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A library for working with OME-XML metadata structures.
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/*
* #%L
* OME-XML Java library for working with OME-XML metadata structures.
* %%
* Copyright (C) 2006 - 2016 Open Microscopy Environment:
* - Massachusetts Institute of Technology
* - National Institutes of Health
* - University of Dundee
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*
* The views and conclusions contained in the software and documentation are
* those of the authors and should not be interpreted as representing official
* policies, either expressed or implied, of any organization.
* #L%
*/
/*-----------------------------------------------------------------------------
*
* THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
*
*-----------------------------------------------------------------------------
*/
package ome.xml.model;
import java.util.ArrayList;
import java.util.List;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import ome.xml.model.enums.*;
import ome.xml.model.enums.handlers.*;
import ome.xml.model.primitives.*;
import ome.units.quantity.*;
import ome.units.unit.Unit;
public class DetectorSettings extends Settings
{
// Base: Settings -- Name: DetectorSettings -- Type: DetectorSettings -- modelBaseType: Settings -- langBaseType: Object
// -- Constants --
public static final String NAMESPACE = "http://www.openmicroscopy.org/Schemas/OME/2016-06";
/** Logger for this class. */
private static final Logger LOGGER =
LoggerFactory.getLogger(DetectorSettings.class);
// -- Instance variables --
// ID property
private String id;
// Offset property
private Double offset;
// Gain property
private Double gain;
// Voltage property
private ElectricPotential voltage;
// Zoom property
private Double zoom;
// ReadOutRate property
private Frequency readOutRate;
// Binning property
private Binning binning;
// Integration property
private PositiveInteger integration;
// DetectorRef back reference
private Detector detector;
// -- Constructors --
/** Default constructor. */
public DetectorSettings()
{
super();
}
/**
* Constructs DetectorSettings recursively from an XML DOM tree.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public DetectorSettings(Element element, OMEModel model)
throws EnumerationException
{
update(element, model);
}
/** Copy constructor. */
public DetectorSettings(DetectorSettings orig)
{
super(orig);
id = orig.id;
offset = orig.offset;
gain = orig.gain;
voltage = orig.voltage;
zoom = orig.zoom;
readOutRate = orig.readOutRate;
binning = orig.binning;
integration = orig.integration;
detector = orig.detector;
}
// -- Custom content from DetectorSettings specific template --
// -- OMEModelObject API methods --
/**
* Updates DetectorSettings recursively from an XML DOM tree. NOTE: No
* properties are removed, only added or updated.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public void update(Element element, OMEModel model)
throws EnumerationException
{
super.update(element, model);
if (!element.hasAttribute("ID") && getID() == null)
{
// TODO: Should be its own exception
throw new RuntimeException(
"DetectorSettings missing required ID property.");
}
if (element.hasAttribute("ID"))
{
// ID property
setID(String.valueOf(
element.getAttribute("ID")));
// Adding this model object to the model handler
model.addModelObject(getID(), this);
}
if (element.hasAttribute("Offset"))
{
// Attribute property Offset
setOffset(Double.valueOf(
element.getAttribute("Offset")));
}
if (element.hasAttribute("Gain"))
{
// Attribute property Gain
setGain(Double.valueOf(
element.getAttribute("Gain")));
}
if (element.hasAttribute("Voltage"))
{
// Attribute property Voltage with unit companion VoltageUnit
String unitSymbol = element.getAttribute("VoltageUnit");
if ((unitSymbol == null) || (unitSymbol.isEmpty()))
{
// Use default value specified in the xsd model
unitSymbol = getVoltageUnitXsdDefault();
}
UnitsElectricPotential modelUnit =
UnitsElectricPotential.fromString(unitSymbol);
Double baseValue = Double.valueOf(
element.getAttribute("Voltage"));
setVoltage(UnitsElectricPotentialEnumHandler.getQuantity(baseValue, modelUnit));
}
if (element.hasAttribute("Zoom"))
{
// Attribute property Zoom
setZoom(Double.valueOf(
element.getAttribute("Zoom")));
}
if (element.hasAttribute("ReadOutRate"))
{
// Attribute property ReadOutRate with unit companion ReadOutRateUnit
String unitSymbol = element.getAttribute("ReadOutRateUnit");
if ((unitSymbol == null) || (unitSymbol.isEmpty()))
{
// Use default value specified in the xsd model
unitSymbol = getReadOutRateUnitXsdDefault();
}
UnitsFrequency modelUnit =
