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ome.xml.model.MapAnnotation Maven / Gradle / Ivy
/*
* #%L
* OME-XML Java library for working with OME-XML metadata structures.
* %%
* Copyright (C) 2006 - 2016 Open Microscopy Environment:
* - Massachusetts Institute of Technology
* - National Institutes of Health
* - University of Dundee
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*
* The views and conclusions contained in the software and documentation are
* those of the authors and should not be interpreted as representing official
* policies, either expressed or implied, of any organization.
* #L%
*/
/*-----------------------------------------------------------------------------
*
* THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
*
*-----------------------------------------------------------------------------
*/
package ome.xml.model;
import java.util.ArrayList;
import java.util.List;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import ome.xml.model.enums.*;
import ome.xml.model.enums.handlers.*;
import ome.xml.model.primitives.*;
import ome.units.quantity.*;
import ome.units.unit.Unit;
public class MapAnnotation extends Annotation
{
// Base: Annotation -- Name: MapAnnotation -- Type: MapAnnotation -- modelBaseType: Annotation -- langBaseType: Object
// -- Constants --
public static final String NAMESPACE = "http://www.openmicroscopy.org/Schemas/OME/2016-06";
/** Logger for this class. */
private static final Logger LOGGER =
LoggerFactory.getLogger(MapAnnotation.class);
// -- Instance variables --
// Value property
private List value;
// StructuredAnnotations_BackReference back reference
private StructuredAnnotations structuredAnnotations;
// -- Constructors --
/** Default constructor. */
public MapAnnotation()
{
super();
}
/**
* Constructs MapAnnotation recursively from an XML DOM tree.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public MapAnnotation(Element element, OMEModel model)
throws EnumerationException
{
update(element, model);
}
/** Copy constructor. */
public MapAnnotation(MapAnnotation orig)
{
super(orig);
value = orig.value;
structuredAnnotations = orig.structuredAnnotations;
}
// -- Custom content from MapAnnotation specific template --
// -- OMEModelObject API methods --
/**
* Updates MapAnnotation recursively from an XML DOM tree. NOTE: No
* properties are removed, only added or updated.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public void update(Element element, OMEModel model)
throws EnumerationException
{
super.update(element, model);
List Value_nodeList =
getChildrenByTagName(element, "Value");
if (Value_nodeList.size() > 1)
{
// TODO: Should be its own Exception
throw new RuntimeException(String.format(
"Value node list size %d != 1",
Value_nodeList.size()));
}
else if (Value_nodeList.size() != 0)
{
// Element property Value which is complex (has
// sub-elements)
List p = new java.util.ArrayList<>();
NodeList children = Value_nodeList.get(0).getChildNodes();
for (int i=0; i getValue()
{
return value;
}
public void setValue(List value)
{
this.value = value;
}
// Property StructuredAnnotations_BackReference
public StructuredAnnotations getStructuredAnnotations()
{
return structuredAnnotations;
}
public void setStructuredAnnotations(StructuredAnnotations structuredAnnotations_BackReference)
{
this.structuredAnnotations = structuredAnnotations_BackReference;
}
public Element asXMLElement(Document document)
{
return asXMLElement(document, null);
}
public Element asXMLElement(Document document, Element MapAnnotation_element)
{
// Creating XML block for MapAnnotation
if (MapAnnotation_element == null)
{
MapAnnotation_element =
document.createElementNS(NAMESPACE, "MapAnnotation");
}
// Ensure any base annotations add their Elements first
super.asXMLElement(document, MapAnnotation_element);
if (value != null)
{
// Element property Value which is complex (has
// sub-elements)
Element value_child =
document.createElementNS(NAMESPACE, "Value");
for (MapPair entry: value) {
Element pair = document.createElementNS(NAMESPACE, "M");
pair.setAttribute("K", entry.getName());
pair.setTextContent(entry.getValue());
value_child.appendChild(pair);
}
MapAnnotation_element.appendChild(value_child);
}
// *** IGNORING *** Skipped back reference StructuredAnnotations_BackReference
return MapAnnotation_element;
}
}
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