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Various clustering algorithm implementations for all primitive types including random, random forest, K-Means (Exact, Hierarchical and Approximate), ...
/*
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/Users/jsh2/Work/openimaj/target/checkout/machine-learning/clustering/src/main/jtemp/org/openimaj/ml/clustering/assignment/hard/KDTree#T#EuclideanAssigner.jtemp
*/
/**
* Copyright (c) 2011, The University of Southampton and the individual contributors.
* All rights reserved.
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* Redistribution and use in source and binary forms, with or without modification,
* are permitted provided that the following conditions are met:
*
* * Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
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* * Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* * Neither the name of the University of Southampton nor the names of its
* contributors may be used to endorse or promote products derived from this
* software without specific prior written permission.
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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package org.openimaj.ml.clustering.assignment.hard;
import org.openimaj.knn.FloatNearestNeighbours;
import org.openimaj.knn.FloatNearestNeighboursProvider;
import org.openimaj.knn.approximate.FloatNearestNeighboursKDTree;
import org.openimaj.ml.clustering.assignment.HardAssigner;
import org.openimaj.ml.clustering.CentroidsProvider;
import org.openimaj.util.pair.IntFloatPair;
/**
* A {@link HardAssigner} that uses a {@link FloatNearestNeighboursKDTree} to
* generate approximately correct cluster assignments.
*
* @author Jonathon Hare ([email protected])
*
*/
public class KDTreeFloatEuclideanAssigner implements HardAssigner {
protected FloatNearestNeighboursKDTree nn;
/**
* Construct the assigner using the given cluster data.
*
* @param provider the cluster data provider
*/
public KDTreeFloatEuclideanAssigner(CentroidsProvider provider) {
if (provider instanceof FloatNearestNeighboursProvider) {
FloatNearestNeighbours internal = ((FloatNearestNeighboursProvider)provider).getNearestNeighbours();
if (internal != null && internal instanceof FloatNearestNeighboursKDTree) {
nn = (FloatNearestNeighboursKDTree) internal;
return;
}
}
nn = new FloatNearestNeighboursKDTree(provider.getCentroids(),
FloatNearestNeighboursKDTree.DEFAULT_NTREES, FloatNearestNeighboursKDTree.DEFAULT_NCHECKS);
}
/**
* Construct the assigner using the given cluster data.
*
* @param data the cluster data
*/
public KDTreeFloatEuclideanAssigner(float[][] data) {
nn = new FloatNearestNeighboursKDTree(data, FloatNearestNeighboursKDTree.DEFAULT_NTREES, FloatNearestNeighboursKDTree.DEFAULT_NCHECKS);
}
@Override
public int[] assign(float[][] data) {
int [] argmins = new int [data.length];
float [] mins = new float [data.length];
nn.searchNN(data, argmins, mins);
return argmins;
}
@Override
public int assign(float[] data) {
return assign(new float[][] { data })[0];
}
@Override
public void assignDistance(float[][] data, int[] indices, float[] distances) {
nn.searchNN(data, indices, distances);
}
@Override
public IntFloatPair assignDistance(float[] data) {
int [] index = new int [1];
float [] distance = new float [1];
nn.searchNN(new float[][] { data }, index, distance);
return new IntFloatPair(index[0], distance[0]);
}
@Override
public int size() {
return nn.size();
}
@Override
public int numDimensions() {
return nn.numDimensions();
}
}