UnitsFrequency.fromString(unitSymbol);
Double baseValue = Double.valueOf(
element.getAttribute("ReadOutRate"));
setReadOutRate(UnitsFrequencyEnumHandler.getQuantity(baseValue, modelUnit));
}
if (element.hasAttribute("Binning"))
{
// Attribute property which is an enumeration Binning
setBinning(Binning.fromString(
element.getAttribute("Binning")));
}
if (element.hasAttribute("Integration"))
{
// Attribute property Integration
setIntegration(PositiveInteger.valueOf(
element.getAttribute("Integration")));
}
}
// -- DetectorSettings API methods --
public boolean link(Reference reference, OMEModelObject o)
{
return super.link(reference, o);
}
// Property ID
public String getID()
{
return id;
}
public void setID(String id)
{
this.id = id;
}
// Property Offset
public Double getOffset()
{
return offset;
}
public void setOffset(Double offset)
{
this.offset = offset;
}
// Property Gain
public Double getGain()
{
return gain;
}
public void setGain(Double gain)
{
this.gain = gain;
}
// Property Voltage with unit companion VoltageUnit
public ElectricPotential getVoltage()
{
return voltage;
}
public void setVoltage(ElectricPotential voltage)
{
this.voltage = voltage;
}
// Property VoltageUnit is a unit companion
@SuppressWarnings("SameReturnValue")
public static String getVoltageUnitXsdDefault()
{
return "V";
}
// Property Zoom
public Double getZoom()
{
return zoom;
}
public void setZoom(Double zoom)
{
this.zoom = zoom;
}
// Property ReadOutRate with unit companion ReadOutRateUnit
public Frequency getReadOutRate()
{
return readOutRate;
}
public void setReadOutRate(Frequency readOutRate)
{
this.readOutRate = readOutRate;
}
// Property ReadOutRateUnit is a unit companion
@SuppressWarnings("SameReturnValue")
public static String getReadOutRateUnitXsdDefault()
{
return "MHz";
}
// Property Binning
public Binning getBinning()
{
return binning;
}
public void setBinning(Binning binning)
{
this.binning = binning;
}
// Property Integration
public PositiveInteger getIntegration()
{
return integration;
}
public void setIntegration(PositiveInteger integration)
{
this.integration = integration;
}
// Property DetectorRef
public Detector getDetector()
{
return detector;
}
public void setDetector(Detector detector)
{
this.detector = detector;
}
public Element asXMLElement(Document document)
{
return asXMLElement(document, null);
}
public Element asXMLElement(Document document, Element DetectorSettings_element)
{
// Creating XML block for DetectorSettings
if (DetectorSettings_element == null)
{
DetectorSettings_element =
document.createElementNS(NAMESPACE, "DetectorSettings");
}
// Ensure any base annotations add their Elements first
super.asXMLElement(document, DetectorSettings_element);
if (id != null)
{
// Attribute property ID
DetectorSettings_element.setAttribute("ID", id);
}
if (offset != null)
{
// Attribute property Offset
DetectorSettings_element.setAttribute("Offset", offset.toString());
}
if (gain != null)
{
// Attribute property Gain
DetectorSettings_element.setAttribute("Gain", gain.toString());
}
if (voltage != null)
{
// Attribute property Voltage with units companion prop.unitsCompanion.name
if (voltage.value() != null)
{
DetectorSettings_element.setAttribute("Voltage", voltage.value().toString());
}
if (voltage.unit() != null)
{
try
{
UnitsElectricPotential enumUnits = UnitsElectricPotential.fromString(voltage.unit().getSymbol());
DetectorSettings_element.setAttribute("VoltageUnit", enumUnits.toString());
} catch (EnumerationException e)
{
LOGGER.debug("Unable to create xml for DetectorSettings:VoltageUnit: {}", e.toString());
}
}
}
if (zoom != null)
{
// Attribute property Zoom
DetectorSettings_element.setAttribute("Zoom", zoom.toString());
}
if (readOutRate != null)
{
// Attribute property ReadOutRate with units companion prop.unitsCompanion.name
if (readOutRate.value() != null)
{
DetectorSettings_element.setAttribute("ReadOutRate", readOutRate.value().toString());
}
if (readOutRate.unit() != null)
{
try
{
UnitsFrequency enumUnits = UnitsFrequency.fromString(readOutRate.unit().getSymbol());
DetectorSettings_element.setAttribute("ReadOutRateUnit", enumUnits.toString());
} catch (EnumerationException e)
{
LOGGER.debug("Unable to create xml for DetectorSettings:ReadOutRateUnit: {}", e.toString());
}
}
}
if (binning != null)
{
// Attribute property Binning
DetectorSettings_element.setAttribute("Binning", binning.toString());
}
if (integration != null)
{
// Attribute property Integration
DetectorSettings_element.setAttribute("Integration", integration.toString());
}
// *** IGNORING *** Skipped back reference DetectorRef
return DetectorSettings_element;
}
}
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