VariantsTableMapReduceHelper

org.opencb.opencga.storage.hadoop.variant.pending

org.opencb.opencga.storage.hadoop.variant.pending.org.opencb.opencga.storage.hadoop.variant.pending.DiscoverPendingVariantsDriver

org.opencb.opencga.storage.hadoop.variant.pending.org.opencb.opencga.storage.hadoop.variant.pending.PendingVariantsDBCleaner

org.opencb.opencga.storage.hadoop.variant.pending.org.opencb.opencga.storage.hadoop.variant.pending.PendingVariantsDescriptor

org.opencb.opencga.storage.hadoop.variant.pending.org.opencb.opencga.storage.hadoop.variant.pending.PendingVariantsManager

org.opencb.opencga.storage.hadoop.variant.pending.org.opencb.opencga.storage.hadoop.variant.pending.PendingVariantsReader

org.opencb.opencga.storage.hadoop.variant.prune

org.opencb.opencga.storage.hadoop.variant.prune.org.opencb.opencga.storage.hadoop.variant.prune.SecondaryIndexPrunePendingVariantsDescriptor

org.opencb.opencga.storage.hadoop.variant.prune.org.opencb.opencga.storage.hadoop.variant.prune.SecondaryIndexPrunePendingVariantsManager

org.opencb.opencga.storage.hadoop.variant.prune.org.opencb.opencga.storage.hadoop.variant.prune.VariantPruneDriver

org.opencb.opencga.storage.hadoop.variant.prune.org.opencb.opencga.storage.hadoop.variant.prune.VariantPruneDriverParams

org.opencb.opencga.storage.hadoop.variant.prune.org.opencb.opencga.storage.hadoop.variant.prune.VariantPruneManager

org.opencb.opencga.storage.hadoop.variant.prune.org.opencb.opencga.storage.hadoop.variant.prune.VariantPruneReportRecord

org.opencb.opencga.storage.hadoop.variant.score

org.opencb.opencga.storage.hadoop.variant.score.org.opencb.opencga.storage.hadoop.variant.score.HadoopVariantScoreLoader

org.opencb.opencga.storage.hadoop.variant.score.org.opencb.opencga.storage.hadoop.variant.score.HadoopVariantScoreRemover

org.opencb.opencga.storage.hadoop.variant.score.org.opencb.opencga.storage.hadoop.variant.score.VariantScoreToHBaseConverter

org.opencb.opencga.storage.hadoop.variant.search

org.opencb.opencga.storage.hadoop.variant.search.org.opencb.opencga.storage.hadoop.variant.search.HadoopVariantSearchDataDeleter

org.opencb.opencga.storage.hadoop.variant.search.org.opencb.opencga.storage.hadoop.variant.search.HadoopVariantSearchDataWriter

org.opencb.opencga.storage.hadoop.variant.search.org.opencb.opencga.storage.hadoop.variant.search.HadoopVariantSearchIndexUtils

org.opencb.opencga.storage.hadoop.variant.search.org.opencb.opencga.storage.hadoop.variant.search.SecondaryIndexPendingVariantsDescriptor

org.opencb.opencga.storage.hadoop.variant.search.org.opencb.opencga.storage.hadoop.variant.search.SecondaryIndexPendingVariantsManager

org.opencb.opencga.storage.hadoop.variant.search.org.opencb.opencga.storage.hadoop.variant.search.SecondaryIndexPendingVariantsReader

org.opencb.opencga.storage.hadoop.variant.stats

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.CheckVariantStatsDriver

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.CohortVariantStatsDriver

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.HBaseVariantStatsCalculator

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.HadoopDefaultVariantStatisticsManager

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.HadoopMRVariantStatisticsManager

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.SampleVariantStatsDriver

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.SaturationStatsDriver

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.VariantHistogramDriver

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.VariantStatsDriver

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.VariantStatsFromResultMapper

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.VariantStatsFromVariantRowTsvMapper

org.opencb.opencga.storage.hadoop.variant.stats.org.opencb.opencga.storage.hadoop.variant.stats.VariantStatsMapper

org.opencb.opencga.storage.hadoop.variant.transform

org.opencb.opencga.storage.hadoop.variant.transform.org.opencb.opencga.storage.hadoop.variant.transform.VariantSliceReader

org.opencb.opencga.storage.hadoop.variant.transform.org.opencb.opencga.storage.hadoop.variant.transform.VariantToVcfSliceConverterTask

org.opencb.opencga.storage.hadoop.variant.utils

org.opencb.opencga.storage.hadoop.variant.utils.org.opencb.opencga.storage.hadoop.variant.utils.HBaseVariantTableNameGenerator

protobuf.opencb

protobuf.opencb.protobuf.opencb.variant_hbase.proto

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